GSC Software Centre
Currently listing 34 projects with 104 releases.
Bioinformatic Software, Scripts and Tools
Lastest GSC Software Releases
ABySS 1.3.5
Released on Mar 05, 2013
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: This release introduces new tools to merge overlapping read pairs, layout and merge contigs with perfect sequence overlap, and calculate contig contiguity and ...
Barnacle 1.0.0
Released on Nov 15, 2012
A pipeline for detecting and characterizing chimeric transcripts from long RNA sequences, such as those generated by de novo transcriptome assembly. It ...
New in this release: Initial Barnacle release
Barnacle 0.1.2 (Alpha release)
Released on Nov 15, 2012
A pipeline for detecting and characterizing chimeric transcripts from long RNA sequences, such as those generated by de novo transcriptome assembly. It ...
New in this release: Alpha release
Trans-ABySS 1.4.4
Released on Oct 09, 2012
Analyze ABySS multi-k-assembled shotgun transcriptome data.
New in this release: Supports both transcriptome and genome assemblies. A more robust pipeline and improvement to the 3 analysis suites (fusions, indels, and splicing).
Trans-ABySS 1.3.5
Released on Sep 13, 2012
Analyze ABySS multi-k-assembled shotgun transcriptome data.
New in this release: Lowered contig size filtering cutoff from 2k-1 to 2k-10; various improvement to fusions and indel code (see ChangeLog)
TASR 1.4
Released on Sep 12, 2012
Targeted Assembly of Sequence Reads
New in this release: Ability to interrogate sequence reads in bam files
Satellog 1.0
Released on Aug 17, 2012
A database for the identification and prioritization of satellite repeats in disease association studies
New in this release: First release of the web site and services
JAGuaR 1.7.6
Released on Aug 07, 2012
Junction Alignment to Genome for Repositioning RNA-seq Reads
New in this release: First release of JAGuaR
ABySS-Explorer 1.3.4
Released on Jul 20, 2012
A sequence assembly visualization tool
New in this release: Version 1.3.4 supports assembly files from ABySS 1.3.4.
HLAminer 1.0.5
Released on Jun 01, 2012
Derivation of HLA class I and II predictions from shotgun sequence datasets
New in this release: initial release
Plone Software Center