GSC Software Centre
Currently listing 26 projects with 57 releases.
Bioinformatic Software, Scripts and Tools
Lastest GSC Software Releases
MiRNA Profiling 0.2.4
Released on Jul 19, 2010
Profile the content of a miRNA sequencing run.
New in this release: This release fixes some major bugs in the coordinate based annotation of miRNA arms and the tracking of cross-mapped miRNAs. Annotations are also improved with ...
ABySS 1.2.1
Released on Jul 12, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Handle mate pair libraries with reverse-forward orientation as produced by circular, large-fragment libraries. Distance estimates are improved.
MiRNA Profiling 0.2.2
Released on Jun 01, 2010
Profile the content of a miRNA sequencing run.
New in this release: First public release.
ABySS-Explorer 1.0.1
Released on Jun 01, 2010
A sequence assembly visualization tool
New in this release: Fixed bug causing errors when loading some ABySS graphs.
SSAKE 3.5
Released on May 28, 2010
SSAKE is a genomics application for assembling millions of very short DNA sequences.
New in this release: v3.5+ Uses mate pairs to help resolve repeats (preventing contig misassemblies) at run time and attempts to force-fill gaps with redundant sequences (improves ...
ABySS 1.2.0
Released on May 26, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Scaffold over gaps in coverage and unresolved repeats. Read sequence from SAM and BAM files. Set q=3 by default. Set E=0 when coverage is low (<2). Generate a ...
Trans-ABySS 0.2
Released on May 26, 2010
Software package for Trans-ABySS
New in this release: Addition of scripts for novel poly-adenylation site detection and novel anomalous contig detection.
Trans-ABySS 0.1
Released on Apr 14, 2010
Software package for Trans-ABySS
New in this release: Initial Trans-ABySS release
ABySS-Explorer 1.0
Released on Feb 26, 2010
A sequence assembly visualization tool
New in this release: Initial ABySS-Explorer release.
ABySS 1.1.2
Released on Feb 15, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Pop bubbles resulting from indels. Read tar files. Fix performance issues in ParseAligns by syncing KAligner threads periodically.
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