ABySS-Explorer
A sequence assembly visualization tool
Current release
ABySS-Explorer 1.0.1
Released Jun 01, 2010
Fixed bug causing errors when loading some ABySS graphs.
More about this release…
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Project Description
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
Two test data sets are available: Human BAC clone assembly, E.coli genome assembly
Publications:
- ABySS-Explorer: Visualizing genome sequence assemblies. Nielsen CB, Jackman SD, Birol I, Jones SJM. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009). 2009. 15(6):881-8. Best Paper Award (PubMed)
- De novo Transcriptome Assembly with ABySS. Birol İ, Jackman SD, Nielsen CB, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA and Jones SJM. Bioinformatics. 2009. 1;25(21):2872-7. (PubMed)
