Summary page for comparison: 'OLG01_TIC_vs_OLG05_PRI' (HS0709_vs_HS1086) - Project: Oligo


Download complete candidate list as tab delimited text file: OLG01_TIC_vs_OLG05_PRI.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 9,580 (of 49,867 possible genes)

DE Genes: 3,478

AE Genes: 7,427

Alternative Exon Usage (EU) Genes: 6,065

Alernative Exon Skipping (ES) Genes: 1,234

Alternative Exon Boundary (AB) Genes: 3,713

Intron Retention (IR) Genes: 485

Cryptic Exon (CE) Genes: 870


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.22AP000692.1'processed_transcript'12AELoss-703.443EU AB E1a_E2a0
2214.49AASS'protein_coding'739AELoss-323.582AB E24_Dc0
3314.04AC128648.1'protein_coding'18AELoss-664.725EU AB E2a_E3a100.00
4413.81AC133435.2'lincRNA'12AELoss-2214.953EU AB E1a_E2a0
5513.60MSH5'protein_coding'2878AELoss-361.9519EU ES AB CE E15a_E16a42.86
6613.33RP1-12G14.4'pseudogene'22AELoss-2227.282AB E1_Ab0
7713.25C19orf29'protein_coding'422AELoss-281.2012EU AB E4_Aa60.00
8813.17GTPBP5'protein_coding'1330AELoss-376.8514EU AB E3_Db40.00
9913.15AC007216.1'pseudogene'13AELoss-297.585EU AB E2a_E3a0.00
101013.10ST3GAL5'protein_coding'1535AELoss-190.587EU AB E17_Aa66.67
111112.93FAM116A'protein_coding'938AELoss-242.412AB E21_Ab0
121212.88AIFM1'protein_coding'624AELoss-224.013EU ES AB E11_Aa0.00
131312.78LIMK1'protein_coding'931AELoss-109.485EU ES AB E16_Aa50.00
141412.76AC138409.3'protein_coding'28AELoss-95.997EU AB E5a_E6a50.00
151512.71FARP1'protein_coding'839AELoss-261.1911EU ES AB IR CE E20_Aa0.00
161612.55FAM73A'protein_coding'422AELoss-142.527EU AB E10f_E11a50.00
171712.34ZNF283'protein_coding'942AELoss-184.6113EU AB CE E17_Db33.33
181812.31CHCHD2'protein_coding'26AELoss-129.804EU AB E1_Ab100.00
191911.97DHX34'protein_coding'633AELoss-197.301AB E15_Aa0
202011.91ELK4'protein_coding'38AELoss-135.691AB E2_Da0
212111.89MORC2'protein_coding'638AELoss-106.455EU ES AB E2_Da50.00
222211.78RPS25'protein_coding'15AEGain56.785EU E2a_E3a75.00
232311.77MRPS18B'protein_coding'513AELoss-99.165EU AB E2_Dd33.33
242411.72CYB561D1'protein_coding'815AELoss-222.512AB E2_Db0
252511.70MLL3'protein_coding'1899AELoss-189.2814EU AB CE E62a_E63a20.00
262611.64SLC25A17'protein_coding'1644AELoss-120.904EU AB E3_Da0
272711.60PANK1'protein_coding'720AELoss-105.521AB E4_Da0
282811.53ARMC10'protein_coding'1024AELoss-94.9410EU ES AB CE E9_Aa50.00
292911.53C21orf58'protein_coding'1331AELoss-113.612AB E9_Dd0
303011.48AC005197.3'protein_coding'12AELoss-130.922AB E1_Da0
313111.44ZNF684'protein_coding'614AELoss-132.583AB E5_Ab0
323211.37NUDT1'protein_coding'1320AELoss-51.193EU AB E4_Da0.00
333311.29MAP2K2'protein_coding'826AELoss-130.544EU AB E7a_E7c50.00
343411.24C7orf46'protein_coding'821AELoss-154.014EU ES AB E3_Da0.00
353511.18C7orf44'protein_coding'2047AELoss-143.2411EU ES AB CE E11_Df20.00
363611.15AC034193.2'lincRNA'12AELoss-107.651AB E1_Da0
373711.15PTPRZ1'protein_coding'1255AELoss-100.5830EU ES AB E16_Ad73.08
383811.10RWDD2B'protein_coding'718AELoss-97.695EU AB E2_Da50.00
393911.05DOCK4'protein_coding'2187AELoss-120.303EU AB E51_Aa0
404010.99TOP2A'protein_coding'557AELoss-43.2213EU AB E19_Da22.22
414110.95OGT'protein_coding'1246AELoss-83.528EU ES AB E4_Da0.00
424210.92CROCCL1'processed_transcript'420AELoss-97.115ES AB CE E11_Db0
434310.91SLC25A15'protein_coding'720AELoss-112.452AB E9_Aa0
444410.84RANBP2'protein_coding'1149AELoss-125.224EU AB E13_Dc0.00
454510.76DHTKD1'protein_coding'627AELoss-117.813EU AB E16_Db0
464610.74CHN2'protein_coding'2664AELoss-77.4511EU AB E7_Aa0.00
474710.72AKT2'protein_coding'2672AELoss-70.2510EU ES AB E9_Aa0.00
484810.60C10orf18'protein_coding'1239AELoss-72.4622EU AB E23_Db52.94
494910.60PHACTR4'protein_coding'729AELoss-117.869EU ES AB E19_Dc33.33
505010.51PHC3'protein_coding'2459AELoss-81.0410EU AB E6_Da33.33
515110.42MKRN1'protein_coding'1644AELoss-51.636EU ES AB E9_Aa100.00
525210.41NMNAT1'protein_coding'615AELoss-44.8810EU ES AB ENST0000046268650.00
535310.37AC012170.2'lincRNA'15AELoss-59.4411EU AB IR E3a_E4a100.00
545410.37AC087742.1'lincRNA'16AELoss-127.117EU AB E1a_E2a100.00
555510.34RPS10'protein_coding'714AEGain69.816EU ES E4a_E5a40.00
565610.30AC007620.1'processed_transcript'12AELoss-52.411AB E1_Da0
575710.24SNORA72'lincRNA'12AELoss-89.621AB E1_Da0
585810.02PQLC2'protein_coding'923AELoss-102.577EU AB E10_Aa50.00
595910.01KIAA1704'protein_coding'824AELoss-62.777EU ES AB E13_Aa0.00
60609.99CTC-398G3.2'pseudogene'24AELoss-41.822AB E1_Ab0
61619.98FIS1'protein_coding'919AELoss-466.425EU ES AB E5_Aa33.33
62629.98CDC16'protein_coding'1237AELoss-39.316EU AB E18_Aa50.00
63639.96MMADHC'protein_coding'621AELoss-85.805EU ES AB E8_Da50.00
64649.92PRPF3'protein_coding'829AELoss-332.502AB E14_Aa0
65659.87NHP2L1'protein_coding'1022AELoss-41.214EU AB E8_Dc100.00
66669.70ZNF730'protein_coding'15AELoss-66.271AB E5_Aa0
67679.66PHYH'protein_coding'924AELoss-15.183EU AB E5_Db100.00
68689.63SLC2A11'protein_coding'3070AELoss-76.6210AB E13_Df0
69699.61NDUFS2'protein_coding'1545AELoss-40.866EU ES AB E13_Aa50.00
70709.59TRIM33'protein_coding'727AELoss-72.446EU AB CE E16_Db0.00
71719.55AC009065.2'lincRNA'12AELoss-76.965EU AB IR E1a_E2a0
72729.53AC121253.1'protein_coding'46AELoss-64.694EU AB E1_Dd0
73739.42CD46'protein_coding'2736AELoss-33.806EU AB E5_Ae33.33
74749.40AC093616.1'processed_transcript'12AELoss-76.292AB E1_Da0
75759.36MED24'protein_coding'1350AELoss-75.4111EU AB E2_Aa50.00
76769.33AL136180.1'protein_coding'12AELoss-59.741AB E2_Aa0
77779.30THOC7'protein_coding'822AELoss-34.164EU AB E2_Aa100.00
78789.29KLHDC8A'protein_coding'414AELoss-11.615EU AB E9_Da33.33
79799.25C1orf151'protein_coding'1128AELoss-47.9811EU AB IR E3_Aa0.00
80809.22DHX40'protein_coding'325AELoss-55.433EU AB E10_Aa0
81819.22EIF2B3'protein_coding'1131AELoss-49.257EU AB E8_Db0
82829.20EEF1A1'protein_coding'1131AELoss-304.1816EU AB ER6a27.27
83839.19SON'protein_coding'2558AELoss-48.928EU AB E3_Da25.00
84849.16ING4'protein_coding'2346AELoss-204.484EU AB E4_Aa50.00
85859.15PDHB'protein_coding'1034AELoss-53.6410EU AB E1_Dg42.86
86869.15TAF13'protein_coding'27AELoss-49.263EU AB E5_Aa0
87879.11CNOT10'protein_coding'1952AELoss-166.5718EU ES AB E21_Ab42.86
88889.11ATL2'protein_coding'1744AELoss-34.659EU AB E4_Da0.00
89899.10GS1-174L6.1'processed_transcript'12AELoss-55.792EU AB E1a_E2a0
90909.08SEPT2'protein_coding'47102AELoss-310.522EU AB E12_Da0
91919.06TMEM111'protein_coding'517AELoss-63.583AB E2_Aa0
92929.06RABGEF1'protein_coding'1028AELoss-43.438EU ES AB CE E9a_E10a0.00
93939.05MLLT6'protein_coding'1038AELoss-240.103EU AB E13_Db0
94949.04TMEM104'protein_coding'213AELoss-61.574EU ES AB CE E3_Da100.00
95959.04RPL7A'protein_coding'1127AELoss-237.818EU AB E2_Ab33.33
96968.98HMGB1'protein_coding'1227AELoss-172.2612EU ES AB E6b_E7b40.00
97978.97TRAPPC2'protein_coding'819AELoss-62.443EU AB E5a_E5b0
98988.95RNF121'protein_coding'418AELoss-29.061AB E4_Aa0
99998.94IDE'protein_coding'844AELoss-29.215EU AB E5_Da0
1001008.89AC004447.1'lincRNA'12AELoss-57.092EU AB E1a_E2a0
1011018.82PARP1'protein_coding'1042AELoss-57.797EU AB ER24c33.33
1021028.81ANO10'protein_coding'1952AELoss-51.676EU AB E4_Ab0.00
1031038.80GFAP'protein_coding'411DELoss-445.010N/AGFAPN/A
1041048.79AC004086.1'protein_coding'28AELoss-55.616EU E2a_E3a40.00
1051058.74PPIL2'protein_coding'1658AELoss-16.9325EU ES AB IR E8_Da33.33
1061068.74AC133555.1'protein_coding'14AELoss-167.063EU AB E3a_E4a0
1071078.73CXorf57'protein_coding'726AELoss-44.693AB E9_Aa0
1081088.72BMS1P1'pseudogene'316AELoss-76.254EU AB E9_Aa100.00
1091098.70PKD1'protein_coding'26115AELoss-147.5422EU ES AB E28_Db9.09
1101108.70NRSN2'protein_coding'514AELoss-32.352AB E6_Db0
1111118.70ARIH2'protein_coding'3576AELoss-48.7523EU ES AB E5_Dd41.67
1121128.66ETV5'protein_coding'1439AELoss-31.225EU ES AB E8_Db0.00
1131138.65POLR2B'protein_coding'1347AELoss-43.0114EU AB IR E3_Ab20.00
1141148.61KDELC2'protein_coding'311AELoss-24.212AB E7_Da0
1151158.58AC073940.1'pseudogene'12AELoss-121.743EU AB E2_Aa0
1161168.58C4orf36'protein_coding'313AELoss-52.543AB E9_Dc0
1171178.55AGRN'protein_coding'1054AELoss-39.216EU ES AB E25_Aa33.33
1181188.55RPS27'protein_coding'410AELoss-40.344EU E2b_E3a0.00
1191198.55AC026271.1'processed_transcript'210AELoss-39.151AB E8_Aa0
1201208.54RAB3GAP2'protein_coding'1155AELoss-24.485EU AB CE E37_Aa0
1211218.49CC2D1A'protein_coding'535AELoss-27.753AB E24_Aa0
1221228.47HMGN1'protein_coding'2146AELoss-36.8913EU AB ER5j25.00
1231238.45FAM107A'protein_coding'919DELoss-349.240N/AFAM107AN/A
1241248.44P4HB'protein_coding'1541AELoss-27.736EU AB E8a_E8c0
1251258.43RETSAT'protein_coding'1030AELoss-48.914AB E6_Da0
1261268.43ZNF3'protein_coding'1639AELoss-45.6312EU AB E4_Dc28.57
1271278.42MDM2'protein_coding'2236AELoss-19.173EU AB ER14c100.00
1281288.41GSDMB'protein_coding'1428AELoss-34.099EU AB CE E2_Ad66.67
1291298.40SEPT7'protein_coding'1433AELoss-40.858EU ES AB CE E1b_E5a40.00
1301308.39EIF4G3'protein_coding'1663AELoss-39.1911EU ES AB CE E4_Aa20.00
1311318.38AL354696.3'lincRNA'12AELoss-109.962AB E1_Da0
1321328.36HBEGF'protein_coding'310AELoss-132.542EU AB E5_Aa0
1331338.36AMT'protein_coding'2554AELoss-29.688EU AB E2_Aa66.67
1341348.32RPL13A'protein_coding'1235AEGain42.1513EU AB E2c_E2e40.00
1351358.29HLA-B'protein_coding'1029AELoss-235.9310EU AB E1f_E1o0.00
1361368.29HEATR3'protein_coding'620AELoss-33.593EU AB E13_Ab0.00
1371378.26H6PD'protein_coding'27AELoss-139.513EU AB E5_Ac0
1381388.26AP000662.1'lincRNA'12AELoss-43.163EU AB E1_Da0
1391398.25MAP3K7IP2'protein_coding'619AELoss-142.133EU AB E5_Aa0
1401408.24AFG3L1'processed_transcript'1841AELoss-107.224EU AB E2_Dc0.00
1411418.21AL035420.2'lincRNA'12AEGain124.462EU AB ER2a0
1421428.21AP002770.2'lincRNA'13AELoss-29.982AB E2_Da0
1431438.21ACSS2'protein_coding'2770AELoss-34.9215EU AB IR CE E9_Aa25.00
1441448.21WDR32'protein_coding'514AELoss-35.476EU AB E8_Db33.33
1451458.20AKR1B1'protein_coding'1641AELoss-116.615EU AB E5_Ab0.00
1461468.20COPS7B'protein_coding'2247AELoss-50.476EU AB IR E4_Ae100.00
1471478.17AC013283.2'lincRNA'12AELoss-34.961AB E1_Da0
1481488.15IDH1'protein_coding'1338AELoss-31.714EU ES AB E2_Aa50.00
1491498.14MBP'protein_coding'2860DELoss-282.810N/AMBPN/A
1501508.13AC138951.4'pseudogene'12AELoss-44.103EU AB E2_Aa100.00
1511518.12AL671710.1'lincRNA'15AELoss-21.103EU ES E1a_E5a100.00
1521528.10CD74'protein_coding'310DELoss-275.310N/ACD74N/A
1531538.10C9orf80'protein_coding'720AELoss-105.477EU AB E3_Db0.00
1541548.10POLR2H'protein_coding'1433AELoss-31.686EU AB E6_Aa0.00
1551558.10EIF4B'protein_coding'520AELoss-21.198EU AB E14a_E15a40.00
1561568.10ABHD14A'protein_coding'1140AELoss-152.862AB E5_Ab0
1571578.08CRTC2'protein_coding'933AELoss-118.524EU ES AB E8_Aa0.00
1581588.07AC018633.1'pseudogene'226AELoss-32.097EU AB E18_Aa0.00
1591598.04CCNL2'protein_coding'2158AELoss-21.684EU AB E9_Da0
1601608.03MTRF1'protein_coding'1133AELoss-31.475EU ES AB E6_Da50.00
1611618.02POLM'protein_coding'2049AELoss-29.433EU AB E6_Ab0.00
1621628.02SEC63'protein_coding'1244AELoss-39.419EU ES AB E11_Aa0.00
1631638.00MSH6'protein_coding'822AELoss-27.773ES AB E5_Da0
1641648.00MGST3'protein_coding'1431AELoss-39.3310EU ES AB CE E1_Ag25.00
1651657.99DHCR24'protein_coding'212AELoss-26.442EU AB E6a_E7a0
1661667.98VCAN'protein_coding'518AELoss-93.7611EU AB IR E13a_E14a0
1671677.98ZNRF3'protein_coding'416AELoss-37.883AB E5_Aa0
1681687.97STRBP'protein_coding'1042AELoss-91.143EU AB E2_Aa0
1691697.96NOP14'protein_coding'323AELoss-31.784AB IR CE E19_Aa0
1701707.95AC010323.2'lincRNA'12AELoss-99.213EU AB E1a_E2a0
1711717.95SFRS18'protein_coding'1032AELoss-93.809EU AB E3_Dc0.00
1721727.94BX322613.2'protein_coding'25DEGain246.350N/ABX322613.2N/A
1731737.94FTSJ2'protein_coding'614AELoss-35.771AB E5_Da0
1741747.93RPL9'protein_coding'312AEGain23.0611EU AB E3a_E4a50.00
1751757.92DBR1'protein_coding'414AELoss-38.382EU AB E4_Da0
1761767.90ZNF791'protein_coding'410AELoss-19.661AB E5_Dd0
1771777.90DLL3'protein_coding'210AELoss-209.042EU E4a_E5a0.00
1781787.89ALG3'protein_coding'1638AELoss-26.865EU AB E5_Df50.00
1791797.89GFPT1'protein_coding'530AELoss-21.691AB E3_Da0
1801807.88AL691432.1'lincRNA'14AELoss-88.604EU AB E3_Aa0
1811817.87AC145132.1'pseudogene'13AELoss-34.061AB E3_Aa0
1821827.86SUPT16H'protein_coding'126AELoss-20.543EU E16a_E17a0.00
1831837.86AC007308.1'processed_transcript'12AELoss-29.582EU AB ENST000004307190
1841847.84CCDC12'protein_coding'925AELoss-40.753EU AB E4_Db100.00
1851857.84XXyac-R12DG2.3'protein_coding'416AELoss-134.528AB CE E2_Aa0
1861867.83XPO1'protein_coding'3188AELoss-19.0722EU ES AB E6_Aa40.00
1871877.81SNRNP35'protein_coding'513AELoss-35.746EU AB E5_Ad0
1881887.79AC024075.1'lincRNA'12AELoss-132.991AB E1_Da0
1891897.79GPR17'protein_coding'713DELoss-221.670N/AGPR17N/A
1901907.78TAPBPL'protein_coding'218AELoss-97.997EU ES AB E14a_E15a0.00
1911917.76NLGN4X'protein_coding'720AELoss-141.773AB CE E5_Aa0
1921927.76HSPB8'protein_coding'13DELoss-216.280N/AHSPB8N/A
1931937.75AC093310.1'protein_coding'210DELoss-215.390N/AAC093310.1N/A
1941947.75IPP'protein_coding'517AELoss-24.754ES AB E11_Aa0
1951957.74WDR44'protein_coding'835AELoss-36.193EU AB E22_Da0.00
1961967.74PPOX'protein_coding'2252AELoss-32.978EU AB E7_Aa0.00
1971977.74ZNF445'protein_coding'730AELoss-25.092AB E2_Da0
1981987.73AIMP2'protein_coding'412AELoss-30.241AB E3_Aa0
1991997.72ZNF425'protein_coding'512AELoss-77.772AB E5_Ab0
2002007.68RP11-30L4.1'processed_transcript'12AELoss-24.951AB E2_Aa0
2012017.68DPH5'protein_coding'2054AELoss-22.036EU AB ER18c0.00
2022027.67LAMP1'protein_coding'516AELoss-124.133EU AB E4a_E5a0.00
2032037.66ARFGAP3'protein_coding'1228AELoss-25.024EU AB E2_Da0.00
2042047.65RP11-179H18.3'processed_transcript'12AELoss-95.151AB E1_Da0
2052057.63HK1'protein_coding'2460AELoss-24.868EU AB E6_Aa50.00
2062067.62IDH3B'protein_coding'1541AELoss-19.774EU E5c_E5c0.00
2072077.61WISP1'protein_coding'45DEGain195.380N/AWISP1N/A
2082087.60HNRNPA1'protein_coding'314AEGain31.048EU E2a_E3a57.14
2092097.57GSTM4'protein_coding'1537AELoss-32.414EU ES AB E3a_E7a50.00
2102107.55TOR1AIP2'protein_coding'616AELoss-26.553EU ES AB E4_Aa0.00
2112117.53PLEKHA2'protein_coding'214AELoss-21.042EU ER12b100.00
2122127.52AC130686.3'protein_coding'517AELoss-14.254EU AB ENST000004650970.00
2132137.51MLC1'protein_coding'722AELoss-115.855EU ES AB E7a_E9a0.00
2142147.51SCHIP1'protein_coding'1636AELoss-18.708EU AB ER1b25.00
2152157.50SNRNP25'protein_coding'719AELoss-64.038EU AB E2_Aa60.00
2162167.50GEFT'protein_coding'830AELoss-21.432EU AB E13_Ab0
2172177.49RPS9'protein_coding'1323AELoss-112.717EU ER1h33.33
2182187.49TNR'protein_coding'627DELoss-179.780N/ATNRN/A
2192197.47NTRK2'protein_coding'1132DELoss-177.050N/ANTRK2N/A
2202207.45MREG'protein_coding'616AELoss-28.213AB E9_Aa0
2212217.45AC079316.2'lincRNA'12AELoss-16.932AB E2_Aa0
2222227.45ARL6IP5'protein_coding'718AELoss-33.469EU ES AB E5_Ab33.33
2232237.44DCUN1D2'protein_coding'1229AELoss-23.384EU AB CE E10_Db0
2242247.44RINT1'protein_coding'832AELoss-16.389EU ES AB IR E5_Aa100.00
2252257.43MAST2'protein_coding'1568AELoss-24.041AB E7_Da0
2262267.43MCFD2'protein_coding'1733AELoss-23.117EU AB E6_Da0.00
2272277.41PSME2'protein_coding'418AELoss-25.583EU ES AB E5a_E6c0.00
2282287.41AC007390.4'protein_coding'718AELoss-21.704EU AB E7_Ad100.00
2292297.37ZNF90'protein_coding'1467AELoss-16.0444EU ES AB CE E16g_E16h36.36
2302307.37LYRM4'protein_coding'819AELoss-43.034EU AB E3_Da100.00
2312317.37FUS'protein_coding'1236AELoss-63.087EU AB E6a_E7b0.00
2322327.35NGDN'protein_coding'313AELoss-18.032EU E5a_E6a0.00
2332337.33SLC27A1'protein_coding'418AELoss-19.171AB E8_Aa0
2342347.33AC010733.5'processed_transcript'12AELoss-58.242EU AB E2_Aa0
2352357.33HSPD1'protein_coding'1443AELoss-15.9110EU ES AB E5_Db33.33
2362367.33TIMP3'protein_coding'28DELoss-160.430N/ATIMP3N/A
2372377.33AL121809.2'protein_coding'15AELoss-106.233EU AB E3_Aa0
2382387.31RPS6KA3'protein_coding'839AELoss-13.456EU AB E7_Db75.00
2392397.31AC133555.7'protein_coding'12AELoss-74.313EU AB E1a_E2a0
2402407.31ZFP30'protein_coding'413AELoss-10.445EU AB E6_Ac100.00
2412417.31NDUFB5'protein_coding'1640AELoss-25.5415EU ES AB E7_Aa72.73
2422427.30AC015815.5'pseudogene'12AELoss-24.932EU AB E2_Aa0
2432437.30MFAP4'protein_coding'38DEGain158.002EU MFAP40.00
2442447.29RPS29'protein_coding'24AEGain57.043EU ES E2a_E3a100.00
2452457.29HNRNPC'protein_coding'818AELoss-23.698EU ES AB E2_Da25.00
2462467.28HBB'protein_coding'411DELoss-155.500N/AHBBN/A
2472477.28RPS3A'protein_coding'16AEGain72.308EU ES E2a_E3a71.43
2482487.28DHDDS'protein_coding'1630AELoss-20.392EU AB E8_Da0
2492497.27ACTA2'protein_coding'717AELoss-57.842EU AB E4_Db0
2502507.27MATR3'protein_coding'525AEGain25.7110EU ES AB ER4a37.50
2512517.27RAB1B'protein_coding'313AELoss-44.624EU ENST000003149650.00


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.22AP000692.1'processed_transcript'12AELoss-703.443EU AB E1a_E2a0
2214.49AASS'protein_coding'739AELoss-323.582AB E24_Dc0
3314.04AC128648.1'protein_coding'18AELoss-664.725EU AB E2a_E3a100.00
4413.81AC133435.2'lincRNA'12AELoss-2214.953EU AB E1a_E2a0
5513.60MSH5'protein_coding'2878AELoss-361.9519EU ES AB CE E15a_E16a42.86
6613.33RP1-12G14.4'pseudogene'22AELoss-2227.282AB E1_Ab0
7713.25C19orf29'protein_coding'422AELoss-281.2012EU AB E4_Aa60.00
8813.17GTPBP5'protein_coding'1330AELoss-376.8514EU AB E3_Db40.00
9913.15AC007216.1'pseudogene'13AELoss-297.585EU AB E2a_E3a0.00
101013.10ST3GAL5'protein_coding'1535AELoss-190.587EU AB E17_Aa66.67
111112.93FAM116A'protein_coding'938AELoss-242.412AB E21_Ab0
121212.88AIFM1'protein_coding'624AELoss-224.013EU ES AB E11_Aa0.00
131312.78LIMK1'protein_coding'931AELoss-109.485EU ES AB E16_Aa50.00
141412.76AC138409.3'protein_coding'28AELoss-95.997EU AB E5a_E6a50.00
151512.71FARP1'protein_coding'839AELoss-261.1911EU ES AB IR CE E20_Aa0.00
161612.55FAM73A'protein_coding'422AELoss-142.527EU AB E10f_E11a50.00
171712.34ZNF283'protein_coding'942AELoss-184.6113EU AB CE E17_Db33.33
181812.31CHCHD2'protein_coding'26AELoss-129.804EU AB E1_Ab100.00
191911.97DHX34'protein_coding'633AELoss-197.301AB E15_Aa0
202011.91ELK4'protein_coding'38AELoss-135.691AB E2_Da0
212111.89MORC2'protein_coding'638AELoss-106.455EU ES AB E2_Da50.00
222211.78RPS25'protein_coding'15AEGain56.785EU E2a_E3a75.00
232311.77MRPS18B'protein_coding'513AELoss-99.165EU AB E2_Dd33.33
242411.72CYB561D1'protein_coding'815AELoss-222.512AB E2_Db0
252511.70MLL3'protein_coding'1899AELoss-189.2814EU AB CE E62a_E63a20.00
262611.64SLC25A17'protein_coding'1644AELoss-120.904EU AB E3_Da0
272711.60PANK1'protein_coding'720AELoss-105.521AB E4_Da0
282811.53ARMC10'protein_coding'1024AELoss-94.9410EU ES AB CE E9_Aa50.00
292911.53C21orf58'protein_coding'1331AELoss-113.612AB E9_Dd0
303011.48AC005197.3'protein_coding'12AELoss-130.922AB E1_Da0
313111.44ZNF684'protein_coding'614AELoss-132.583AB E5_Ab0
323211.37NUDT1'protein_coding'1320AELoss-51.193EU AB E4_Da0.00
333311.29MAP2K2'protein_coding'826AELoss-130.544EU AB E7a_E7c50.00
343411.24C7orf46'protein_coding'821AELoss-154.014EU ES AB E3_Da0.00
353511.18C7orf44'protein_coding'2047AELoss-143.2411EU ES AB CE E11_Df20.00
363611.15AC034193.2'lincRNA'12AELoss-107.651AB E1_Da0
373711.15PTPRZ1'protein_coding'1255AELoss-100.5830EU ES AB E16_Ad73.08
383811.10RWDD2B'protein_coding'718AELoss-97.695EU AB E2_Da50.00
393911.05DOCK4'protein_coding'2187AELoss-120.303EU AB E51_Aa0
404010.99TOP2A'protein_coding'557AELoss-43.2213EU AB E19_Da22.22
414110.95OGT'protein_coding'1246AELoss-83.528EU ES AB E4_Da0.00
424210.92CROCCL1'processed_transcript'420AELoss-97.115ES AB CE E11_Db0
434310.91SLC25A15'protein_coding'720AELoss-112.452AB E9_Aa0
444410.84RANBP2'protein_coding'1149AELoss-125.224EU AB E13_Dc0.00
454510.76DHTKD1'protein_coding'627AELoss-117.813EU AB E16_Db0
464610.74CHN2'protein_coding'2664AELoss-77.4511EU AB E7_Aa0.00
474710.72AKT2'protein_coding'2672AELoss-70.2510EU ES AB E9_Aa0.00
484810.60C10orf18'protein_coding'1239AELoss-72.4622EU AB E23_Db52.94
494910.60PHACTR4'protein_coding'729AELoss-117.869EU ES AB E19_Dc33.33
505010.51PHC3'protein_coding'2459AELoss-81.0410EU AB E6_Da33.33
515110.42MKRN1'protein_coding'1644AELoss-51.636EU ES AB E9_Aa100.00
525210.41NMNAT1'protein_coding'615AELoss-44.8810EU ES AB ENST0000046268650.00
535310.37AC012170.2'lincRNA'15AELoss-59.4411EU AB IR E3a_E4a100.00
545410.37AC087742.1'lincRNA'16AELoss-127.117EU AB E1a_E2a100.00
555510.34RPS10'protein_coding'714AEGain69.816EU ES E4a_E5a40.00
565610.30AC007620.1'processed_transcript'12AELoss-52.411AB E1_Da0
575710.24SNORA72'lincRNA'12AELoss-89.621AB E1_Da0
585810.02PQLC2'protein_coding'923AELoss-102.577EU AB E10_Aa50.00
595910.01KIAA1704'protein_coding'824AELoss-62.777EU ES AB E13_Aa0.00
60609.99CTC-398G3.2'pseudogene'24AELoss-41.822AB E1_Ab0
61619.98FIS1'protein_coding'919AELoss-466.425EU ES AB E5_Aa33.33
62629.98CDC16'protein_coding'1237AELoss-39.316EU AB E18_Aa50.00
63639.96MMADHC'protein_coding'621AELoss-85.805EU ES AB E8_Da50.00
64649.92PRPF3'protein_coding'829AELoss-332.502AB E14_Aa0
65659.87NHP2L1'protein_coding'1022AELoss-41.214EU AB E8_Dc100.00
66669.70ZNF730'protein_coding'15AELoss-66.271AB E5_Aa0
67679.66PHYH'protein_coding'924AELoss-15.183EU AB E5_Db100.00
68689.63SLC2A11'protein_coding'3070AELoss-76.6210AB E13_Df0
69699.61NDUFS2'protein_coding'1545AELoss-40.866EU ES AB E13_Aa50.00
70709.59TRIM33'protein_coding'727AELoss-72.446EU AB CE E16_Db0.00
71719.55AC009065.2'lincRNA'12AELoss-76.965EU AB IR E1a_E2a0
72729.53AC121253.1'protein_coding'46AELoss-64.694EU AB E1_Dd0
73739.42CD46'protein_coding'2736AELoss-33.806EU AB E5_Ae33.33
74749.40AC093616.1'processed_transcript'12AELoss-76.292AB E1_Da0
75759.36MED24'protein_coding'1350AELoss-75.4111EU AB E2_Aa50.00
76769.33AL136180.1'protein_coding'12AELoss-59.741AB E2_Aa0
77779.30THOC7'protein_coding'822AELoss-34.164EU AB E2_Aa100.00
78789.29KLHDC8A'protein_coding'414AELoss-11.615EU AB E9_Da33.33
79799.25C1orf151'protein_coding'1128AELoss-47.9811EU AB IR E3_Aa0.00
80809.22DHX40'protein_coding'325AELoss-55.433EU AB E10_Aa0
81819.22EIF2B3'protein_coding'1131AELoss-49.257EU AB E8_Db0
82829.20EEF1A1'protein_coding'1131AELoss-304.1816EU AB ER6a27.27
83839.19SON'protein_coding'2558AELoss-48.928EU AB E3_Da25.00
84849.16ING4'protein_coding'2346AELoss-204.484EU AB E4_Aa50.00
85859.15PDHB'protein_coding'1034AELoss-53.6410EU AB E1_Dg42.86
86869.15TAF13'protein_coding'27AELoss-49.263EU AB E5_Aa0
87879.11CNOT10'protein_coding'1952AELoss-166.5718EU ES AB E21_Ab42.86
88889.11ATL2'protein_coding'1744AELoss-34.659EU AB E4_Da0.00
89899.10GS1-174L6.1'processed_transcript'12AELoss-55.792EU AB E1a_E2a0
90909.08SEPT2'protein_coding'47102AELoss-310.522EU AB E12_Da0
91919.06TMEM111'protein_coding'517AELoss-63.583AB E2_Aa0
92929.06RABGEF1'protein_coding'1028AELoss-43.438EU ES AB CE E9a_E10a0.00
93939.05MLLT6'protein_coding'1038AELoss-240.103EU AB E13_Db0
94949.04TMEM104'protein_coding'213AELoss-61.574EU ES AB CE E3_Da100.00
95959.04RPL7A'protein_coding'1127AELoss-237.818EU AB E2_Ab33.33
96968.98HMGB1'protein_coding'1227AELoss-172.2612EU ES AB E6b_E7b40.00
97978.97TRAPPC2'protein_coding'819AELoss-62.443EU AB E5a_E5b0
98988.95RNF121'protein_coding'418AELoss-29.061AB E4_Aa0
99998.94IDE'protein_coding'844AELoss-29.215EU AB E5_Da0
1001008.89AC004447.1'lincRNA'12AELoss-57.092EU AB E1a_E2a0
1011018.82PARP1'protein_coding'1042AELoss-57.797EU AB ER24c33.33
1021028.81ANO10'protein_coding'1952AELoss-51.676EU AB E4_Ab0.00
1031048.79AC004086.1'protein_coding'28AELoss-55.616EU E2a_E3a40.00
1041058.74PPIL2'protein_coding'1658AELoss-16.9325EU ES AB IR E8_Da33.33
1051068.74AC133555.1'protein_coding'14AELoss-167.063EU AB E3a_E4a0
1061078.73CXorf57'protein_coding'726AELoss-44.693AB E9_Aa0
1071088.72BMS1P1'pseudogene'316AELoss-76.254EU AB E9_Aa100.00
1081098.70PKD1'protein_coding'26115AELoss-147.5422EU ES AB E28_Db9.09
1091108.70NRSN2'protein_coding'514AELoss-32.352AB E6_Db0
1101118.70ARIH2'protein_coding'3576AELoss-48.7523EU ES AB E5_Dd41.67
1111128.66ETV5'protein_coding'1439AELoss-31.225EU ES AB E8_Db0.00
1121138.65POLR2B'protein_coding'1347AELoss-43.0114EU AB IR E3_Ab20.00
1131148.61KDELC2'protein_coding'311AELoss-24.212AB E7_Da0
1141158.58AC073940.1'pseudogene'12AELoss-121.743EU AB E2_Aa0
1151168.58C4orf36'protein_coding'313AELoss-52.543AB E9_Dc0
1161178.55AGRN'protein_coding'1054AELoss-39.216EU ES AB E25_Aa33.33
1171188.55RPS27'protein_coding'410AELoss-40.344EU E2b_E3a0.00
1181198.55AC026271.1'processed_transcript'210AELoss-39.151AB E8_Aa0
1191208.54RAB3GAP2'protein_coding'1155AELoss-24.485EU AB CE E37_Aa0
1201218.49CC2D1A'protein_coding'535AELoss-27.753AB E24_Aa0
1211228.47HMGN1'protein_coding'2146AELoss-36.8913EU AB ER5j25.00
1221248.44P4HB'protein_coding'1541AELoss-27.736EU AB E8a_E8c0
1231258.43RETSAT'protein_coding'1030AELoss-48.914AB E6_Da0
1241268.43ZNF3'protein_coding'1639AELoss-45.6312EU AB E4_Dc28.57
1251278.42MDM2'protein_coding'2236AELoss-19.173EU AB ER14c100.00
1261288.41GSDMB'protein_coding'1428AELoss-34.099EU AB CE E2_Ad66.67
1271298.40SEPT7'protein_coding'1433AELoss-40.858EU ES AB CE E1b_E5a40.00
1281308.39EIF4G3'protein_coding'1663AELoss-39.1911EU ES AB CE E4_Aa20.00
1291318.38AL354696.3'lincRNA'12AELoss-109.962AB E1_Da0
1301328.36HBEGF'protein_coding'310AELoss-132.542EU AB E5_Aa0
1311338.36AMT'protein_coding'2554AELoss-29.688EU AB E2_Aa66.67
1321348.32RPL13A'protein_coding'1235AEGain42.1513EU AB E2c_E2e40.00
1331358.29HLA-B'protein_coding'1029AELoss-235.9310EU AB E1f_E1o0.00
1341368.29HEATR3'protein_coding'620AELoss-33.593EU AB E13_Ab0.00
1351378.26H6PD'protein_coding'27AELoss-139.513EU AB E5_Ac0
1361388.26AP000662.1'lincRNA'12AELoss-43.163EU AB E1_Da0
1371398.25MAP3K7IP2'protein_coding'619AELoss-142.133EU AB E5_Aa0
1381408.24AFG3L1'processed_transcript'1841AELoss-107.224EU AB E2_Dc0.00
1391418.21AL035420.2'lincRNA'12AEGain124.462EU AB ER2a0
1401428.21AP002770.2'lincRNA'13AELoss-29.982AB E2_Da0
1411438.21ACSS2'protein_coding'2770AELoss-34.9215EU AB IR CE E9_Aa25.00
1421448.21WDR32'protein_coding'514AELoss-35.476EU AB E8_Db33.33
1431458.20AKR1B1'protein_coding'1641AELoss-116.615EU AB E5_Ab0.00
1441468.20COPS7B'protein_coding'2247AELoss-50.476EU AB IR E4_Ae100.00
1451478.17AC013283.2'lincRNA'12AELoss-34.961AB E1_Da0
1461488.15IDH1'protein_coding'1338AELoss-31.714EU ES AB E2_Aa50.00
1471508.13AC138951.4'pseudogene'12AELoss-44.103EU AB E2_Aa100.00
1481518.12AL671710.1'lincRNA'15AELoss-21.103EU ES E1a_E5a100.00
1491538.10C9orf80'protein_coding'720AELoss-105.477EU AB E3_Db0.00
1501548.10POLR2H'protein_coding'1433AELoss-31.686EU AB E6_Aa0.00
1511558.10EIF4B'protein_coding'520AELoss-21.198EU AB E14a_E15a40.00
1521568.10ABHD14A'protein_coding'1140AELoss-152.862AB E5_Ab0
1531578.08CRTC2'protein_coding'933AELoss-118.524EU ES AB E8_Aa0.00
1541588.07AC018633.1'pseudogene'226AELoss-32.097EU AB E18_Aa0.00
1551598.04CCNL2'protein_coding'2158AELoss-21.684EU AB E9_Da0
1561608.03MTRF1'protein_coding'1133AELoss-31.475EU ES AB E6_Da50.00
1571618.02POLM'protein_coding'2049AELoss-29.433EU AB E6_Ab0.00
1581628.02SEC63'protein_coding'1244AELoss-39.419EU ES AB E11_Aa0.00
1591638.00MSH6'protein_coding'822AELoss-27.773ES AB E5_Da0
1601648.00MGST3'protein_coding'1431AELoss-39.3310EU ES AB CE E1_Ag25.00
1611657.99DHCR24'protein_coding'212AELoss-26.442EU AB E6a_E7a0
1621667.98VCAN'protein_coding'518AELoss-93.7611EU AB IR E13a_E14a0
1631677.98ZNRF3'protein_coding'416AELoss-37.883AB E5_Aa0
1641687.97STRBP'protein_coding'1042AELoss-91.143EU AB E2_Aa0
1651697.96NOP14'protein_coding'323AELoss-31.784AB IR CE E19_Aa0
1661707.95AC010323.2'lincRNA'12AELoss-99.213EU AB E1a_E2a0
1671717.95SFRS18'protein_coding'1032AELoss-93.809EU AB E3_Dc0.00
1681737.94FTSJ2'protein_coding'614AELoss-35.771AB E5_Da0
1691747.93RPL9'protein_coding'312AEGain23.0611EU AB E3a_E4a50.00
1701757.92DBR1'protein_coding'414AELoss-38.382EU AB E4_Da0
1711767.90ZNF791'protein_coding'410AELoss-19.661AB E5_Dd0
1721777.90DLL3'protein_coding'210AELoss-209.042EU E4a_E5a0.00
1731787.89ALG3'protein_coding'1638AELoss-26.865EU AB E5_Df50.00
1741797.89GFPT1'protein_coding'530AELoss-21.691AB E3_Da0
1751807.88AL691432.1'lincRNA'14AELoss-88.604EU AB E3_Aa0
1761817.87AC145132.1'pseudogene'13AELoss-34.061AB E3_Aa0
1771827.86SUPT16H'protein_coding'126AELoss-20.543EU E16a_E17a0.00
1781837.86AC007308.1'processed_transcript'12AELoss-29.582EU AB ENST000004307190
1791847.84CCDC12'protein_coding'925AELoss-40.753EU AB E4_Db100.00
1801857.84XXyac-R12DG2.3'protein_coding'416AELoss-134.528AB CE E2_Aa0
1811867.83XPO1'protein_coding'3188AELoss-19.0722EU ES AB E6_Aa40.00
1821877.81SNRNP35'protein_coding'513AELoss-35.746EU AB E5_Ad0
1831887.79AC024075.1'lincRNA'12AELoss-132.991AB E1_Da0
1841907.78TAPBPL'protein_coding'218AELoss-97.997EU ES AB E14a_E15a0.00
1851917.76NLGN4X'protein_coding'720AELoss-141.773AB CE E5_Aa0
1861947.75IPP'protein_coding'517AELoss-24.754ES AB E11_Aa0
1871957.74WDR44'protein_coding'835AELoss-36.193EU AB E22_Da0.00
1881967.74PPOX'protein_coding'2252AELoss-32.978EU AB E7_Aa0.00
1891977.74ZNF445'protein_coding'730AELoss-25.092AB E2_Da0
1901987.73AIMP2'protein_coding'412AELoss-30.241AB E3_Aa0
1911997.72ZNF425'protein_coding'512AELoss-77.772AB E5_Ab0
1922007.68RP11-30L4.1'processed_transcript'12AELoss-24.951AB E2_Aa0
1932017.68DPH5'protein_coding'2054AELoss-22.036EU AB ER18c0.00
1942027.67LAMP1'protein_coding'516AELoss-124.133EU AB E4a_E5a0.00
1952037.66ARFGAP3'protein_coding'1228AELoss-25.024EU AB E2_Da0.00
1962047.65RP11-179H18.3'processed_transcript'12AELoss-95.151AB E1_Da0
1972057.63HK1'protein_coding'2460AELoss-24.868EU AB E6_Aa50.00
1982067.62IDH3B'protein_coding'1541AELoss-19.774EU E5c_E5c0.00
1992087.60HNRNPA1'protein_coding'314AEGain31.048EU E2a_E3a57.14
2002097.57GSTM4'protein_coding'1537AELoss-32.414EU ES AB E3a_E7a50.00
2012107.55TOR1AIP2'protein_coding'616AELoss-26.553EU ES AB E4_Aa0.00
2022117.53PLEKHA2'protein_coding'214AELoss-21.042EU ER12b100.00
2032127.52AC130686.3'protein_coding'517AELoss-14.254EU AB ENST000004650970.00
2042137.51MLC1'protein_coding'722AELoss-115.855EU ES AB E7a_E9a0.00
2052147.51SCHIP1'protein_coding'1636AELoss-18.708EU AB ER1b25.00
2062157.50SNRNP25'protein_coding'719AELoss-64.038EU AB E2_Aa60.00
2072167.50GEFT'protein_coding'830AELoss-21.432EU AB E13_Ab0
2082177.49RPS9'protein_coding'1323AELoss-112.717EU ER1h33.33
2092207.45MREG'protein_coding'616AELoss-28.213AB E9_Aa0
2102217.45AC079316.2'lincRNA'12AELoss-16.932AB E2_Aa0
2112227.45ARL6IP5'protein_coding'718AELoss-33.469EU ES AB E5_Ab33.33
2122237.44DCUN1D2'protein_coding'1229AELoss-23.384EU AB CE E10_Db0
2132247.44RINT1'protein_coding'832AELoss-16.389EU ES AB IR E5_Aa100.00
2142257.43MAST2'protein_coding'1568AELoss-24.041AB E7_Da0
2152267.43MCFD2'protein_coding'1733AELoss-23.117EU AB E6_Da0.00
2162277.41PSME2'protein_coding'418AELoss-25.583EU ES AB E5a_E6c0.00
2172287.41AC007390.4'protein_coding'718AELoss-21.704EU AB E7_Ad100.00
2182297.37ZNF90'protein_coding'1467AELoss-16.0444EU ES AB CE E16g_E16h36.36
2192307.37LYRM4'protein_coding'819AELoss-43.034EU AB E3_Da100.00
2202317.37FUS'protein_coding'1236AELoss-63.087EU AB E6a_E7b0.00
2212327.35NGDN'protein_coding'313AELoss-18.032EU E5a_E6a0.00
2222337.33SLC27A1'protein_coding'418AELoss-19.171AB E8_Aa0
2232347.33AC010733.5'processed_transcript'12AELoss-58.242EU AB E2_Aa0
2242357.33HSPD1'protein_coding'1443AELoss-15.9110EU ES AB E5_Db33.33
2252377.33AL121809.2'protein_coding'15AELoss-106.233EU AB E3_Aa0
2262387.31RPS6KA3'protein_coding'839AELoss-13.456EU AB E7_Db75.00
2272397.31AC133555.7'protein_coding'12AELoss-74.313EU AB E1a_E2a0
2282407.31ZFP30'protein_coding'413AELoss-10.445EU AB E6_Ac100.00
2292417.31NDUFB5'protein_coding'1640AELoss-25.5415EU ES AB E7_Aa72.73
2302427.30AC015815.5'pseudogene'12AELoss-24.932EU AB E2_Aa0
2312437.30MFAP4'protein_coding'38DEGain158.002EU MFAP40.00
2322447.29RPS29'protein_coding'24AEGain57.043EU ES E2a_E3a100.00
2332457.29HNRNPC'protein_coding'818AELoss-23.698EU ES AB E2_Da25.00
2342477.28RPS3A'protein_coding'16AEGain72.308EU ES E2a_E3a71.43
2352487.28DHDDS'protein_coding'1630AELoss-20.392EU AB E8_Da0
2362497.27ACTA2'protein_coding'717AELoss-57.842EU AB E4_Db0
2372507.27MATR3'protein_coding'525AEGain25.7110EU ES AB ER4a37.50
2382517.27RAB1B'protein_coding'313AELoss-44.624EU ENST000003149650.00
2392527.26USP4'protein_coding'1448AELoss-16.378EU AB E19_Da25.00
2402537.25TMEM218'protein_coding'27AELoss-18.602AB CE E2_Aa0
2412547.23PSIP1'protein_coding'1134AELoss-56.016EU AB IR E9a_E10a0.00
2422557.21RAB7A'protein_coding'1026AELoss-74.607EU AB E5b_E5c33.33
2432567.21SSB'protein_coding'1333AELoss-23.886EU ES AB E6_Dc33.33
2442577.21PDHA1'protein_coding'1234AELoss-17.256EU ES AB CE E11_Aa33.33
2452587.21MACF1'protein_coding'31160AELoss-65.6025EU ES AB E8_Da18.75
2462597.21ZNF789'protein_coding'1532AELoss-72.213EU AB E7_Da0
2472607.20IPO5'protein_coding'3193AELoss-15.229EU AB E5_Db40.00
2482617.20FRMD6'protein_coding'320AELoss-8.853EU AB E4_Aa0
2492627.19FKBP11'protein_coding'38AELoss-14.381AB E7_Da0
2502637.18XRN1'protein_coding'1473AELoss-17.4612EU ES AB E2_Da20.00
2512647.17TRNAU1AP'protein_coding'1029AELoss-26.085EU AB CE E1_Dd0.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
12211.78RPS25'protein_coding'15AEGain56.785EU E2a_E3a75.00
25510.34RPS10'protein_coding'714AEGain69.816EU ES E4a_E5a40.00
31348.32RPL13A'protein_coding'1235AEGain42.1513EU AB E2c_E2e40.00
41418.21AL035420.2'lincRNA'12AEGain124.462EU AB ER2a0
51727.94BX322613.2'protein_coding'25DEGain246.350N/ABX322613.2N/A
61747.93RPL9'protein_coding'312AEGain23.0611EU AB E3a_E4a50.00
72077.61WISP1'protein_coding'45DEGain195.380N/AWISP1N/A
82087.60HNRNPA1'protein_coding'314AEGain31.048EU E2a_E3a57.14
92437.30MFAP4'protein_coding'38DEGain158.002EU MFAP40.00
102447.29RPS29'protein_coding'24AEGain57.043EU ES E2a_E3a100.00
112477.28RPS3A'protein_coding'16AEGain72.308EU ES E2a_E3a71.43
122507.27MATR3'protein_coding'525AEGain25.7110EU ES AB ER4a37.50
132787.12AE000661.20'IG_C_gene'13DEGain139.480N/AAE000661.20N/A
142797.12RPL37A'protein_coding'819AEGain12.447EU AB E1c_E1j40.00
152817.11RPL37'protein_coding'28AEGain19.445EU ER3a50.00
163386.85SRP9'protein_coding'410AEGain22.015EU ES E1a_E2a50.00
173606.75RPS27A'protein_coding'1129AEGain22.4111EU AB ER3i22.22
183916.59EPB41L2'protein_coding'1132AEGain8.247EU ES E13a_E15a83.33
194076.49AGTR1'protein_coding'1020DEGain90.120N/AAGTR1N/A
204106.48CNPY2'protein_coding'16AEGain16.181I3_SR40
214196.41VGF'protein_coding'37DEGain34.882EU VGF100.00
224326.31CLDND1'protein_coding'710AEGain4.765EU ES E1a_E4a75.00
234406.29SLC6A15'protein_coding'416DEGain78.090N/ASLC6A15N/A
244646.16MTSS1L'protein_coding'217AEGain14.545EU ES ER15c50.00
254866.07ANLN'protein_coding'1350AEGain11.2311EU ES AB ER4a44.44
264926.05RPS14'protein_coding'38AEGain10.022EU E2a_E3a0.00
274966.03COX8A'protein_coding'12AEGain10.961EU E1a_E2a0
285105.98AC118282.2'protein_coding'24DEGain63.080N/AAC118282.2N/A
295305.92AC104051.1'lincRNA'12DEGain60.650N/AAC104051.1N/A
305555.83CADM1'protein_coding'314AEGain13.184EU ES E7a_E9a33.33
315565.83DLGAP1'protein_coding'1128AEGain9.007EU ES AB ER3d60.00
325615.82CPNE1'protein_coding'3682AEGain13.7115EU AB IR CE I16_AR20.00
335695.80AC002480.6'protein_coding'35AEGain13.804AB E1_Da0
345735.79SF3B2'protein_coding'226AEGain7.755EU ER2a75.00
356085.68AC118282.5'protein_coding'23DEGain51.220N/AAC118282.5N/A
366115.67RP11-367G6.1'pseudogene'24DEGain51.060N/ARP11-367G6.1N/A
376295.64NOMO1'protein_coding'234AEGain10.295EU AB E31_Ab0.00
386315.63SCAMP5'protein_coding'28AEGain5.192EU ES E3a_E5a0.00
396385.59HOXC8'protein_coding'12DEGain48.290N/AHOXC8N/A
406575.55CD68'protein_coding'210AEGain2.594EU AB CE E4_Aa0
416585.55TUBA1B'protein_coding'26AEGain23.343EU AB E4_Da0.00
426645.54NAP1L4'protein_coding'1137AEGain8.616EU ES AB CE I12_AR150.00
436725.52ZNF397OS'protein_coding'418AEGain9.277EU AB CE ER12a0.00
446925.47INCA1'protein_coding'29AEGain12.241CE I7_AR10
457135.44ATP5I'protein_coding'14AEGain7.694EU E2a_E3a33.33
467325.40SNAP25'protein_coding'514AEGain5.866EU ES AB E4a_E10a25.00
477495.35COL5A2'protein_coding'459DEGain40.790N/ACOL5A2N/A
487645.31RPL27A'protein_coding'15AEGain8.985EU AB E3_Aa66.67
497895.26RPL27'protein_coding'15AEGain5.734EU ER5a66.67
508055.22RPS2'protein_coding'17AEGain8.793EU E2a_E3a50.00
518105.20SGPL1'protein_coding'722AEGain3.582EU ER1a100.00
528115.20BZRAP1'protein_coding'332AEGain3.604EU AB E19_Da0.00
538135.20SPRY1'protein_coding'24DEGain36.660N/ASPRY1N/A
548145.19MED12'protein_coding'1274AEGain7.095EU AB ER42b33.33
558175.19SDR39U1'protein_coding'39AEGain5.656EU AB E5a_E6a100.00
568195.19AC104438.1'pseudogene'12AEGain6.731EU ER1a0
578215.19C9orf25'protein_coding'1425AEGain3.722CE I1_AR80
588315.17DHRS4'protein_coding'716AEGain8.002EU CE I1_AR20
598425.15C16orf62'protein_coding'437AEGain4.862ES I31_SR30
608535.13EGR1'protein_coding'25DEGain35.063AB IR EGR10
618605.12ARHGEF6'protein_coding'324AEGain5.515EU ES E17a_E20a75.00
628645.11MAP4'protein_coding'2365AEGain8.037EU ES AB E10_Dd40.00
638785.08COX7C'protein_coding'13AEGain9.753EU E1a_E2a50.00
648825.06YJEFN3'protein_coding'722AEGain8.466EU AB E2a_E3a50.00
658945.05TRIM44'protein_coding'15AEGain5.5523EU AB IR CE I4_AR20
669344.97PEX5'protein_coding'725AEGain8.052EU CE I11_AR10
679354.97ITM2C'protein_coding'719AEGain3.182EU ES ENST000003350050.00
689384.97AC119751.8'protein_coding'24DEGain31.250N/AAC119751.8N/A
699444.96DUSP4'protein_coding'514DEGain31.120N/ADUSP4N/A
709514.95SEZ6L'protein_coding'1131AEGain8.587EU ES AB ENST0000034370660.00
719574.94NRCAM'protein_coding'2071AEGain7.9114EU ES AB IR ER42a50.00
729594.94TMPRSS5'protein_coding'113AEGain6.864EU CE I8_AR20.00
739644.93APH1A'protein_coding'1125AEGain14.654EU ER2c100.00
749684.93IGF2BP2'protein_coding'1137DEGain30.410N/AIGF2BP2N/A
759724.92FRAS1'protein_coding'584DEGain30.250N/AFRAS1N/A
7610004.87FUBP1'protein_coding'1746AEGain8.7328EU ES AB IR I527.27
7710084.85NPEPPS'protein_coding'123AEGain7.973EU AB CE I9_AR100
7810104.84FREM2'protein_coding'327DEGain28.740N/AFREM2N/A
7910124.84RP11-263K19.2'processed_transcript'619AEGain3.0212EU AB IR E8_Aa50.00
8010254.80AC094107.1'lincRNA'12AEGain7.052CE I1_AR20
8110294.79AC090519.7'pseudogene'13AEGain4.863EU AB ER3a0.00
8210314.79HSDL2'protein_coding'720AEGain6.232ES AB E4a_E8a0
8310334.79DLEU2'processed_transcript'823AEGain33.506EU AB IR I7_SR10
8410364.79TAF1A'protein_coding'925AEGain6.574EU AB ER1e100.00
8510374.78STYXL1'protein_coding'1635AEGain7.149EU AB ER10a66.67
8610404.78ATP5J2'protein_coding'1021AEGain9.019EU ES AB E2a_E3a42.86
8710424.78SPCS2'protein_coding'15AEGain13.923EU E3a_E4a50.00
8810514.76SPAG9'protein_coding'537AEGain4.838EU CE I18_AR280.00
8910544.76LL22NC03-80A10.2'protein_coding'418AEGain8.117EU AB CE E8_Da33.33
9010604.75PAX2'protein_coding'822DEGain26.890N/APAX2N/A
9110634.74TERF1'protein_coding'312AEGain5.075EU AB ER1c33.33
9210664.74NT5C2'protein_coding'1641AEGain7.844EU AB CE I16_AR10
9310694.74AC112777.1'rRNA_pseudogene'11DEGain26.700N/AAC112777.1N/A
9410704.74NBPF14'protein_coding'1027AEGain8.277EU ER5a16.67
9510724.74UBE2L3'protein_coding'48AEGain7.882EU ES E3a_E6a0.00
9610744.73AC010761.4'pseudogene'12AEGain3.881EU ER2a0
9710784.72U47924.1'protein_coding'113AEGain7.3211EU AB IR CE I1_AR10.00
9810794.72SPG11'protein_coding'242AEGain5.7410EU AB CE I39_AR20.00
9910864.72C12orf53'protein_coding'28AEGain10.675EU E1a_E2a75.00
10010894.71TOMM7'protein_coding'714AEGain8.062EU ES E1a_E3b0.00
10110964.70C7orf28A'protein_coding'625AEGain8.428EU ER12c28.57
10211004.70JAM2'protein_coding'1123AEGain3.905EU E9b_E10c50.00
10311054.69RAB18'protein_coding'826AEGain7.386EU ES AB ER10a75.00
10411194.68CYP4V2'protein_coding'213AEGain6.402AB CE I7_AR30
10511234.67PAAF1'protein_coding'213AEGain13.835EU ES AB IR I2100.00
10611304.67AP4M1'protein_coding'1949AEGain13.832EU ER4a0.00
10711434.65WASF2'protein_coding'19AEGain7.902EU E1a_E2a0.00
10811444.65SHOX2'protein_coding'720DEGain25.190N/ASHOX2N/A
10911494.65ZFP36L1'protein_coding'37AEGain8.421EU E1a_E2a0
11011554.64DOCK1'protein_coding'662AEGain2.7410EU ES E1a_E2a0.00
11111604.63TMEM116'protein_coding'315AEGain10.573EU ES ER2a100.00
11211634.63TACC1'protein_coding'926AEGain7.395EU AB E17b_E17c50.00
11311654.63BAALC'protein_coding'68AEGain5.782EU ES E1a_E4a0.00
11411664.63AC100786.1'protein_coding'26AEGain22.592EU E3a_E4a0.00
11511674.63SERPINH1'protein_coding'28DEGain24.711EU SERPINH10
11611684.63SNX17'protein_coding'934AEGain4.339EU AB E1a_E2a83.33
11711704.62PRSS12'protein_coding'113DEGain24.660N/APRSS12N/A
11811744.62CDH6'protein_coding'112DEGain24.641EU CDH60
11911764.62UBTF'protein_coding'424AEGain6.271AB E3_Aa0
12011834.61BAG1'protein_coding'1230AEGain3.487EU AB ENST0000037970775.00
12112054.58HNMT'protein_coding'924AEGain4.485EU ES AB E3a_E5a50.00
12212134.56HSPA9'protein_coding'117AEGain15.702EU E1a_E2a100.00
12312164.56AC009022.2'protein_coding'218AEGain7.974EU E16a_E17a0.00
12412334.54RPS8'protein_coding'818AEGain12.425EU AB E3_Da0.00
12512404.53FAM63A'protein_coding'727AEGain3.826EU ES AB ER3a100.00
12612604.50SACS'protein_coding'920DEGain22.6415EU ES AB SACS54.55
12712644.50ZIC3'protein_coding'37DEGain22.560N/AZIC3N/A
12812694.49ATXN2'protein_coding'1651AEGain11.867EU ES AB E10a_E12a75.00
12912714.49TP53BP1'protein_coding'1554AEGain5.713EU AB I9_SR20
13012724.49URG4'protein_coding'1633AEGain5.225EU CE I8_AR1100.00
13112794.48HOXC10'protein_coding'12DEGain22.380N/AHOXC10N/A
13212814.48DUSP'protein_coding'310DEGain22.360N/ADUSPN/A
13313024.46TCEAL3'protein_coding'413AEGain5.002EU ER4c0.00
13413044.45NSL1'protein_coding'816AEGain6.945EU AB E1_Ac0.00
13513054.45MPDZ'protein_coding'1163AEGain4.472EU AB E47_Aa0
13613064.45STX1B'protein_coding'110AEGain3.201CE I9_AR10
13713134.44TEK'protein_coding'429DEGain21.750N/ATEKN/A
13813224.43GAS2L3'protein_coding'18DEGain21.620N/AGAS2L3N/A
13913284.43ROMO1'protein_coding'612AEGain22.826EU AB E1d_E2b50.00
14013324.43INPP5K'protein_coding'1539AEGain4.1611EU AB ER2a75.00
14113404.41FAF1'protein_coding'631AEGain5.294EU CE I9_AR2100.00
14213434.41ATP5C1'protein_coding'1128AEGain13.665EU ES E10a_E13a25.00
14313464.40PPIC'protein_coding'27DEGain21.170N/APPICN/A
14413514.40ASAH1'protein_coding'420AEGain6.194EU ES E7a_E9a33.33
14513524.40CCDC94'protein_coding'18AEGain5.482EU E2a_E3a0.00
14613564.40VPS53'protein_coding'528AEGain6.408EU AB CE I19_AR80.00
14713594.39AC106045.2'pseudogene'14AEGain6.593EU AB ER2a0.00
14813634.39PSMC1'protein_coding'111AEGain6.696EU AB E3a_E4a50.00
14913774.37COX6C'protein_coding'14AEGain16.683EU E2a_E3a50.00
15013784.37ACTG1'protein_coding'16AEGain5.141EU E2a_E3a0
15113864.36RPL35'protein_coding'513AEGain5.473EU ES E1b_E2a0.00
15213964.35MRPL18'protein_coding'410AEGain5.342ES AB E2a_E3a0
15313974.35KIAA0652'protein_coding'623AEGain2.255EU ES AB E8_Da66.67
15413994.35JPH4'protein_coding'311AEGain15.532EU ER7b0.00
15514014.35HADHB'protein_coding'727AEGain5.277EU ES CE E4a_E6a66.67
15614074.34PMP2'protein_coding'14AEGain6.041EU E1a_E2a0
15714094.34PSMD1'protein_coding'1249AEGain5.346EU AB E2a_E3a50.00
15814114.33TPM2'protein_coding'723AEGain3.402EU ES E6b_E8b100.00
15914174.32LGALS3BP'protein_coding'312AEGain2.972EU E2a_E3a100.00
16014274.31RIOK3'protein_coding'316AEGain5.631I8_SR20
16114454.30MRPL33'protein_coding'819AEGain5.683EU ES E5a_E7b50.00
16214494.29PTPRF'protein_coding'2369AEGain6.008EU ES AB CE I16_AR240.00
16314624.28AC008763.1'protein_coding'15AEGain6.823EU E2a_E3a0.00
16414674.27RPS7'protein_coding'922AEGain6.4210EU AB E2e_E2f50.00
16514704.26GABBR1'protein_coding'2467AEGain2.1613EU ES AB IR E18_Db16.67
16614714.26MAT2A'protein_coding'1439AEGain2.073EU ER1i50.00
16714724.26BTBD3'protein_coding'1633DEGain10.6110EU ES AB BTBD3100.00
16814734.26BCAP29'protein_coding'1842AEGain5.978EU ES AB ER3a25.00
16914754.26LSM7'protein_coding'14AEGain4.322EU ER3a100.00
17014894.25TMSB10'protein_coding'13AEGain4.842EU E2a_E3a0.00
17114934.24GTF2A1'protein_coding'411AEGain11.103EU E10a_E11a100.00
17215024.23ANKRD28'protein_coding'1758AEGain4.857EU CE I11_SR30.00
17315094.22MT2A'protein_coding'13AEGain3.661EU E2a_E3a0
17415244.21PGRMC2'protein_coding'37AEGain5.212EU ER1c100.00
17515254.20RP1-21O18.1'protein_coding'1030AEGain2.7626EU AB IR CE E10_Db78.57
17615284.20DUSP6'protein_coding'23DEGain18.380N/ADUSP6N/A
17715354.19NAPB'protein_coding'719AEGain4.903EU AB E1a_E2a100.00
17815364.19GRIPAP1'protein_coding'939AEGain3.859EU AB E3a_E4a75.00
17915374.19E2F7'protein_coding'315DEGain18.280N/AE2F7N/A
18015394.19EXT2'protein_coding'318AEGain6.351ES E1a_E3b0
18115404.19STAG3'protein_coding'2585AEGain5.0665EU AB IR E9b_E10a28.57
18215414.19HOXC9'protein_coding'12DEGain18.220N/AHOXC9N/A
18315424.18ABCB8'protein_coding'2360AEGain5.159EU AB I11_SR20.00
18415434.18TTC35'protein_coding'111AEGain5.605EU CE I10_AR266.67
18515554.17SCYL1'protein_coding'525AEGain4.227EU AB E1a_E2a75.00
18615594.17LMTK3'protein_coding'116AEGain6.792EU AB E3_Aa0
18715624.16PPP3CA'protein_coding'420AEGain3.755EU ES CE E14a_E16a100.00
18815704.16ALKBH1'protein_coding'16AEGain4.671EU E1a_E2a0
18915714.15DCTN1'protein_coding'3092AEGain4.302EU ES ER35g0.00
19015754.15NDUFV2'protein_coding'721AEGain6.6422EU AB IR E2_Da37.50
19115834.14USP40'protein_coding'1864AEGain6.1711EU ES AB ER29a60.00
19215874.13NDUFB7'protein_coding'13AEGain4.772EU E1a_E2a0.00
19315914.13HLA-E'protein_coding'618AEGain2.504EU AB E1_Db100.00
19415934.13SESN3'protein_coding'312DEGain17.530N/ASESN3N/A
19515944.13ATP5H'protein_coding'26AEGain19.952EU E2a_E3a0.00
19615974.13MAP3K1'protein_coding'222DEGain17.502EU MAP3K10.00
19716004.12TMEM43'protein_coding'525AEGain5.224EU ES AB CE E4_Aa100.00
19816094.12MAPK8'protein_coding'1645AEGain3.736EU AB CE ER5b100.00
19916134.11ZIC1'protein_coding'614DEGain17.280N/AZIC1N/A
20016164.11AC027763.1'processed_transcript'13AEGain2.742EU AB E2_Aa0
20116174.11AGTRAP'protein_coding'1129AEGain3.967EU ES E3a_E4a66.67
20216194.10CHL1'protein_coding'1657AEGain5.0611EU ES AB E12b_E14a33.33
20316244.10C18orf56'protein_coding'12AEGain4.641AB E1_Da0
20416264.10SOX2OT'processed_transcript'1741AEGain3.9918EU ES AB ER8b50.00
20516344.09PI4KA'protein_coding'2195AEGain12.549EU ES AB ER52d20.00
20616424.08SGK493'protein_coding'1028DEGain16.933EU ES AB SGK493100.00
20716434.08KIAA0368'protein_coding'560AEGain5.6514EU AB IR I310.00
20816444.08HOXC4'protein_coding'26DEGain16.920N/AHOXC4N/A
20916534.07RPS18'protein_coding'819AEGain4.358EU AB E3_Ad50.00
21016604.07RGS16'protein_coding'15DEGain16.780N/ARGS16N/A
21116644.06ARHGAP20'protein_coding'319DEGain16.730N/AARHGAP20N/A
21216654.06SRR'protein_coding'18AEGain5.6814AB IR E3_Da0
21316674.06UQCRQ'protein_coding'715AEGain4.925EU E1d_E1i25.00
21416804.05AC010619.2'protein_coding'15AEGain4.573EU E4a_E5a0.00
21516814.05GCDH'protein_coding'515AEGain5.677EU AB ER3a60.00
21616834.05CDC2'protein_coding'919DEGain16.534EU AB CDC20.00
21716874.05HOXC6'protein_coding'34DEGain16.520N/AHOXC6N/A
21816944.04RBX1'protein_coding'39AEGain4.612EU ER2a0.00
21916984.04UCRC'protein_coding'410AEGain11.059EU ES AB ER1g50.00
22017044.03CHMP4A'protein_coding'212AEGain10.815EU AB IR I5_AR30
22117094.02SNORA79'snoRNA'11DEGain16.280N/ASNORA79N/A
22217104.02PSMB10'protein_coding'211AEGain3.254EU AB E3_Db0.00
22317114.02GPD2'protein_coding'1239AEGain5.264EU AB CE I21_AR60.00
22417214.01METTL7B'protein_coding'23DEGain16.160N/AMETTL7BN/A
22517254.01NDUFB3'protein_coding'410AEGain4.483EU AB E4a_E5a0.00
22617364.00CIZ1'protein_coding'3084AEGain4.7412EU AB ER4e71.43
22717424.00KIAA0101'protein_coding'26DEGain9.172EU KIAA0101100.00
22817453.99ACSL1'protein_coding'424AEGain3.372EU CE I10_AR40
22917493.99RAB8B'protein_coding'211AEGain5.655EU ER2a25.00
23017503.99CIRBP'protein_coding'412AEGain4.744EU E2a_E3a66.67
23117513.99CRBN'protein_coding'1436AEGain4.673EU E2a_E3a50.00
23217523.99CPNE4'protein_coding'323DEGain15.870N/ACPNE4N/A
23317533.99TUT1'protein_coding'1241AEGain9.473EU E9d_E10a0.00
23417543.99TARSL2'protein_coding'223AEGain4.863EU CE I15_AR30.00
23517553.99QRSL1'protein_coding'316AEGain4.075EU CE I5_AR233.33
23617583.99MAST1'protein_coding'126AEGain6.211I6_SR10
23717603.98AL353658.1'protein_coding'12DEGain15.810N/AAL353658.1N/A
23817633.98FAM92A1'protein_coding'512AEGain16.195EU AB CE I7_AR80
23917653.98C20orf111'protein_coding'27AEGain9.424EU CE ER3a50.00
24017683.98SNORD1C'protein_coding'25AEGain4.861EU E1b_E2a0
24117713.97NPNT'protein_coding'414DEGain15.712EU NPNT0.00
24217723.97HMGA2'protein_coding'510DEGain15.690N/AHMGA2N/A
24317763.96PSMB5'protein_coding'511AEGain14.222EU AB E1_Ac0
24417803.96GALC'protein_coding'624AEGain3.682EU E1b_E2a0.00
24517813.96LHFPL3'protein_coding'38AEGain9.742EU ES ENST000004019700.00
24617833.96NDUFV3'protein_coding'719AEGain8.7613EU AB CE E5a_E6a40.00
24717853.96HOMER1'protein_coding'313DEGain15.531AB HOMER10
24817873.95TAGLN'protein_coding'410AEGain3.874EU AB E1_Ab100.00
24917903.95GDAP1'protein_coding'28AEGain3.121AB E2_Ab0
25017953.95CENPF'protein_coding'629DEGain15.410N/ACENPFN/A
25117983.94PTX3'protein_coding'13DEGain15.370N/APTX3N/A


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.22AP000692.1'processed_transcript'12AELoss-703.443EU AB E1a_E2a0
2214.49AASS'protein_coding'739AELoss-323.582AB E24_Dc0
3314.04AC128648.1'protein_coding'18AELoss-664.725EU AB E2a_E3a100.00
4413.81AC133435.2'lincRNA'12AELoss-2214.953EU AB E1a_E2a0
5513.60MSH5'protein_coding'2878AELoss-361.9519EU ES AB CE E15a_E16a42.86
6613.33RP1-12G14.4'pseudogene'22AELoss-2227.282AB E1_Ab0
7713.25C19orf29'protein_coding'422AELoss-281.2012EU AB E4_Aa60.00
8813.17GTPBP5'protein_coding'1330AELoss-376.8514EU AB E3_Db40.00
9913.15AC007216.1'pseudogene'13AELoss-297.585EU AB E2a_E3a0.00
101013.10ST3GAL5'protein_coding'1535AELoss-190.587EU AB E17_Aa66.67
111112.93FAM116A'protein_coding'938AELoss-242.412AB E21_Ab0
121212.88AIFM1'protein_coding'624AELoss-224.013EU ES AB E11_Aa0.00
131312.78LIMK1'protein_coding'931AELoss-109.485EU ES AB E16_Aa50.00
141412.76AC138409.3'protein_coding'28AELoss-95.997EU AB E5a_E6a50.00
151512.71FARP1'protein_coding'839AELoss-261.1911EU ES AB IR CE E20_Aa0.00
161612.55FAM73A'protein_coding'422AELoss-142.527EU AB E10f_E11a50.00
171712.34ZNF283'protein_coding'942AELoss-184.6113EU AB CE E17_Db33.33
181812.31CHCHD2'protein_coding'26AELoss-129.804EU AB E1_Ab100.00
191911.97DHX34'protein_coding'633AELoss-197.301AB E15_Aa0
202011.91ELK4'protein_coding'38AELoss-135.691AB E2_Da0
212111.89MORC2'protein_coding'638AELoss-106.455EU ES AB E2_Da50.00
222311.77MRPS18B'protein_coding'513AELoss-99.165EU AB E2_Dd33.33
232411.72CYB561D1'protein_coding'815AELoss-222.512AB E2_Db0
242511.70MLL3'protein_coding'1899AELoss-189.2814EU AB CE E62a_E63a20.00
252611.64SLC25A17'protein_coding'1644AELoss-120.904EU AB E3_Da0
262711.60PANK1'protein_coding'720AELoss-105.521AB E4_Da0
272811.53ARMC10'protein_coding'1024AELoss-94.9410EU ES AB CE E9_Aa50.00
282911.53C21orf58'protein_coding'1331AELoss-113.612AB E9_Dd0
293011.48AC005197.3'protein_coding'12AELoss-130.922AB E1_Da0
303111.44ZNF684'protein_coding'614AELoss-132.583AB E5_Ab0
313211.37NUDT1'protein_coding'1320AELoss-51.193EU AB E4_Da0.00
323311.29MAP2K2'protein_coding'826AELoss-130.544EU AB E7a_E7c50.00
333411.24C7orf46'protein_coding'821AELoss-154.014EU ES AB E3_Da0.00
343511.18C7orf44'protein_coding'2047AELoss-143.2411EU ES AB CE E11_Df20.00
353611.15AC034193.2'lincRNA'12AELoss-107.651AB E1_Da0
363711.15PTPRZ1'protein_coding'1255AELoss-100.5830EU ES AB E16_Ad73.08
373811.10RWDD2B'protein_coding'718AELoss-97.695EU AB E2_Da50.00
383911.05DOCK4'protein_coding'2187AELoss-120.303EU AB E51_Aa0
394010.99TOP2A'protein_coding'557AELoss-43.2213EU AB E19_Da22.22
404110.95OGT'protein_coding'1246AELoss-83.528EU ES AB E4_Da0.00
414210.92CROCCL1'processed_transcript'420AELoss-97.115ES AB CE E11_Db0
424310.91SLC25A15'protein_coding'720AELoss-112.452AB E9_Aa0
434410.84RANBP2'protein_coding'1149AELoss-125.224EU AB E13_Dc0.00
444510.76DHTKD1'protein_coding'627AELoss-117.813EU AB E16_Db0
454610.74CHN2'protein_coding'2664AELoss-77.4511EU AB E7_Aa0.00
464710.72AKT2'protein_coding'2672AELoss-70.2510EU ES AB E9_Aa0.00
474810.60C10orf18'protein_coding'1239AELoss-72.4622EU AB E23_Db52.94
484910.60PHACTR4'protein_coding'729AELoss-117.869EU ES AB E19_Dc33.33
495010.51PHC3'protein_coding'2459AELoss-81.0410EU AB E6_Da33.33
505110.42MKRN1'protein_coding'1644AELoss-51.636EU ES AB E9_Aa100.00
515210.41NMNAT1'protein_coding'615AELoss-44.8810EU ES AB ENST0000046268650.00
525310.37AC012170.2'lincRNA'15AELoss-59.4411EU AB IR E3a_E4a100.00
535410.37AC087742.1'lincRNA'16AELoss-127.117EU AB E1a_E2a100.00
545610.30AC007620.1'processed_transcript'12AELoss-52.411AB E1_Da0
555710.24SNORA72'lincRNA'12AELoss-89.621AB E1_Da0
565810.02PQLC2'protein_coding'923AELoss-102.577EU AB E10_Aa50.00
575910.01KIAA1704'protein_coding'824AELoss-62.777EU ES AB E13_Aa0.00
58609.99CTC-398G3.2'pseudogene'24AELoss-41.822AB E1_Ab0
59619.98FIS1'protein_coding'919AELoss-466.425EU ES AB E5_Aa33.33
60629.98CDC16'protein_coding'1237AELoss-39.316EU AB E18_Aa50.00
61639.96MMADHC'protein_coding'621AELoss-85.805EU ES AB E8_Da50.00
62649.92PRPF3'protein_coding'829AELoss-332.502AB E14_Aa0
63659.87NHP2L1'protein_coding'1022AELoss-41.214EU AB E8_Dc100.00
64669.70ZNF730'protein_coding'15AELoss-66.271AB E5_Aa0
65679.66PHYH'protein_coding'924AELoss-15.183EU AB E5_Db100.00
66689.63SLC2A11'protein_coding'3070AELoss-76.6210AB E13_Df0
67699.61NDUFS2'protein_coding'1545AELoss-40.866EU ES AB E13_Aa50.00
68709.59TRIM33'protein_coding'727AELoss-72.446EU AB CE E16_Db0.00
69719.55AC009065.2'lincRNA'12AELoss-76.965EU AB IR E1a_E2a0
70729.53AC121253.1'protein_coding'46AELoss-64.694EU AB E1_Dd0
71739.42CD46'protein_coding'2736AELoss-33.806EU AB E5_Ae33.33
72749.40AC093616.1'processed_transcript'12AELoss-76.292AB E1_Da0
73759.36MED24'protein_coding'1350AELoss-75.4111EU AB E2_Aa50.00
74769.33AL136180.1'protein_coding'12AELoss-59.741AB E2_Aa0
75779.30THOC7'protein_coding'822AELoss-34.164EU AB E2_Aa100.00
76789.29KLHDC8A'protein_coding'414AELoss-11.615EU AB E9_Da33.33
77799.25C1orf151'protein_coding'1128AELoss-47.9811EU AB IR E3_Aa0.00
78809.22DHX40'protein_coding'325AELoss-55.433EU AB E10_Aa0
79819.22EIF2B3'protein_coding'1131AELoss-49.257EU AB E8_Db0
80829.20EEF1A1'protein_coding'1131AELoss-304.1816EU AB ER6a27.27
81839.19SON'protein_coding'2558AELoss-48.928EU AB E3_Da25.00
82849.16ING4'protein_coding'2346AELoss-204.484EU AB E4_Aa50.00
83859.15PDHB'protein_coding'1034AELoss-53.6410EU AB E1_Dg42.86
84869.15TAF13'protein_coding'27AELoss-49.263EU AB E5_Aa0
85879.11CNOT10'protein_coding'1952AELoss-166.5718EU ES AB E21_Ab42.86
86889.11ATL2'protein_coding'1744AELoss-34.659EU AB E4_Da0.00
87899.10GS1-174L6.1'processed_transcript'12AELoss-55.792EU AB E1a_E2a0
88909.08SEPT2'protein_coding'47102AELoss-310.522EU AB E12_Da0
89919.06TMEM111'protein_coding'517AELoss-63.583AB E2_Aa0
90929.06RABGEF1'protein_coding'1028AELoss-43.438EU ES AB CE E9a_E10a0.00
91939.05MLLT6'protein_coding'1038AELoss-240.103EU AB E13_Db0
92949.04TMEM104'protein_coding'213AELoss-61.574EU ES AB CE E3_Da100.00
93959.04RPL7A'protein_coding'1127AELoss-237.818EU AB E2_Ab33.33
94968.98HMGB1'protein_coding'1227AELoss-172.2612EU ES AB E6b_E7b40.00
95978.97TRAPPC2'protein_coding'819AELoss-62.443EU AB E5a_E5b0
96988.95RNF121'protein_coding'418AELoss-29.061AB E4_Aa0
97998.94IDE'protein_coding'844AELoss-29.215EU AB E5_Da0
981008.89AC004447.1'lincRNA'12AELoss-57.092EU AB E1a_E2a0
991018.82PARP1'protein_coding'1042AELoss-57.797EU AB ER24c33.33
1001028.81ANO10'protein_coding'1952AELoss-51.676EU AB E4_Ab0.00
1011038.80GFAP'protein_coding'411DELoss-445.010N/AGFAPN/A
1021048.79AC004086.1'protein_coding'28AELoss-55.616EU E2a_E3a40.00
1031058.74PPIL2'protein_coding'1658AELoss-16.9325EU ES AB IR E8_Da33.33
1041068.74AC133555.1'protein_coding'14AELoss-167.063EU AB E3a_E4a0
1051078.73CXorf57'protein_coding'726AELoss-44.693AB E9_Aa0
1061088.72BMS1P1'pseudogene'316AELoss-76.254EU AB E9_Aa100.00
1071098.70PKD1'protein_coding'26115AELoss-147.5422EU ES AB E28_Db9.09
1081108.70NRSN2'protein_coding'514AELoss-32.352AB E6_Db0
1091118.70ARIH2'protein_coding'3576AELoss-48.7523EU ES AB E5_Dd41.67
1101128.66ETV5'protein_coding'1439AELoss-31.225EU ES AB E8_Db0.00
1111138.65POLR2B'protein_coding'1347AELoss-43.0114EU AB IR E3_Ab20.00
1121148.61KDELC2'protein_coding'311AELoss-24.212AB E7_Da0
1131158.58AC073940.1'pseudogene'12AELoss-121.743EU AB E2_Aa0
1141168.58C4orf36'protein_coding'313AELoss-52.543AB E9_Dc0
1151178.55AGRN'protein_coding'1054AELoss-39.216EU ES AB E25_Aa33.33
1161188.55RPS27'protein_coding'410AELoss-40.344EU E2b_E3a0.00
1171198.55AC026271.1'processed_transcript'210AELoss-39.151AB E8_Aa0
1181208.54RAB3GAP2'protein_coding'1155AELoss-24.485EU AB CE E37_Aa0
1191218.49CC2D1A'protein_coding'535AELoss-27.753AB E24_Aa0
1201228.47HMGN1'protein_coding'2146AELoss-36.8913EU AB ER5j25.00
1211238.45FAM107A'protein_coding'919DELoss-349.240N/AFAM107AN/A
1221248.44P4HB'protein_coding'1541AELoss-27.736EU AB E8a_E8c0
1231258.43RETSAT'protein_coding'1030AELoss-48.914AB E6_Da0
1241268.43ZNF3'protein_coding'1639AELoss-45.6312EU AB E4_Dc28.57
1251278.42MDM2'protein_coding'2236AELoss-19.173EU AB ER14c100.00
1261288.41GSDMB'protein_coding'1428AELoss-34.099EU AB CE E2_Ad66.67
1271298.40SEPT7'protein_coding'1433AELoss-40.858EU ES AB CE E1b_E5a40.00
1281308.39EIF4G3'protein_coding'1663AELoss-39.1911EU ES AB CE E4_Aa20.00
1291318.38AL354696.3'lincRNA'12AELoss-109.962AB E1_Da0
1301328.36HBEGF'protein_coding'310AELoss-132.542EU AB E5_Aa0
1311338.36AMT'protein_coding'2554AELoss-29.688EU AB E2_Aa66.67
1321358.29HLA-B'protein_coding'1029AELoss-235.9310EU AB E1f_E1o0.00
1331368.29HEATR3'protein_coding'620AELoss-33.593EU AB E13_Ab0.00
1341378.26H6PD'protein_coding'27AELoss-139.513EU AB E5_Ac0
1351388.26AP000662.1'lincRNA'12AELoss-43.163EU AB E1_Da0
1361398.25MAP3K7IP2'protein_coding'619AELoss-142.133EU AB E5_Aa0
1371408.24AFG3L1'processed_transcript'1841AELoss-107.224EU AB E2_Dc0.00
1381428.21AP002770.2'lincRNA'13AELoss-29.982AB E2_Da0
1391438.21ACSS2'protein_coding'2770AELoss-34.9215EU AB IR CE E9_Aa25.00
1401448.21WDR32'protein_coding'514AELoss-35.476EU AB E8_Db33.33
1411458.20AKR1B1'protein_coding'1641AELoss-116.615EU AB E5_Ab0.00
1421468.20COPS7B'protein_coding'2247AELoss-50.476EU AB IR E4_Ae100.00
1431478.17AC013283.2'lincRNA'12AELoss-34.961AB E1_Da0
1441488.15IDH1'protein_coding'1338AELoss-31.714EU ES AB E2_Aa50.00
1451498.14MBP'protein_coding'2860DELoss-282.810N/AMBPN/A
1461508.13AC138951.4'pseudogene'12AELoss-44.103EU AB E2_Aa100.00
1471518.12AL671710.1'lincRNA'15AELoss-21.103EU ES E1a_E5a100.00
1481528.10CD74'protein_coding'310DELoss-275.310N/ACD74N/A
1491538.10C9orf80'protein_coding'720AELoss-105.477EU AB E3_Db0.00
1501548.10POLR2H'protein_coding'1433AELoss-31.686EU AB E6_Aa0.00
1511558.10EIF4B'protein_coding'520AELoss-21.198EU AB E14a_E15a40.00
1521568.10ABHD14A'protein_coding'1140AELoss-152.862AB E5_Ab0
1531578.08CRTC2'protein_coding'933AELoss-118.524EU ES AB E8_Aa0.00
1541588.07AC018633.1'pseudogene'226AELoss-32.097EU AB E18_Aa0.00
1551598.04CCNL2'protein_coding'2158AELoss-21.684EU AB E9_Da0
1561608.03MTRF1'protein_coding'1133AELoss-31.475EU ES AB E6_Da50.00
1571618.02POLM'protein_coding'2049AELoss-29.433EU AB E6_Ab0.00
1581628.02SEC63'protein_coding'1244AELoss-39.419EU ES AB E11_Aa0.00
1591638.00MSH6'protein_coding'822AELoss-27.773ES AB E5_Da0
1601648.00MGST3'protein_coding'1431AELoss-39.3310EU ES AB CE E1_Ag25.00
1611657.99DHCR24'protein_coding'212AELoss-26.442EU AB E6a_E7a0
1621667.98VCAN'protein_coding'518AELoss-93.7611EU AB IR E13a_E14a0
1631677.98ZNRF3'protein_coding'416AELoss-37.883AB E5_Aa0
1641687.97STRBP'protein_coding'1042AELoss-91.143EU AB E2_Aa0
1651697.96NOP14'protein_coding'323AELoss-31.784AB IR CE E19_Aa0
1661707.95AC010323.2'lincRNA'12AELoss-99.213EU AB E1a_E2a0
1671717.95SFRS18'protein_coding'1032AELoss-93.809EU AB E3_Dc0.00
1681737.94FTSJ2'protein_coding'614AELoss-35.771AB E5_Da0
1691757.92DBR1'protein_coding'414AELoss-38.382EU AB E4_Da0
1701767.90ZNF791'protein_coding'410AELoss-19.661AB E5_Dd0
1711777.90DLL3'protein_coding'210AELoss-209.042EU E4a_E5a0.00
1721787.89ALG3'protein_coding'1638AELoss-26.865EU AB E5_Df50.00
1731797.89GFPT1'protein_coding'530AELoss-21.691AB E3_Da0
1741807.88AL691432.1'lincRNA'14AELoss-88.604EU AB E3_Aa0
1751817.87AC145132.1'pseudogene'13AELoss-34.061AB E3_Aa0
1761827.86SUPT16H'protein_coding'126AELoss-20.543EU E16a_E17a0.00
1771837.86AC007308.1'processed_transcript'12AELoss-29.582EU AB ENST000004307190
1781847.84CCDC12'protein_coding'925AELoss-40.753EU AB E4_Db100.00
1791857.84XXyac-R12DG2.3'protein_coding'416AELoss-134.528AB CE E2_Aa0
1801867.83XPO1'protein_coding'3188AELoss-19.0722EU ES AB E6_Aa40.00
1811877.81SNRNP35'protein_coding'513AELoss-35.746EU AB E5_Ad0
1821887.79AC024075.1'lincRNA'12AELoss-132.991AB E1_Da0
1831897.79GPR17'protein_coding'713DELoss-221.670N/AGPR17N/A
1841907.78TAPBPL'protein_coding'218AELoss-97.997EU ES AB E14a_E15a0.00
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