A sequence assembly visualization tool
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
- ABySS-Explorer: Visualizing genome sequence assemblies. Nielsen CB, Jackman SD, Birol I, Jones SJM. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009). 2009. 15(6):881-8. Best Paper Award (PubMed)
- De novo Transcriptome Assembly with ABySS. Birol İ, Jackman SD, Nielsen CB, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA and Jones SJM. Bioinformatics. 2009. 1;25(21):2872-7. (PubMed)
Released Jul 20, 2012
Version 1.3.4 supports assembly files from ABySS 1.3.4.
More about this release…
|1.3.4||Jul 20, 2012||Version 1.3.4 supports assembly files from ABySS 1.3.4. More about this release…||BCCA (academic use)||final|
|1.3.0||Nov 28, 2011||Version 1.3.0 is compatible with assemblies generated from ABySS 1.3.0 or above. In addition to visualizing ABySS assemblies as graphs, it also displays contiguity statistics and plots. More about this release…||BCCA (academic use)||final|
|1.0.1||Jun 01, 2010||Fixed bug causing errors when loading some ABySS graphs. More about this release…||BCCA (academic use)||final|
|1.0||Feb 26, 2010||Initial ABySS-Explorer release. More about this release…||AFL||final|