Projects in category Genome Assembly
« Back to project overviewAssembling sequence reads into the genome.
The available projects in this category, alphabetized.
ABySS
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
FASSI - Fingerprint and Assembly Incorporation
A stand-alone Perl application, that calculates BAC end and BAC overlap length constraints from clone fingerprint map contigs created by the FPC package to improve the contiguity of whole-genome shotgun sequence (WGS) assemblies.
GUM: Group, User Manager
Web-based application for managing user accounts and groups stored in LDAP.
SAM - Sequence Assembly Manager
SAM is a Whole Genome Assembly (WGA) Management and Visualization Tool. It provides a generic platform for manipulating, analyzing and viewing WGA data, regardless of input type.
SSAKE
SSAKE is a genomics application for assembling millions of very short DNA sequences.
THOR
THOR, the Targeted High-throughput Ortholog Reconstructor, is a Java application designed to assemble target genomic sequence orthologs in low-coverage genomes.
XMatchView
XMatchView is a python application designed to visualize DNA sequence alignments.