GSC Software Centre
Currently listing 26 projects with 60 releases.
Bioinformatic Software, Scripts and Tools
Lastest GSC Software Releases
ABySS 1.2.2
Released on Aug 25, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Merge contigs after popping bubbles. Handle multi-line FASTA sequences. Report the amount of memory used.
SSAKE 3.6
Released on Aug 25, 2010
SSAKE is a genomics application for assembling millions of very short DNA sequences.
New in this release: v3.6 accepts an infinite number of sequence size libraries and offers preliminary support for paired-end Sanger reads.
MiRNA Profiling 0.2.5
Released on Aug 05, 2010
Profile the content of a miRNA sequencing run.
New in this release: This releases contains a major bug fix in reporting star strand miRNAs introduced in v0.2.4's new annotations.
MiRNA Profiling 0.2.4
Released on Jul 19, 2010
Profile the content of a miRNA sequencing run.
New in this release: This release fixes some major bugs in the coordinate based annotation of miRNA arms and the tracking of cross-mapped miRNAs. Annotations are also improved with ...
ABySS 1.2.1
Released on Jul 12, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Handle mate pair libraries with reverse-forward orientation as produced by circular, large-fragment libraries. Distance estimates are improved.
MiRNA Profiling 0.2.2
Released on Jun 01, 2010
Profile the content of a miRNA sequencing run.
New in this release: First public release.
ABySS-Explorer 1.0.1
Released on Jun 01, 2010
A sequence assembly visualization tool
New in this release: Fixed bug causing errors when loading some ABySS graphs.
SSAKE 3.5
Released on May 28, 2010
SSAKE is a genomics application for assembling millions of very short DNA sequences.
New in this release: v3.5+ Uses mate pairs to help resolve repeats (preventing contig misassemblies) at run time and attempts to force-fill gaps with redundant sequences (improves ...
ABySS 1.2.0
Released on May 26, 2010
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
New in this release: Scaffold over gaps in coverage and unresolved repeats. Read sequence from SAM and BAM files. Set q=3 by default. Set E=0 when coverage is low (<2). Generate a ...
Trans-ABySS 0.2
Released on May 26, 2010
Software package for Trans-ABySS
New in this release: Addition of scripts for novel poly-adenylation site detection and novel anomalous contig detection.
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