HLAminer 1.3.1 (Oct 10, 2017)

HLAminer

Streamlined output. Minor bug fixes.

For additional information about this project, please visit the overview page .

Available downloads

HLAminer_v1-3-1.tar.gz

For all platforms (19.7 MB)

Release Notes

State Final release
License BCCA (academic use)
Release Manager Rene Warren

-More concise HLA allele summary in HLAminer_HPTASR.csv and HLAminer_HPRA.csv (associated .log is unchanged and lists all predictions)
-Keeps top two [highest-scoring by HLA group] predictions per gene and only the 'P' designated allele when the summary include HLA Sequences reported to have the same antigen binding domain.
-For the original output, refer to the HLAminer_v1-2.pl included in the ./bin directory
-A prediction example from MCF-7 PacBio RNA-seq reads is also provided

Project Resources

Project owner: Rene Warren