[Chinook] Version 1.0 release
Stephen Montgomery
smontgom at bcgsc.bc.ca
Mon Dec 6 12:43:29 PST 2004
Hi -
We have put out a 1.0 release of Chinook from
http://smweb.bcgsc.bc.ca/chinook/index.html
There are tarballs from this site with the source. As well as CVS.
Alternately, Chinook 1.0 can be run over web start.
Some of the new features include:
1. A human-friendly interface (Visual indicators to help job submission)
2. The ability to save and reload submitted jobs (Chinook doesn't
always need to be running)
3. Support for JASPAR database
<http://jaspar.cgb.ki.se/cgi-bin/jaspar_db.pl> and TFBS
<http://forkhead.cgb.ki.se/TFBS/> Matrices
4. Integrated Bug/Feature Submission
5. Java 1.5 compatible
6. New programming model for defining bioinformatics objects (Using
dynamic class-loading)
7. More Perl functionality and test scripts
8. Advanced report monitoring features, see the STDOUT and STDERR
from the server
9. Extensively customizable file upload/download utilities via the
BCGSC's FileWire
10. Over 100 pages of user and developer documentation
11. CVS hosted by java.net
We are always interested in helping set-up servers or adding services.
We currently have two servers that you can fire requests against.
Cheers,
Stephen
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