- This product has not had a release in over 1 year and may no longer be maintained.
Profile the content of a miRNA sequencing run.
Given a set of aligned reads in 1 or more .sam files, produce an annotated version of the .sam where each read is given an annotation based on its coordinate. Additional summary information about the content of each sample is also generated, including miRNA species and other genomic features found.
Based on analysis software used in Morin et al., Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells., Genome Research Apr, 2008.
Documentation on required applications and instructions for running the software is in the README.TXT in the tarball.
Author: Andy Chu
For support and other inquiries, contact Andy Chu.
MiRNA Profiling 0.2.6
Released Jun 22, 2011
This release includes many usability enhancements, refer to CHANGELOG for full set of changes. Note that reporting of crossmapped reads differ between v0.2.6 and v0.2.5. Reports from a set of samples must be generated using the same code version.
More about this release…
- Get MiRNA Profiling for all platforms
- If you are using Plone 3.2 or higher, you probably want to install this product with buildout. See our tutorial on installing add-on products with buildout for more information.
|0.2.6||Jun 22, 2011||This release includes many usability enhancements, refer to CHANGELOG for full set of changes. Note that reporting of crossmapped reads differ between v0.2.6 and v0.2.5. Reports from a set of samples must be generated using the same code version. More about this release…||AFL||final|
|0.2.5||Aug 05, 2010||This releases contains a major bug fix in reporting star strand miRNAs introduced in v0.2.4's new annotations. More about this release…||AFL||final|
|0.2.4||Jul 19, 2010||This release fixes some major bugs in the coordinate based annotation of miRNA arms and the tracking of cross-mapped miRNAs. Annotations are also improved with more detail. More about this release…||AFL||final|
|0.2.2||Jun 01, 2010||First public release. More about this release…||AFL||final|