Summary page for comparison: 'OLG01_TIC_vs_OLG04_PRI' (HS0709_vs_HS1085) - Project: Oligo


Download complete candidate list as tab delimited text file: OLG01_TIC_vs_OLG04_PRI.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 9,664 (of 49,867 possible genes)

DE Genes: 3,814

AE Genes: 7,245

Alternative Exon Usage (EU) Genes: 5,608

Alernative Exon Skipping (ES) Genes: 1,004

Alternative Exon Boundary (AB) Genes: 4,051

Intron Retention (IR) Genes: 449

Cryptic Exon (CE) Genes: 844


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1116.95C19orf29'protein_coding'422AELoss-491.176EU AB E4_Aa100.00
2216.53AASS'protein_coding'739AELoss-609.266EU AB IR E24_Dc0
3316.13AP000692.1'processed_transcript'12AELoss-1720.533EU AB E1a_E2a0
4415.35CHEK2'protein_coding'3065AELoss-748.2939EU ES AB IR E11b_E23b51.72
5515.33MAP2K2'protein_coding'826AELoss-319.004EU AB E7a_E7c100.00
6614.98ST3GAL5'protein_coding'1535AELoss-291.857EU AB E17_Aa0
7714.80MSH5'protein_coding'2878AELoss-816.6744EU ES AB CE E15a_E16a35.29
8814.75PANK1'protein_coding'720AELoss-247.364EU AB E4_Da100.00
9914.73AIFM1'protein_coding'624AELoss-564.666EU ES AB E11_Aa0.00
101013.77FAM116A'protein_coding'938AELoss-428.225EU AB E21_Ab0.00
111113.61AC133435.2'lincRNA'12AELoss-4386.193EU AB E1a_E2a0
121213.47AC128648.1'protein_coding'18AELoss-1055.896EU AB E2a_E3a100.00
131313.24MLL3'protein_coding'1899AELoss-395.9811EU AB CE E62a_E63a0.00
141413.08FARP1'protein_coding'839AELoss-412.6615EU AB IR E20_Aa0
151512.93RWDD2B'protein_coding'718AELoss-213.9710EU ES AB E2_Da40.00
161612.89ZNF283'protein_coding'942AELoss-292.3417EU ES AB CE E17_Db25.00
171712.50AC005197.3'protein_coding'12AELoss-214.802AB E1_Da0
181812.42AKT2'protein_coding'2672AELoss-172.0211EU ES AB E9_Aa0.00
191912.40AC034193.2'lincRNA'12AELoss-207.192AB E1_Da0
202012.39C7orf44'protein_coding'2047AELoss-279.6513EU ES AB IR E11_Df25.00
212112.35MRPS18B'protein_coding'513AELoss-217.012EU AB E2_Dd0
222212.21DHTKD1'protein_coding'627AELoss-180.712AB E16_Db0
232312.14MORC2'protein_coding'638AELoss-136.612AB E2_Da0
242412.12SLC25A17'protein_coding'1644AELoss-174.495AB E3_Da0
252512.12MED24'protein_coding'1350AELoss-250.059EU AB E2_Aa50.00
262612.01AC012652.5'lincRNA'13AELoss-453.123EU AB E2a_E3a100.00
272711.97ZNF684'protein_coding'614AELoss-227.694EU AB E5_Ab0
282811.95RP1-12G14.4'pseudogene'22AELoss-1002.112AB E1_Ab0
292911.84AC079316.2'lincRNA'12AELoss-151.092AB E1_Da0
303011.67SLC25A15'protein_coding'720AELoss-154.134EU AB CE E9_Aa0
313111.63KIAA1704'protein_coding'824AELoss-191.8414EU AB E13_Aa20.00
323211.57DOCK4'protein_coding'2187AELoss-207.326EU AB CE E51_Aa0.00
333311.37GTPBP5'protein_coding'1330AELoss-571.9127EU ES AB E3_Db40.00
343411.33OGT'protein_coding'1246AELoss-161.4610EU ES AB E4_Da0.00
353511.25ZNF425'protein_coding'512AELoss-147.232AB E5_Ab0
363611.22TNRC18'protein_coding'1565AELoss-73.519EU ES AB E25_Da0.00
373711.14ELK4'protein_coding'38AELoss-92.641AB E2_Da0
383811.07MMADHC'protein_coding'621AELoss-161.245EU ES AB E8_Da50.00
393910.97FIS1'protein_coding'919AELoss-711.616EU ES AB E5_Aa50.00
404010.94PHC3'protein_coding'2459AELoss-124.0315EU AB E6_Da0.00
414110.83KCNQ2'protein_coding'1532AELoss-70.0516EU AB CE ER11a33.33
424210.79CHN2'protein_coding'2664AELoss-115.0328EU ES AB E7_Aa30.00
434310.77ACTA2'protein_coding'717AELoss-86.302EU AB E4_Db0
444410.70AC087742.1'lincRNA'16AELoss-248.318EU AB IR E1a_E2a100.00
454510.65SEPT2'protein_coding'47102AELoss-458.257EU ES AB E12_Da0.00
464610.65C10orf18'protein_coding'1239AELoss-92.7611EU AB E23_Db14.29
474710.62POLR2B'protein_coding'1347AELoss-98.326EU AB E3_Ab0
484810.61TMEM104'protein_coding'213AELoss-93.851AB E3_Da0
494910.59HMGB1'protein_coding'1227AELoss-132.9513EU ES AB E6b_E7b33.33
505010.57CYB561D1'protein_coding'815AELoss-546.153EU AB E2_Db0
515110.54AC007216.1'pseudogene'13AELoss-448.025EU AB E2a_E3a0.00
525210.51AL035420.2'lincRNA'12AEGain125.602EU AB ER2a0
535310.49SON'protein_coding'2558AELoss-88.2710EU AB E3_Da20.00
545410.46DHX40'protein_coding'325AELoss-94.954EU AB E10_Aa0
555510.45VGLL4'protein_coding'1843AELoss-70.6914EU ES AB E10_Aa50.00
565610.44PRPF3'protein_coding'829AELoss-488.187EU AB IR E14_Aa0
575710.42DHX34'protein_coding'633AELoss-375.021AB E15_Aa0
585810.40FAM45A'protein_coding'1130AELoss-342.509EU ES AB E11b_E12a25.00
595910.39AMT'protein_coding'2554AELoss-70.125EU AB E2_Aa0.00
606010.31NDUFS2'protein_coding'1545AELoss-62.526EU AB E13_Aa0
616110.28CBS'protein_coding'1848AELoss-51.886EU AB E4_Aa0.00
626210.24SNAP25'protein_coding'514AEGain7.979EU ES AB E4a_E10a66.67
636310.23CHCHD2'protein_coding'26AELoss-112.363EU AB E1_Ab0
646410.23PDHB'protein_coding'1034AELoss-106.578EU AB E1_Dg40.00
656510.13TAF13'protein_coding'27AELoss-83.443EU AB E5_Aa0
666610.12RPL7A'protein_coding'1127AELoss-85.876EU AB IR E2_Ab0.00
676710.11CD46'protein_coding'2736AELoss-65.523AB E5_Ae0
686810.07GFPT1'protein_coding'530AELoss-46.403EU AB E3_Da0
696910.04CNOT10'protein_coding'1952AELoss-272.7619EU AB E21_Ab27.27
707010.02MLLT6'protein_coding'1038AELoss-406.363EU AB E13_Db0.00
717110.00ING4'protein_coding'2346AELoss-300.536EU ES AB E4_Aa50.00
72729.98IDH1'protein_coding'1338AELoss-33.967EU ES AB CE E2_Aa100.00
73739.95AC007620.1'processed_transcript'12AELoss-71.201AB E1_Da0
74749.87MKRN1'protein_coding'1644AELoss-85.236EU AB E9_Aa0.00
75759.82ETV5'protein_coding'1439AELoss-40.584AB E8_Db0
76769.78AC130686.3'protein_coding'517AELoss-63.2018EU AB IR E9_Db58.33
77779.78RETSAT'protein_coding'1030AELoss-83.474EU AB E6_Da0
78789.78RNF121'protein_coding'418AELoss-46.741AB E4_Aa0
79799.75ZNF3'protein_coding'1639AELoss-68.778EU AB E4_Dc0.00
80809.70XXyac-R12DG2.3'protein_coding'416AELoss-131.889EU AB CE E2_Aa100.00
81819.70CDC16'protein_coding'1237AELoss-57.4511EU AB IR CE E18_Aa50.00
82829.69CC2D1A'protein_coding'535AELoss-56.573AB E24_Aa0
83839.67PPIL2'protein_coding'1658AELoss-27.1220EU AB IR E8_Da14.29
84849.66RABGEF1'protein_coding'1028AELoss-64.787EU AB E9a_E10a0.00
85859.65ACSS2'protein_coding'2770AELoss-36.6718EU AB IR E9_Aa50.00
86869.65FTSJ2'protein_coding'614AELoss-57.931AB E5_Da0
87879.61TAPBPL'protein_coding'218AELoss-231.949EU AB E14a_E15a0.00
88889.61SNRNP35'protein_coding'513AELoss-78.577EU ES AB E5_Ad0.00
89899.58TOP3A'protein_coding'835AELoss-31.065EU AB E19_Db100.00
90909.58PSIP1'protein_coding'1134AELoss-78.0613EU AB IR E9a_E10a25.00
91919.56ARIH2'protein_coding'3576AELoss-76.3136EU AB E5_Dd35.71
92929.54NOP14'protein_coding'323AELoss-64.032EU AB E19_Aa0
93939.54CRTC2'protein_coding'933AELoss-218.253EU AB E8_Aa0.00
94949.51MTRF1'protein_coding'1133AELoss-66.296EU ES AB E6_Da50.00
95959.51MTA1'protein_coding'1954AELoss-54.355EU ES AB E10_Da0.00
96969.49C7orf46'protein_coding'821AELoss-306.224EU AB E3_Da0.00
97979.49ANO10'protein_coding'1952AELoss-71.048EU AB E4_Ab25.00
98989.46C17orf45'protein_coding'2044AELoss-23.2125EU AB ER2j60.00
99999.45GNL3L'protein_coding'530AELoss-101.628EU AB E19e_E19d66.67
1001009.43AC073940.1'pseudogene'12AELoss-157.204EU AB E2_Aa100.00
1011019.43PHACTR4'protein_coding'729AELoss-242.207EU AB E19_Dc25.00
1021029.40MAP3K7IP2'protein_coding'619AELoss-201.222AB E5_Aa0
1031039.37KIAA1033'protein_coding'234AELoss-39.437EU AB CE E25_Da0.00
1041049.35AGRN'protein_coding'1054AELoss-56.963EU AB E25_Aa0
1051059.34CYP20A1'protein_coding'1443AELoss-137.9710EU ES AB CE E7a_E10a60.00
1061069.32AL138795.6'protein_coding'212AELoss-224.1710EU AB E8_Da0
1071079.32EIF2B3'protein_coding'1131AELoss-69.0810EU ES AB E8_Db33.33
1081089.32AC004540.1'processed_transcript'822AELoss-26.469EU ES AB E6_Da33.33
1091099.32DUS4L'protein_coding'1330AELoss-38.224EU AB E7_Dc100.00
1101109.30AKR1B1'protein_coding'1641AELoss-221.033EU AB E5_Ab0
1111119.29EIF2B4'protein_coding'1136AELoss-64.9613EU AB E2_Dn71.43
1121129.26PARP1'protein_coding'1042AELoss-30.674EU AB ER24c100.00
1131139.25POLM'protein_coding'2049AELoss-43.366EU AB E6_Ab33.33
1141149.24VCAN'protein_coding'518AELoss-44.187EU AB CE E13a_E14a0.00
1151159.24ATL2'protein_coding'1744AELoss-65.0916EU AB IR E4_Da20.00
1161169.22SEC63'protein_coding'1244AELoss-63.926EU AB E11_Aa0.00
1171179.20HBEGF'protein_coding'310AELoss-269.351AB E5_Aa0
1181189.19MLC1'protein_coding'722AELoss-62.815EU ES E7a_E9a0.00
1191199.19DBR1'protein_coding'414AELoss-60.692EU AB E4_Da0
1201209.19PSME4'protein_coding'1369AELoss-43.3210EU AB CE E10_Aa16.67
1211219.19POLR2H'protein_coding'1433AELoss-47.406EU AB E6_Aa0.00
1221229.17EIF3L'protein_coding'1642AELoss-36.411AB E2_Da0
1231239.15SLC2A11'protein_coding'3070AELoss-97.6211EU AB E13_Df50.00
1241249.15POLR3H'protein_coding'1026AELoss-124.593EU AB E3_Db100.00
1251259.15PQLC2'protein_coding'923AELoss-187.412EU AB E10_Aa0
1261269.14WDR32'protein_coding'514AELoss-50.871AB E8_Db0
1271279.10KDELC2'protein_coding'311AELoss-37.373EU AB E7_Da0
1281289.08AIMP2'protein_coding'412AELoss-41.891AB E3_Aa0
1291299.08SF3A3'protein_coding'932AELoss-26.594EU AB E15_Aa100.00
1301309.07FAM73A'protein_coding'422AELoss-282.973EU AB E10f_E11a0
1311319.04MSH6'protein_coding'822AELoss-37.843AB E5_Da0
1321329.04COPS7B'protein_coding'2247AELoss-150.667EU AB E4_Ae50.00
1331339.02KLHDC8A'protein_coding'414AELoss-7.695EU AB E9_Da50.00
1341349.00LZTS2'protein_coding'923AELoss-32.965EU AB IR E7_Aa0
1351358.99ALG3'protein_coding'1638AELoss-38.954EU AB E5_Df0
1361368.96RANBP2'protein_coding'1149AELoss-189.884EU AB E13_Dc0.00
1371378.93TOP2A'protein_coding'557AELoss-10.038EU AB E15_Da25.00
1381388.93CCNL2'protein_coding'2158AELoss-36.857EU AB E9_Da0.00
1391398.89ABHD14A'protein_coding'1140AELoss-232.862AB E5_Ab0
1401408.89AFG3L1'processed_transcript'1841AELoss-143.615EU AB E2_Dc0
1411418.88C9orf80'protein_coding'720AELoss-177.707EU AB E3_Db0.00
1421428.87RAB3GAP2'protein_coding'1155AELoss-36.444EU AB CE E37_Aa0
1431438.87VHL'protein_coding'512AELoss-27.694EU ES AB E2_Aa0.00
1441448.81RP11-3J10.3'pseudogene'23AELoss-49.922EU AB ENST000003965190
1451458.79AC009065.2'lincRNA'12AELoss-159.983EU AB E1a_E2a0
1461468.78H6PD'protein_coding'27AELoss-196.274EU AB E5_Ac0.00
1471478.77RPL23A'protein_coding'718AELoss-21.3121EU ES AB IR CE E4a_E5b40.00
1481488.76CTD-2124B20.1'protein_coding'23AELoss-29.632AB E1_Db0
1491498.71WNK1'protein_coding'431AELoss-31.376EU E28a_E29a40.00
1501508.71TRIM22'protein_coding'1233AELoss-31.3312EU AB E9_Da42.86
1511518.71ZNF445'protein_coding'730AELoss-40.404EU AB CE E2_Da0
1521528.69AGAP2'protein_coding'220AELoss-61.216EU ES IR E15a_E16a100.00
1531538.68FKBP11'protein_coding'38AELoss-33.161AB E7_Da0
1541548.65HN1'protein_coding'1224AELoss-26.115EU ES AB E5_Da0.00
1551558.63AC004447.1'lincRNA'12AELoss-146.102EU AB E1a_E2a0
1561568.63AL589863.1'pseudogene'13AELoss-37.872AB E2_Aa0
1571578.63AC133555.1'protein_coding'14AELoss-268.874EU AB E3a_E4a0
1581588.61FUS'protein_coding'1236AELoss-45.8710EU AB E6a_E7b0.00
1591598.61HLA-B'protein_coding'1029AELoss-32.639EU AB E1f_E1o25.00
1601608.60AC138409.3'protein_coding'28AELoss-155.3111EU AB IR E5a_E6a33.33
1611618.60AL590714.1'protein_coding'15AELoss-95.436EU AB IR CE E1a_E2a100.00
1621628.60ARMC10'protein_coding'1024AELoss-149.245EU ES AB E9_Aa0.00
1631638.59EEF1A1'protein_coding'1131AELoss-144.1216EU AB ER6a25.00
1641648.57AC010323.2'lincRNA'12AELoss-209.943EU AB E1a_E2a0
1651658.56XPO1'protein_coding'3188AELoss-27.009EU AB E6_Aa0.00
1661668.56AL671710.1'lincRNA'15AELoss-27.084EU ES AB E1a_E5a100.00
1671678.55NDUFB5'protein_coding'1640AELoss-37.4714EU ES AB E7_Aa71.43
1681688.55YIF1B'protein_coding'513AELoss-26.862EU AB E9_Da0
1691698.54CROCCL1'processed_transcript'420AELoss-158.776EU AB IR E11_Db0
1701708.54TRAPPC2'protein_coding'819AELoss-132.705EU AB E5a_E5b0.00
1711718.54DHCR24'protein_coding'212AELoss-36.852EU AB E6a_E7a0
1721728.52TFRC'protein_coding'1546AELoss-17.716EU AB E16_Aa0.00
1731738.51AC007308.1'processed_transcript'12AELoss-198.052EU AB E1a_E2a0
1741748.49ZNF791'protein_coding'410AELoss-32.352EU AB E5_Dd0
1751758.47SLC27A1'protein_coding'418AELoss-27.843AB E8_Aa0
1761768.47RP11-179H18.3'processed_transcript'12AELoss-138.011AB E1_Da0
1771778.46CNN3'protein_coding'617AELoss-43.073AB E3_Aa0
1781788.46ARFGAP3'protein_coding'1228AELoss-36.716EU AB E2_Da0.00
1791798.45FNBP1'protein_coding'1643AELoss-112.7512EU ES AB IR CE E17a_E24b0.00
1801808.43AC121253.1'protein_coding'46AELoss-33.943AB E1_Dd0
1811818.42LIMK1'protein_coding'931AELoss-160.663EU AB E16_Aa0
1821828.38GPR17'protein_coding'713DELoss-332.680N/AGPR17N/A
1831838.38GBA'protein_coding'1746AELoss-104.888EU AB E5_Aa0.00
1841848.34NRSN2'protein_coding'514AELoss-35.513EU AB E6_Db0
1851858.31PTPRZ1'protein_coding'1255AELoss-37.8914EU ES AB E17_Da14.29
1861868.29AC024075.1'lincRNA'12AELoss-190.082EU AB E1_Da0
1871878.29ZNF669'protein_coding'713AELoss-29.348EU AB E4_Dc25.00
1881888.29SUPT16H'protein_coding'126AELoss-24.061EU E16a_E17a0
1891898.29FOXM1'protein_coding'310AELoss-7.174EU ES AB E9_Aa100.00
1901908.26MOV10'protein_coding'2066AELoss-32.4511EU ES AB E4_Da66.67
1911918.26CKS1B'protein_coding'715AELoss-23.153AB E4_Aa0
1921928.26MREG'protein_coding'616AELoss-47.315EU AB E9_Aa100.00
1931938.25SFRS18'protein_coding'1032AELoss-127.299AB E3_Dc0
1941948.24SNORA72'lincRNA'12AELoss-133.491AB E1_Da0
1951958.23TMEM111'protein_coding'517AELoss-108.783AB E2_Aa0
1961968.21STMN2'protein_coding'15DELoss-296.050N/ASTMN2N/A
1971978.20SLC12A9'protein_coding'1743AELoss-38.137EU AB ENST0000047401933.33
1981988.19TKT'protein_coding'1652AELoss-21.306EU ES AB E6_Da0.00
1991998.18BAX'protein_coding'610AELoss-19.961AB E5_Da0
2002008.18ARNT'protein_coding'1042AELoss-34.525EU AB E11_Aa0.00
2012018.16CTC-398G3.2'pseudogene'24AELoss-21.793EU AB E1_Ab0
2022028.11MVP'protein_coding'424AELoss-15.206EU AB E1a_E2b75.00
2032038.11MDM4'protein_coding'1358AELoss-33.889EU AB E18_Da33.33
2042048.08SNUPN'protein_coding'412AELoss-145.801AB E2_Aa0
2052058.07AC140061.3'pseudogene'12AELoss-33.371AB E2_Aa0
2062068.06ATP2B1'protein_coding'523AELoss-20.007EU ES AB ENST0000035914260.00
2072078.04RPS27'protein_coding'410AELoss-27.744EU E2b_E3a0.00
2082088.03TOR1AIP2'protein_coding'616AELoss-39.751AB E4_Aa0
2092098.03C9orf86'protein_coding'1643AELoss-23.789EU AB E10_Db0.00
2102108.03IPP'protein_coding'517AELoss-29.834ES AB E11_Aa0
2112118.01DLL3'protein_coding'210AELoss-20.522EU AB E4a_E5a0
2122128.01NLGN4X'protein_coding'720AELoss-200.634EU AB CE E5_Aa0
2132137.99XRN1'protein_coding'1473AELoss-30.2712EU ES AB E2_Da0.00
2142147.98EWSR1'protein_coding'2562AELoss-31.4323EU AB CE ER6b66.67
2152157.98CCNL1'protein_coding'2662AELoss-19.2526EU AB IR E4o_E4q0.00
2162167.98AC004086.1'protein_coding'28AELoss-27.256EU E2a_E3a40.00
2172177.97STRBP'protein_coding'1042AELoss-122.5014EU AB IR CE E2_Aa50.00
2182187.96SLC4A10'protein_coding'1251AELoss-63.1710EU ES AB ER34a75.00
2192197.96TAPBP'protein_coding'1329AELoss-96.715EU AB E4_Aa0.00
2202207.96PEG10'protein_coding'49AELoss-24.254EU AB E2d_E2d0.00
2212217.96USP4'protein_coding'1448AELoss-28.0810EU ES AB E19_Da16.67
2222227.95WDR27'protein_coding'1546AELoss-23.548EU AB CE E29_Aa0.00
2232237.93AC010733.5'processed_transcript'12AELoss-96.432EU AB E2_Aa0
2242247.93RP11-405L18.3'processed_transcript'13AELoss-33.222AB E2_Aa0
2252257.92FAM107A'protein_coding'919DELoss-242.350N/AFAM107AN/A
2262267.92AC005696.1'lincRNA'12AELoss-29.051AB E1_Da0
2272277.90GS1-174L6.1'processed_transcript'12AELoss-120.712EU AB E1a_E2a0
2282287.90HADHA'protein_coding'528AELoss-25.975EU ES AB E5_Da50.00
2292297.89ARL6IP5'protein_coding'718AELoss-44.937EU AB E4_Aa100.00
2302307.88NUB1'protein_coding'1340AELoss-90.6010EU AB E10e_E10c25.00
2312317.87ILF2'protein_coding'420AELoss-12.123EU AB E6_Db100.00
2322327.87AC138951.4'pseudogene'12AELoss-57.063EU AB E2_Aa100.00
2332337.86GFAP'protein_coding'411DELoss-232.892EU GFAP0.00
2342347.86RPL18A'protein_coding'27AELoss-20.597EU AB E1a_E2a40.00
2352357.84ZNF14'protein_coding'26AELoss-28.222AB E1_Db0
2362367.83NCOA6'protein_coding'525AELoss-25.263EU ES AB E2_Aa0.00
2372377.80IDH3B'protein_coding'1541AELoss-22.234EU E5c_E5c0.00
2382387.79C1orf61'protein_coding'2757AELoss-31.0627EU ES AB IR E10_Dh0.00
2392397.77C3orf75'protein_coding'1840AELoss-94.054EU AB E10_Aa0
2402407.77AL354696.3'lincRNA'12AELoss-154.272AB E1_Da0
2412417.76SR140'protein_coding'2478AELoss-33.6417EU ES AB E33_Aa40.00
2422427.75FAM162A'protein_coding'418AELoss-14.8913EU AB E6b_E6c62.50
2432437.74ZNF18'protein_coding'311AELoss-25.731AB E3_Da0
2442447.74LAMP1'protein_coding'516AELoss-81.385EU AB E4a_E5a33.33
2452457.74ANP32B'protein_coding'414AELoss-37.124EU AB E6_Dc50.00
2462467.74ZNF789'protein_coding'1532AELoss-122.035EU AB E7_Da50.00
2472477.74SSB'protein_coding'1333AELoss-32.697EU ES AB E6_Dc0.00
2482487.73FRMD6'protein_coding'320AELoss-9.574EU AB E4_Aa0.00
2492497.73SLC1A2'protein_coding'622DELoss-211.860N/ASLC1A2N/A
2502507.72PPP2R4'protein_coding'2754AELoss-50.177EU ES AB E5_Ab100.00
2512517.72MED12L'protein_coding'1063AELoss-20.246EU AB IR I19_AR10.00


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1116.95C19orf29'protein_coding'422AELoss-491.176EU AB E4_Aa100.00
2216.53AASS'protein_coding'739AELoss-609.266EU AB IR E24_Dc0
3316.13AP000692.1'processed_transcript'12AELoss-1720.533EU AB E1a_E2a0
4415.35CHEK2'protein_coding'3065AELoss-748.2939EU ES AB IR E11b_E23b51.72
5515.33MAP2K2'protein_coding'826AELoss-319.004EU AB E7a_E7c100.00
6614.98ST3GAL5'protein_coding'1535AELoss-291.857EU AB E17_Aa0
7714.80MSH5'protein_coding'2878AELoss-816.6744EU ES AB CE E15a_E16a35.29
8814.75PANK1'protein_coding'720AELoss-247.364EU AB E4_Da100.00
9914.73AIFM1'protein_coding'624AELoss-564.666EU ES AB E11_Aa0.00
101013.77FAM116A'protein_coding'938AELoss-428.225EU AB E21_Ab0.00
111113.61AC133435.2'lincRNA'12AELoss-4386.193EU AB E1a_E2a0
121213.47AC128648.1'protein_coding'18AELoss-1055.896EU AB E2a_E3a100.00
131313.24MLL3'protein_coding'1899AELoss-395.9811EU AB CE E62a_E63a0.00
141413.08FARP1'protein_coding'839AELoss-412.6615EU AB IR E20_Aa0
151512.93RWDD2B'protein_coding'718AELoss-213.9710EU ES AB E2_Da40.00
161612.89ZNF283'protein_coding'942AELoss-292.3417EU ES AB CE E17_Db25.00
171712.50AC005197.3'protein_coding'12AELoss-214.802AB E1_Da0
181812.42AKT2'protein_coding'2672AELoss-172.0211EU ES AB E9_Aa0.00
191912.40AC034193.2'lincRNA'12AELoss-207.192AB E1_Da0
202012.39C7orf44'protein_coding'2047AELoss-279.6513EU ES AB IR E11_Df25.00
212112.35MRPS18B'protein_coding'513AELoss-217.012EU AB E2_Dd0
222212.21DHTKD1'protein_coding'627AELoss-180.712AB E16_Db0
232312.14MORC2'protein_coding'638AELoss-136.612AB E2_Da0
242412.12SLC25A17'protein_coding'1644AELoss-174.495AB E3_Da0
252512.12MED24'protein_coding'1350AELoss-250.059EU AB E2_Aa50.00
262612.01AC012652.5'lincRNA'13AELoss-453.123EU AB E2a_E3a100.00
272711.97ZNF684'protein_coding'614AELoss-227.694EU AB E5_Ab0
282811.95RP1-12G14.4'pseudogene'22AELoss-1002.112AB E1_Ab0
292911.84AC079316.2'lincRNA'12AELoss-151.092AB E1_Da0
303011.67SLC25A15'protein_coding'720AELoss-154.134EU AB CE E9_Aa0
313111.63KIAA1704'protein_coding'824AELoss-191.8414EU AB E13_Aa20.00
323211.57DOCK4'protein_coding'2187AELoss-207.326EU AB CE E51_Aa0.00
333311.37GTPBP5'protein_coding'1330AELoss-571.9127EU ES AB E3_Db40.00
343411.33OGT'protein_coding'1246AELoss-161.4610EU ES AB E4_Da0.00
353511.25ZNF425'protein_coding'512AELoss-147.232AB E5_Ab0
363611.22TNRC18'protein_coding'1565AELoss-73.519EU ES AB E25_Da0.00
373711.14ELK4'protein_coding'38AELoss-92.641AB E2_Da0
383811.07MMADHC'protein_coding'621AELoss-161.245EU ES AB E8_Da50.00
393910.97FIS1'protein_coding'919AELoss-711.616EU ES AB E5_Aa50.00
404010.94PHC3'protein_coding'2459AELoss-124.0315EU AB E6_Da0.00
414110.83KCNQ2'protein_coding'1532AELoss-70.0516EU AB CE ER11a33.33
424210.79CHN2'protein_coding'2664AELoss-115.0328EU ES AB E7_Aa30.00
434310.77ACTA2'protein_coding'717AELoss-86.302EU AB E4_Db0
444410.70AC087742.1'lincRNA'16AELoss-248.318EU AB IR E1a_E2a100.00
454510.65SEPT2'protein_coding'47102AELoss-458.257EU ES AB E12_Da0.00
464610.65C10orf18'protein_coding'1239AELoss-92.7611EU AB E23_Db14.29
474710.62POLR2B'protein_coding'1347AELoss-98.326EU AB E3_Ab0
484810.61TMEM104'protein_coding'213AELoss-93.851AB E3_Da0
494910.59HMGB1'protein_coding'1227AELoss-132.9513EU ES AB E6b_E7b33.33
505010.57CYB561D1'protein_coding'815AELoss-546.153EU AB E2_Db0
515110.54AC007216.1'pseudogene'13AELoss-448.025EU AB E2a_E3a0.00
525210.51AL035420.2'lincRNA'12AEGain125.602EU AB ER2a0
535310.49SON'protein_coding'2558AELoss-88.2710EU AB E3_Da20.00
545410.46DHX40'protein_coding'325AELoss-94.954EU AB E10_Aa0
555510.45VGLL4'protein_coding'1843AELoss-70.6914EU ES AB E10_Aa50.00
565610.44PRPF3'protein_coding'829AELoss-488.187EU AB IR E14_Aa0
575710.42DHX34'protein_coding'633AELoss-375.021AB E15_Aa0
585810.40FAM45A'protein_coding'1130AELoss-342.509EU ES AB E11b_E12a25.00
595910.39AMT'protein_coding'2554AELoss-70.125EU AB E2_Aa0.00
606010.31NDUFS2'protein_coding'1545AELoss-62.526EU AB E13_Aa0
616110.28CBS'protein_coding'1848AELoss-51.886EU AB E4_Aa0.00
626210.24SNAP25'protein_coding'514AEGain7.979EU ES AB E4a_E10a66.67
636310.23CHCHD2'protein_coding'26AELoss-112.363EU AB E1_Ab0
646410.23PDHB'protein_coding'1034AELoss-106.578EU AB E1_Dg40.00
656510.13TAF13'protein_coding'27AELoss-83.443EU AB E5_Aa0
666610.12RPL7A'protein_coding'1127AELoss-85.876EU AB IR E2_Ab0.00
676710.11CD46'protein_coding'2736AELoss-65.523AB E5_Ae0
686810.07GFPT1'protein_coding'530AELoss-46.403EU AB E3_Da0
696910.04CNOT10'protein_coding'1952AELoss-272.7619EU AB E21_Ab27.27
707010.02MLLT6'protein_coding'1038AELoss-406.363EU AB E13_Db0.00
717110.00ING4'protein_coding'2346AELoss-300.536EU ES AB E4_Aa50.00
72729.98IDH1'protein_coding'1338AELoss-33.967EU ES AB CE E2_Aa100.00
73739.95AC007620.1'processed_transcript'12AELoss-71.201AB E1_Da0
74749.87MKRN1'protein_coding'1644AELoss-85.236EU AB E9_Aa0.00
75759.82ETV5'protein_coding'1439AELoss-40.584AB E8_Db0
76769.78AC130686.3'protein_coding'517AELoss-63.2018EU AB IR E9_Db58.33
77779.78RETSAT'protein_coding'1030AELoss-83.474EU AB E6_Da0
78789.78RNF121'protein_coding'418AELoss-46.741AB E4_Aa0
79799.75ZNF3'protein_coding'1639AELoss-68.778EU AB E4_Dc0.00
80809.70XXyac-R12DG2.3'protein_coding'416AELoss-131.889EU AB CE E2_Aa100.00
81819.70CDC16'protein_coding'1237AELoss-57.4511EU AB IR CE E18_Aa50.00
82829.69CC2D1A'protein_coding'535AELoss-56.573AB E24_Aa0
83839.67PPIL2'protein_coding'1658AELoss-27.1220EU AB IR E8_Da14.29
84849.66RABGEF1'protein_coding'1028AELoss-64.787EU AB E9a_E10a0.00
85859.65ACSS2'protein_coding'2770AELoss-36.6718EU AB IR E9_Aa50.00
86869.65FTSJ2'protein_coding'614AELoss-57.931AB E5_Da0
87879.61TAPBPL'protein_coding'218AELoss-231.949EU AB E14a_E15a0.00
88889.61SNRNP35'protein_coding'513AELoss-78.577EU ES AB E5_Ad0.00
89899.58TOP3A'protein_coding'835AELoss-31.065EU AB E19_Db100.00
90909.58PSIP1'protein_coding'1134AELoss-78.0613EU AB IR E9a_E10a25.00
91919.56ARIH2'protein_coding'3576AELoss-76.3136EU AB E5_Dd35.71
92929.54NOP14'protein_coding'323AELoss-64.032EU AB E19_Aa0
93939.54CRTC2'protein_coding'933AELoss-218.253EU AB E8_Aa0.00
94949.51MTRF1'protein_coding'1133AELoss-66.296EU ES AB E6_Da50.00
95959.51MTA1'protein_coding'1954AELoss-54.355EU ES AB E10_Da0.00
96969.49C7orf46'protein_coding'821AELoss-306.224EU AB E3_Da0.00
97979.49ANO10'protein_coding'1952AELoss-71.048EU AB E4_Ab25.00
98989.46C17orf45'protein_coding'2044AELoss-23.2125EU AB ER2j60.00
99999.45GNL3L'protein_coding'530AELoss-101.628EU AB E19e_E19d66.67
1001009.43AC073940.1'pseudogene'12AELoss-157.204EU AB E2_Aa100.00
1011019.43PHACTR4'protein_coding'729AELoss-242.207EU AB E19_Dc25.00
1021029.40MAP3K7IP2'protein_coding'619AELoss-201.222AB E5_Aa0
1031039.37KIAA1033'protein_coding'234AELoss-39.437EU AB CE E25_Da0.00
1041049.35AGRN'protein_coding'1054AELoss-56.963EU AB E25_Aa0
1051059.34CYP20A1'protein_coding'1443AELoss-137.9710EU ES AB CE E7a_E10a60.00
1061069.32AL138795.6'protein_coding'212AELoss-224.1710EU AB E8_Da0
1071079.32EIF2B3'protein_coding'1131AELoss-69.0810EU ES AB E8_Db33.33
1081089.32AC004540.1'processed_transcript'822AELoss-26.469EU ES AB E6_Da33.33
1091099.32DUS4L'protein_coding'1330AELoss-38.224EU AB E7_Dc100.00
1101109.30AKR1B1'protein_coding'1641AELoss-221.033EU AB E5_Ab0
1111119.29EIF2B4'protein_coding'1136AELoss-64.9613EU AB E2_Dn71.43
1121129.26PARP1'protein_coding'1042AELoss-30.674EU AB ER24c100.00
1131139.25POLM'protein_coding'2049AELoss-43.366EU AB E6_Ab33.33
1141149.24VCAN'protein_coding'518AELoss-44.187EU AB CE E13a_E14a0.00
1151159.24ATL2'protein_coding'1744AELoss-65.0916EU AB IR E4_Da20.00
1161169.22SEC63'protein_coding'1244AELoss-63.926EU AB E11_Aa0.00
1171179.20HBEGF'protein_coding'310AELoss-269.351AB E5_Aa0
1181189.19MLC1'protein_coding'722AELoss-62.815EU ES E7a_E9a0.00
1191199.19DBR1'protein_coding'414AELoss-60.692EU AB E4_Da0
1201209.19PSME4'protein_coding'1369AELoss-43.3210EU AB CE E10_Aa16.67
1211219.19POLR2H'protein_coding'1433AELoss-47.406EU AB E6_Aa0.00
1221229.17EIF3L'protein_coding'1642AELoss-36.411AB E2_Da0
1231239.15SLC2A11'protein_coding'3070AELoss-97.6211EU AB E13_Df50.00
1241249.15POLR3H'protein_coding'1026AELoss-124.593EU AB E3_Db100.00
1251259.15PQLC2'protein_coding'923AELoss-187.412EU AB E10_Aa0
1261269.14WDR32'protein_coding'514AELoss-50.871AB E8_Db0
1271279.10KDELC2'protein_coding'311AELoss-37.373EU AB E7_Da0
1281289.08AIMP2'protein_coding'412AELoss-41.891AB E3_Aa0
1291299.08SF3A3'protein_coding'932AELoss-26.594EU AB E15_Aa100.00
1301309.07FAM73A'protein_coding'422AELoss-282.973EU AB E10f_E11a0
1311319.04MSH6'protein_coding'822AELoss-37.843AB E5_Da0
1321329.04COPS7B'protein_coding'2247AELoss-150.667EU AB E4_Ae50.00
1331339.02KLHDC8A'protein_coding'414AELoss-7.695EU AB E9_Da50.00
1341349.00LZTS2'protein_coding'923AELoss-32.965EU AB IR E7_Aa0
1351358.99ALG3'protein_coding'1638AELoss-38.954EU AB E5_Df0
1361368.96RANBP2'protein_coding'1149AELoss-189.884EU AB E13_Dc0.00
1371378.93TOP2A'protein_coding'557AELoss-10.038EU AB E15_Da25.00
1381388.93CCNL2'protein_coding'2158AELoss-36.857EU AB E9_Da0.00
1391398.89ABHD14A'protein_coding'1140AELoss-232.862AB E5_Ab0
1401408.89AFG3L1'processed_transcript'1841AELoss-143.615EU AB E2_Dc0
1411418.88C9orf80'protein_coding'720AELoss-177.707EU AB E3_Db0.00
1421428.87RAB3GAP2'protein_coding'1155AELoss-36.444EU AB CE E37_Aa0
1431438.87VHL'protein_coding'512AELoss-27.694EU ES AB E2_Aa0.00
1441448.81RP11-3J10.3'pseudogene'23AELoss-49.922EU AB ENST000003965190
1451458.79AC009065.2'lincRNA'12AELoss-159.983EU AB E1a_E2a0
1461468.78H6PD'protein_coding'27AELoss-196.274EU AB E5_Ac0.00
1471478.77RPL23A'protein_coding'718AELoss-21.3121EU ES AB IR CE E4a_E5b40.00
1481488.76CTD-2124B20.1'protein_coding'23AELoss-29.632AB E1_Db0
1491498.71WNK1'protein_coding'431AELoss-31.376EU E28a_E29a40.00
1501508.71TRIM22'protein_coding'1233AELoss-31.3312EU AB E9_Da42.86
1511518.71ZNF445'protein_coding'730AELoss-40.404EU AB CE E2_Da0
1521528.69AGAP2'protein_coding'220AELoss-61.216EU ES IR E15a_E16a100.00
1531538.68FKBP11'protein_coding'38AELoss-33.161AB E7_Da0
1541548.65HN1'protein_coding'1224AELoss-26.115EU ES AB E5_Da0.00
1551558.63AC004447.1'lincRNA'12AELoss-146.102EU AB E1a_E2a0
1561568.63AL589863.1'pseudogene'13AELoss-37.872AB E2_Aa0
1571578.63AC133555.1'protein_coding'14AELoss-268.874EU AB E3a_E4a0
1581588.61FUS'protein_coding'1236AELoss-45.8710EU AB E6a_E7b0.00
1591598.61HLA-B'protein_coding'1029AELoss-32.639EU AB E1f_E1o25.00
1601608.60AC138409.3'protein_coding'28AELoss-155.3111EU AB IR E5a_E6a33.33
1611618.60AL590714.1'protein_coding'15AELoss-95.436EU AB IR CE E1a_E2a100.00
1621628.60ARMC10'protein_coding'1024AELoss-149.245EU ES AB E9_Aa0.00
1631638.59EEF1A1'protein_coding'1131AELoss-144.1216EU AB ER6a25.00
1641648.57AC010323.2'lincRNA'12AELoss-209.943EU AB E1a_E2a0
1651658.56XPO1'protein_coding'3188AELoss-27.009EU AB E6_Aa0.00
1661668.56AL671710.1'lincRNA'15AELoss-27.084EU ES AB E1a_E5a100.00
1671678.55NDUFB5'protein_coding'1640AELoss-37.4714EU ES AB E7_Aa71.43
1681688.55YIF1B'protein_coding'513AELoss-26.862EU AB E9_Da0
1691698.54CROCCL1'processed_transcript'420AELoss-158.776EU AB IR E11_Db0
1701708.54TRAPPC2'protein_coding'819AELoss-132.705EU AB E5a_E5b0.00
1711718.54DHCR24'protein_coding'212AELoss-36.852EU AB E6a_E7a0
1721728.52TFRC'protein_coding'1546AELoss-17.716EU AB E16_Aa0.00
1731738.51AC007308.1'processed_transcript'12AELoss-198.052EU AB E1a_E2a0
1741748.49ZNF791'protein_coding'410AELoss-32.352EU AB E5_Dd0
1751758.47SLC27A1'protein_coding'418AELoss-27.843AB E8_Aa0
1761768.47RP11-179H18.3'processed_transcript'12AELoss-138.011AB E1_Da0
1771778.46CNN3'protein_coding'617AELoss-43.073AB E3_Aa0
1781788.46ARFGAP3'protein_coding'1228AELoss-36.716EU AB E2_Da0.00
1791798.45FNBP1'protein_coding'1643AELoss-112.7512EU ES AB IR CE E17a_E24b0.00
1801808.43AC121253.1'protein_coding'46AELoss-33.943AB E1_Dd0
1811818.42LIMK1'protein_coding'931AELoss-160.663EU AB E16_Aa0
1821838.38GBA'protein_coding'1746AELoss-104.888EU AB E5_Aa0.00
1831848.34NRSN2'protein_coding'514AELoss-35.513EU AB E6_Db0
1841858.31PTPRZ1'protein_coding'1255AELoss-37.8914EU ES AB E17_Da14.29
1851868.29AC024075.1'lincRNA'12AELoss-190.082EU AB E1_Da0
1861878.29ZNF669'protein_coding'713AELoss-29.348EU AB E4_Dc25.00
1871888.29SUPT16H'protein_coding'126AELoss-24.061EU E16a_E17a0
1881898.29FOXM1'protein_coding'310AELoss-7.174EU ES AB E9_Aa100.00
1891908.26MOV10'protein_coding'2066AELoss-32.4511EU ES AB E4_Da66.67
1901918.26CKS1B'protein_coding'715AELoss-23.153AB E4_Aa0
1911928.26MREG'protein_coding'616AELoss-47.315EU AB E9_Aa100.00
1921938.25SFRS18'protein_coding'1032AELoss-127.299AB E3_Dc0
1931948.24SNORA72'lincRNA'12AELoss-133.491AB E1_Da0
1941958.23TMEM111'protein_coding'517AELoss-108.783AB E2_Aa0
1951978.20SLC12A9'protein_coding'1743AELoss-38.137EU AB ENST0000047401933.33
1961988.19TKT'protein_coding'1652AELoss-21.306EU ES AB E6_Da0.00
1971998.18BAX'protein_coding'610AELoss-19.961AB E5_Da0
1982008.18ARNT'protein_coding'1042AELoss-34.525EU AB E11_Aa0.00
1992018.16CTC-398G3.2'pseudogene'24AELoss-21.793EU AB E1_Ab0
2002028.11MVP'protein_coding'424AELoss-15.206EU AB E1a_E2b75.00
2012038.11MDM4'protein_coding'1358AELoss-33.889EU AB E18_Da33.33
2022048.08SNUPN'protein_coding'412AELoss-145.801AB E2_Aa0
2032058.07AC140061.3'pseudogene'12AELoss-33.371AB E2_Aa0
2042068.06ATP2B1'protein_coding'523AELoss-20.007EU ES AB ENST0000035914260.00
2052078.04RPS27'protein_coding'410AELoss-27.744EU E2b_E3a0.00
2062088.03TOR1AIP2'protein_coding'616AELoss-39.751AB E4_Aa0
2072098.03C9orf86'protein_coding'1643AELoss-23.789EU AB E10_Db0.00
2082108.03IPP'protein_coding'517AELoss-29.834ES AB E11_Aa0
2092118.01DLL3'protein_coding'210AELoss-20.522EU AB E4a_E5a0
2102128.01NLGN4X'protein_coding'720AELoss-200.634EU AB CE E5_Aa0
2112137.99XRN1'protein_coding'1473AELoss-30.2712EU ES AB E2_Da0.00
2122147.98EWSR1'protein_coding'2562AELoss-31.4323EU AB CE ER6b66.67
2132157.98CCNL1'protein_coding'2662AELoss-19.2526EU AB IR E4o_E4q0.00
2142167.98AC004086.1'protein_coding'28AELoss-27.256EU E2a_E3a40.00
2152177.97STRBP'protein_coding'1042AELoss-122.5014EU AB IR CE E2_Aa50.00
2162187.96SLC4A10'protein_coding'1251AELoss-63.1710EU ES AB ER34a75.00
2172197.96TAPBP'protein_coding'1329AELoss-96.715EU AB E4_Aa0.00
2182207.96PEG10'protein_coding'49AELoss-24.254EU AB E2d_E2d0.00
2192217.96USP4'protein_coding'1448AELoss-28.0810EU ES AB E19_Da16.67
2202227.95WDR27'protein_coding'1546AELoss-23.548EU AB CE E29_Aa0.00
2212237.93AC010733.5'processed_transcript'12AELoss-96.432EU AB E2_Aa0
2222247.93RP11-405L18.3'processed_transcript'13AELoss-33.222AB E2_Aa0
2232267.92AC005696.1'lincRNA'12AELoss-29.051AB E1_Da0
2242277.90GS1-174L6.1'processed_transcript'12AELoss-120.712EU AB E1a_E2a0
2252287.90HADHA'protein_coding'528AELoss-25.975EU ES AB E5_Da50.00
2262297.89ARL6IP5'protein_coding'718AELoss-44.937EU AB E4_Aa100.00
2272307.88NUB1'protein_coding'1340AELoss-90.6010EU AB E10e_E10c25.00
2282317.87ILF2'protein_coding'420AELoss-12.123EU AB E6_Db100.00
2292327.87AC138951.4'pseudogene'12AELoss-57.063EU AB E2_Aa100.00
2302337.86GFAP'protein_coding'411DELoss-232.892EU GFAP0.00
2312347.86RPL18A'protein_coding'27AELoss-20.597EU AB E1a_E2a40.00
2322357.84ZNF14'protein_coding'26AELoss-28.222AB E1_Db0
2332367.83NCOA6'protein_coding'525AELoss-25.263EU ES AB E2_Aa0.00
2342377.80IDH3B'protein_coding'1541AELoss-22.234EU E5c_E5c0.00
2352387.79C1orf61'protein_coding'2757AELoss-31.0627EU ES AB IR E10_Dh0.00
2362397.77C3orf75'protein_coding'1840AELoss-94.054EU AB E10_Aa0
2372407.77AL354696.3'lincRNA'12AELoss-154.272AB E1_Da0
2382417.76SR140'protein_coding'2478AELoss-33.6417EU ES AB E33_Aa40.00
2392427.75FAM162A'protein_coding'418AELoss-14.8913EU AB E6b_E6c62.50
2402437.74ZNF18'protein_coding'311AELoss-25.731AB E3_Da0
2412447.74LAMP1'protein_coding'516AELoss-81.385EU AB E4a_E5a33.33
2422457.74ANP32B'protein_coding'414AELoss-37.124EU AB E6_Dc50.00
2432467.74ZNF789'protein_coding'1532AELoss-122.035EU AB E7_Da50.00
2442477.74SSB'protein_coding'1333AELoss-32.697EU ES AB E6_Dc0.00
2452487.73FRMD6'protein_coding'320AELoss-9.574EU AB E4_Aa0.00
2462507.72PPP2R4'protein_coding'2754AELoss-50.177EU ES AB E5_Ab100.00
2472517.72MED12L'protein_coding'1063AELoss-20.246EU AB IR I19_AR10.00
2482527.72SUMF2'protein_coding'2241AELoss-17.987EU ES AB CE E4a_E9a0.00
2492537.72RPL3'protein_coding'2248AELoss-19.5415EU ES AB E1b_E3b18.18
2502557.72AC093616.1'processed_transcript'12AELoss-116.232AB E1_Da0
2512567.70EIF4B'protein_coding'520AELoss-20.826EU AB E14a_E15a0.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
15210.51AL035420.2'lincRNA'12AEGain125.602EU AB ER2a0
26210.24SNAP25'protein_coding'514AEGain7.979EU ES AB E4a_E10a66.67
32777.58BX322613.2'protein_coding'25DEGain190.930N/ABX322613.2N/A
43517.16WISP1'protein_coding'45DEGain142.690N/AWISP1N/A
53727.06RPS25'protein_coding'15AEGain29.275EU E2a_E3a75.00
63767.03AE000661.20'IG_C_gene'13DEGain130.920N/AAE000661.20N/A
73906.93ITM2C'protein_coding'719AEGain8.942ES AB ENST000003350050
84456.71SNX10'protein_coding'822AEGain14.5110EU AB IR CE E12_Aa0.00
94476.70SOX2OT'processed_transcript'1741AEGain17.4414EU ES AB ER4b50.00
104516.68AC104438.1'pseudogene'12AEGain6.591EU ER1a0
114666.61MFAP4'protein_coding'38DEGain97.751EU MFAP40
124826.54TSC22D4'protein_coding'617AEGain2.6011EU AB CE I1_AR283.33
134926.50SCAMP5'protein_coding'28AEGain5.186EU ES IR CE E3a_E5a0.00
145086.42AGTR1'protein_coding'1020DEGain85.500N/AAGTR1N/A
155796.18SLC25A46'protein_coding'313AEGain8.404EU AB CE I5_AR1100.00
166136.03GABBR1'protein_coding'2467AEGain4.9314EU ES AB IR E16a_E18a42.86
176146.03NAPB'protein_coding'719AEGain2.873EU AB E3_Db0.00
186226.01SEZ6L'protein_coding'1131AEGain10.523ES ENST00000343706100.00
196266.00FAM192A'protein_coding'29AEGain14.0010EU CE I1_AR100
206705.87FAM135A'protein_coding'834AEGain8.235EU CE I3_AR150.00
216905.81CLDND1'protein_coding'710AEGain5.652EU ES E1a_E4a100.00
227005.77DUSP4'protein_coding'514DEGain54.670N/ADUSP4N/A
237485.65RP11-367G6.1'pseudogene'24DEGain50.070N/ARP11-367G6.1N/A
247685.59TAGLN3'protein_coding'717AEGain9.788IR CE I5_AR10
257715.58INCA1'protein_coding'29AEGain12.241CE I7_AR10
267865.54MATR3'protein_coding'525AEGain9.047EU ES AB ER4a40.00
277885.54HOXC8'protein_coding'12DEGain46.530N/AHOXC8N/A
287945.52CIT'protein_coding'555AEGain10.7516EU ER9a64.29
297985.51FREM2'protein_coding'327DEGain45.580N/AFREM2N/A
308185.48NECAB1'protein_coding'317AEGain4.221AB E12_Da0
318275.47LYPLAL1'protein_coding'1223AEGain9.494ES CE I6_AR40
328315.46PEX5'protein_coding'725AEGain12.142EU CE I11_AR10
338345.46CDKN1A'protein_coding'716DEGain20.654EU ES AB CDKN1A100.00
348515.42AC106045.2'pseudogene'14AEGain8.203EU AB ER2a0.00
358865.35AC118282.2'protein_coding'24DEGain40.810N/AAC118282.2N/A
368975.34EHBP1'protein_coding'2163AEGain4.697EU AB CE I16_AR966.67
379195.30AC118282.5'protein_coding'23DEGain39.300N/AAC118282.5N/A
389215.29ZFAND2A'protein_coding'716AEGain9.693EU AB E2_Ad0.00
399225.29AC015917.1'pseudogene'12AEGain6.692EU AB ER2a0
409345.26FAM168A'protein_coding'39AEGain20.452ES E3a_E5a100.00
419465.25ARHGAP26'protein_coding'2260AEGain9.9324EU ES AB IR ENST0000046913117.65
429745.21KIAA0652'protein_coding'623AEGain3.928EU ES AB E11a_E14a100.00
439925.18TRIM44'protein_coding'15AEGain4.2811EU AB IR I2_SR20
4410095.15ANLN'protein_coding'1350AEGain7.6211EU ES AB ER7b44.44
4510135.15RPS10'protein_coding'714AEGain10.276EU ES E4a_E5a40.00
4610175.14BNIP3'protein_coding'16AEGain7.614EU IR I4_AR10.00
4710365.10SDHALP2'protein_coding'930AEGain8.025EU AB ER5a0.00
4810385.10ZP3'protein_coding'818AEGain7.074EU AB ER3b0.00
4910575.06ATP1A3'protein_coding'939AEGain3.159EU ES AB ENST0000044134350.00
5010625.05RUFY3'protein_coding'322AEGain7.001ES E1a_E3a0
5110685.04TOR1AIP1'protein_coding'721AEGain8.532EU E3a_E4a100.00
5210765.03RNF123'protein_coding'1580AEGain9.007EU AB ER19e25.00
5310964.99COX7A2'protein_coding'818AEGain6.754EU ER3e33.33
5411244.94SPRY1'protein_coding'24DEGain30.793EU AB CE SPRY10
5511454.92RAPGEFL1'protein_coding'524AEGain2.744EU AB IR E8_Aa0
5611464.91TMPRSS5'protein_coding'113AEGain6.864EU AB CE I8_AR20
5711474.91FAM92A1'protein_coding'512AEGain16.1925EU ES AB IR CE I7_AR80.00
5811604.89RASA4'protein_coding'427AEGain21.433EU ER11a0.00
5911624.88AL589685.1'pseudogene'13AEGain3.653EU AB ER2a100.00
6011774.85NPDC1'protein_coding'619AEGain6.608EU AB ENST0000049649825.00
6111844.83AC112777.1'rRNA_pseudogene'11DEGain28.540N/AAC112777.1N/A
6211964.82PSMB5'protein_coding'511AEGain20.931AB E1_Ac0
6312074.79SERPINH1'protein_coding'28DEGain27.702EU SERPINH1100.00
6412104.79DDT'protein_coding'715AEGain7.315EU AB ER1a0.00
6512314.77AC094107.1'lincRNA'12AEGain7.051CE I1_AR20
6612324.76PRRT1'protein_coding'1530AEGain2.893EU AB E4_Ab100.00
6712364.76PDE4DIP'protein_coding'30102AEGain4.5035EU ES AB ER15b41.38
6812394.76CAMTA1'protein_coding'1961AEGain2.9419EU AB E6_Da31.25
6912404.76CYP4V2'protein_coding'213AEGain6.403EU AB CE I7_AR30
7012544.74SPAG9'protein_coding'537AEGain6.539EU AB IR I18_AR2100.00
7112714.72SIDT2'protein_coding'432AEGain8.673CE I25_AR10
7212744.71AC119751.8'protein_coding'24DEGain26.240N/AAC119751.8N/A
7312784.71PAX2'protein_coding'822DEGain26.130N/APAX2N/A
7412804.70TMSB15A'protein_coding'13DEGain13.572EU TMSB15A100.00
7512974.68ACADSB'protein_coding'419AEGain7.646EU AB CE E3_Ab0
7613104.65CNPY2'protein_coding'16AEGain16.181I3_SR40
7713204.64FBXW7'protein_coding'416AEGain3.581AB E12_Da0
7813244.63SHOX2'protein_coding'720DEGain24.770N/ASHOX2N/A
7913384.62ZFYVE27'protein_coding'1432AEGain6.003EU CE ER1f0.00
8013614.59DTNA'protein_coding'1541AEGain2.987EU AB E4_Aa20.00
8113644.59DDX12'protein_coding'434AEGain5.884EU CE I5_AR20.00
8213724.58JPH4'protein_coding'311AEGain7.692EU ER7b0.00
8313864.56PSD'protein_coding'935AEGain4.599EU AB IR E10_Aa0.00
8413924.55MDK'protein_coding'1327AEGain9.184EU AB ER4d100.00
8513964.54FNDC5'protein_coding'822AEGain5.714EU AB IR I70
8614044.53SNX14'protein_coding'737AEGain7.393EU ES E15a_E17a50.00
8714164.52CDH6'protein_coding'112DEGain22.954EU CDH650.00
8814194.52snoU13'snoRNA'11DEGain22.920N/AsnoU13N/A
8914214.52KCNIP2'protein_coding'1738AEGain6.4211EU AB IR ENST000002391170.00
9014234.52RPS3A'protein_coding'16AEGain18.226EU E2a_E3a60.00
9114334.51CDK5RAP2'protein_coding'2280AEGain6.2311EU AB E37_Da37.50
9214454.50IGF2BP2'protein_coding'1137DEGain22.560N/AIGF2BP2N/A
9314574.49MAPK8IP3'protein_coding'234AEGain3.814EU ES E8a_E11a66.67
9414584.48HOXC10'protein_coding'12DEGain22.380N/AHOXC10N/A
9514624.48MICA'protein_coding'1224AEGain11.4521EU AB IR E8a_E8b62.50
9614674.48TARBP1'protein_coding'947AEGain6.239EU ES AB E18a_E20a57.14
9714754.47MPRIP'protein_coding'1441AEGain5.1512EU ES AB IR E9_Da50.00
9814794.47RHPN1'protein_coding'219AEGain5.282AB E5_Da0
9915014.44C16orf62'protein_coding'437AEGain4.861I31_SR30
10015034.44PMS2'protein_coding'929AEGain19.365EU AB ER14b0.00
10115094.43POU3F4'protein_coding'11DEGain21.510N/APOU3F4N/A
10215144.42COL5A2'protein_coding'459DEGain21.478EU COL5A20.00
10315164.42RTCD1'protein_coding'521AEGain6.579EU AB IR E12_Da33.33
10415214.41AL645728.3'pseudogene'12AEGain3.532EU ER2a0.00
10515364.40PKD1P6'protein_coding'541AEGain5.5313EU AB CE ER34a37.50
10615414.40EGR1'protein_coding'25DEGain21.052IR EGR10
10715464.39RGS16'protein_coding'15DEGain20.970N/ARGS16N/A
10815494.39UBE2B'protein_coding'16AEGain5.481AB E5_Da0
10915514.39PAAF1'protein_coding'213AEGain13.834EU AB IR I20
11015554.38TXNDC11'protein_coding'423AEGain5.034EU AB ER10a100.00
11115604.38LMO4'protein_coding'411AEGain5.713EU CE I1_AR10
11215684.37PSMB1'protein_coding'311AEGain5.901EU E1a_E2b0
11315694.37ANKRD13D'protein_coding'216AEGain23.042AB I7_SR10
11415704.36MARCH1'protein_coding'27AEGain3.9210EU CE I5_AR850.00
11515754.36METTL7B'protein_coding'23DEGain20.510N/AMETTL7BN/A
11615784.36GDF15'protein_coding'12DEGain20.470N/AGDF15N/A
11715794.35RPL37A'protein_coding'819AEGain5.264EU AB ENST000004465580.00
11815804.35TMEM158'pseudogene'12DEGain20.460N/ATMEM158N/A
11915884.35BAI1'protein_coding'130AEGain6.564EU ES E16a_E18a0.00
12015924.35RPL27A'protein_coding'15AEGain7.195EU AB E3_Aa66.67
12115984.34ZNF429'protein_coding'14AEGain5.652EU CE E1a_E2a0
12215994.34DLGAP1'protein_coding'1128AEGain3.018EU ES AB CE ER3d60.00
12316104.33HAUS5'protein_coding'527AEGain4.962EU CE I9_AR10
12416194.31DUSP6'protein_coding'23DEGain19.890N/ADUSP6N/A
12516304.30GAS2L3'protein_coding'18DEGain19.650N/AGAS2L3N/A
12616384.29IFNAR1'protein_coding'520AEGain12.037EU AB E2a_E3a25.00
12716464.28YPEL5'protein_coding'1327AEGain4.8310EU AB ER3b20.00
12816524.28AL049776.3'lincRNA'14AEGain5.935EU AB E3_Da0
12916534.28MUM1'protein_coding'422AEGain6.9421EU AB IR CE E15_Aa28.57
13016554.28PTX3'protein_coding'13DEGain19.360N/APTX3N/A
13116564.27SRP19'protein_coding'27AEGain6.841EU ER5a0
13216574.27RAPH1'protein_coding'1732AEGain6.313EU AB ER16b0.00
13316764.25TCFL5'protein_coding'27AEGain5.501I4_SR20
13416874.24SPG11'protein_coding'242AEGain5.744EU CE I39_AR20
13516894.24MAP3K1'protein_coding'222DEGain18.903EU AB MAP3K10.00
13617024.23EXOSC10'protein_coding'1147AEGain6.535EU AB IR CE I11_AR10
13717074.22AL138751.1'pseudogene'12AEGain3.482EU ER2a100.00
13817154.21AL589743.2'processed_transcript'826AEGain5.898EU AB E9_Da50.00
13917164.21PCK2'protein_coding'212DEGain18.510N/APCK2N/A
14017194.21GPR162'protein_coding'833AEGain11.4423EU ES AB IR E9a_E11b44.44
14117334.19HOXC9'protein_coding'12DEGain18.220N/AHOXC9N/A
14217344.19AC027763.1'processed_transcript'13AEGain3.322EU AB E2_Aa0
14317394.18TCEAL3'protein_coding'413AEGain5.002EU ER4c0.00
14417414.18ATP5J2'protein_coding'1021AEGain6.366EU AB E5_Aa50.00
14517424.18CCDC91'protein_coding'313AEGain4.781CE I12_AR20
14617464.17NDUFB11'protein_coding'38AEGain7.313EU AB E2_Da100.00
14717484.17E2F7'protein_coding'315DEGain18.030N/AE2F7N/A
14817514.17NDEL1'protein_coding'517AEGain6.102EU ES E9a_E10a0.00
14917524.17DDX19A'protein_coding'315AEGain6.235EU AB E1a_E2a66.67
15017554.16IQWD1'protein_coding'1546AEGain5.711CE I16_AR40
15117574.16HOXC4'protein_coding'26DEGain17.880N/AHOXC4N/A
15217594.16SLC16A4'protein_coding'920AEGain3.764EU AB CE I9_AR3100.00
15317604.16SRGAP3'protein_coding'2065AEGain5.0316EU ES AB IR CE I5_AR133.33
15417634.15ARV1'protein_coding'716AEGain5.494EU AB CE I7_AR10
15517674.15DDX19B'protein_coding'517AEGain5.443EU E2a_E3a50.00
15617684.15COX7B'protein_coding'37AEGain6.1613EU AB IR E3_Da33.33
15717714.15MPDZ'protein_coding'1163AEGain5.062AB E47_Aa0
15817784.14NAPG'protein_coding'112AEGain5.803CE I8_AR30
15917944.12GIT2'protein_coding'924AEGain6.261EU E1a_E2a0
16018014.12RAB18'protein_coding'826AEGain5.887EU ES ER10a50.00
16118034.12FRAS1'protein_coding'584DEGain17.370N/AFRAS1N/A
16218174.11GRIA2'protein_coding'829AEGain4.9810EU ES AB IR CE E9_Db0.00
16318274.09C6orf130'protein_coding'1640AEGain3.904EU AB E5_Ab100.00
16418294.09P2RX6'protein_coding'1132AEGain4.801EU ER1k0
16518334.09INPP5F'protein_coding'631AEGain2.648EU AB ER5e33.33
16618354.09PPIC'protein_coding'27DEGain17.030N/APPICN/A
16718534.08LMTK3'protein_coding'116AEGain4.342EU AB E3_Aa0
16818554.08TGIF1'protein_coding'1016DEGain16.910N/ATGIF1N/A
16918564.08HECTD2'protein_coding'739AEGain5.002EU ER10b0.00
17018634.07HOXC6'protein_coding'34DEGain16.800N/AHOXC6N/A
17118704.06AP000872.1'protein_coding'333DEGain16.690N/AAP000872.1N/A
17218784.05RIC8B'protein_coding'1028AEGain10.042AB I16_SR40
17318884.04HAP1'protein_coding'719AEGain4.483EU ES E7a_E8a50.00
17418904.04DHRS4'protein_coding'716AEGain9.703EU ES CE I1_AR20.00
17518944.04MAPKAP1'protein_coding'2350AEGain4.483EU AB E19a_E20a0.00
17618954.04NEUROD4'protein_coding'12DEGain16.420N/ANEUROD4N/A
17719034.03PPP2R2D'protein_coding'821AEGain3.614EU ER1b33.33
17819054.03MFF'protein_coding'2456AEGain5.5720EU ES AB E3_Ad41.67
17919104.03PKIG'protein_coding'916AEGain2.492EU AB ER9a0
18019124.02C20orf111'protein_coding'27AEGain9.425EU CE ER3a50.00
18119134.02PPP3CA'protein_coding'420AEGain2.836EU ES CE I1_AR750.00
18219184.02PREPL'protein_coding'1542AEGain2.455EU AB I15_SR10.00
18319214.02TRIB2'protein_coding'48DEGain16.181EU TRIB20
18419234.01NT5C2'protein_coding'1641AEGain4.709EU AB CE E16a_E17a0.00
18519294.01PPP1R12C'protein_coding'425AEGain3.072EU AB E14_Db0
18619324.01AASDH'protein_coding'317AEGain10.873EU E2a_E3a0.00
18719354.00NMT2'protein_coding'933AEGain4.112EU AB E16_Aa0
18819404.00CLEC2D'protein_coding'1330AEGain5.655EU AB E8a_E8b0.00
18919444.00CHID1'protein_coding'722AEGain3.574EU ES AB E10a_E12a100.00
19019464.00PPP3CB'protein_coding'826AEGain3.946EU ES AB ENST0000039482866.67
19119494.00DPY19L2P2'protein_coding'839AEGain4.851EU ER1b0
19219513.99PSMF1'protein_coding'1225AEGain5.475EU AB E2_Ac33.33
19319543.99RPL35'protein_coding'513AEGain6.283EU ES AB E1b_E2a0.00
19419563.99SLC9A9'protein_coding'732AEGain6.663EU AB ER3a100.00
19519583.99GATM'protein_coding'313AEGain3.561AB E9_Da0
19619593.99MAPK9'protein_coding'719AEGain2.984EU ES AB E7_Aa100.00
19719613.98BMPR1B'protein_coding'317AEGain4.552EU ER3a0.00
19819633.98SFRS1'protein_coding'25AEGain6.1810EU AB IR I2_AR10
19919703.98NBPF1'protein_coding'747AEGain6.015EU AB E8_Aa0.00
20019713.98VPS41'protein_coding'1457AEGain5.202EU AB E28_Da0
20119723.98FAM131A'protein_coding'1025AEGain4.729EU ES AB E3a_E5d75.00
20219933.97DRD2'protein_coding'39DEGain15.630N/ADRD2N/A
20319963.96HMGA2'protein_coding'510DEGain15.600N/AHMGA2N/A
20420003.96NARS'protein_coding'315AEGain4.472EU E2a_E3a100.00
20520073.95DDX1'protein_coding'636AEGain3.755EU E4a_E5a25.00
20620173.94C14orf159'protein_coding'921AEGain5.066EU CE E7a_E8a50.00
20720193.94ANKRD28'protein_coding'1758AEGain4.854EU I11_SR30.00
20820253.93ZIC3'protein_coding'37DEGain15.270N/AZIC3N/A
20920283.93CDC2'protein_coding'919DEGain15.252EU AB CDC20
21020303.93BRCA1'protein_coding'3365AEGain17.1428EU AB ER21a50.00
21120373.93FBLIM1'protein_coding'1026AEGain3.6715EU AB E5_Da41.67
21220393.92CCDC94'protein_coding'18AEGain5.512EU E2a_E3a0.00
21320493.92KIAA1310'protein_coding'2465AEGain6.1112EU ES AB CE E22a_E24b40.00
21420533.91UBFD1'protein_coding'29AEGain5.601CE I3_AR10
21520543.91CENPF'protein_coding'629DEGain15.050N/ACENPFN/A
21620623.91AC005779.1'pseudogene'14AEGain4.431EU ER3a0
21720653.90DNAJB6'protein_coding'2257AEGain5.317EU AB ER13a0.00
21820673.90SEC31A'protein_coding'1042AEGain16.909EU ES AB CE ER28a20.00
21920733.90SAT1'protein_coding'1028AEGain2.075EU AB IR E1_Ad100.00
22020743.90C7orf50'protein_coding'1022AEGain4.604EU AB ER1e100.00
22120753.89VPS33A'protein_coding'113AEGain4.012EU E2a_E3a100.00
22220783.89CCDC117'protein_coding'718AEGain6.435EU AB ER1f100.00
22320803.89ATP6V1C1'protein_coding'216AEGain5.392EU AB E2_Ab0
22420813.88LRP11'protein_coding'412AEGain3.251AB E5_Aa0
22520833.88SIN3B'protein_coding'220AEGain5.402EU E10a_E11a0.00
22620863.88IVD'protein_coding'1132AEGain4.433EU E1a_E2a0.00
22720873.88OXR1'protein_coding'1131AEGain4.671ES ENST000004497620
22820883.88JAM2'protein_coding'1123AEGain3.907EU AB E9b_E10c40.00
22920893.88AC116340.1'rRNA_pseudogene'11DEGain14.720N/AAC116340.1N/A
23020953.87SESN3'protein_coding'312DEGain14.650N/ASESN3N/A
23121063.86UBE2L3'protein_coding'48AEGain5.502EU ES E3a_E6a0.00
23221123.85OTUD7B'protein_coding'318AEGain4.483EU E3a_E4b0.00
23321133.85TSPAN12'protein_coding'720DEGain14.411EU TSPAN120
23421193.85FLOT1'protein_coding'1639AEGain4.353ES AB ENST000004565730
23521213.84NDUFV2'protein_coding'721AEGain5.1718EU AB IR E2_Da16.67
23621233.84ZNF10'protein_coding'519AEGain8.825EU AB CE I10_AR30.00
23721273.84SDR39U1'protein_coding'39AEGain5.656EU AB E5a_E6a50.00
23821313.84IMPA1'protein_coding'310AEGain3.901AB E3_Aa0
23921383.83SUCLA2'protein_coding'1233AEGain6.175EU ER2b75.00
24021403.83AL353658.1'protein_coding'12DEGain14.230N/AAL353658.1N/A
24121423.83STAG3'protein_coding'2585AEGain5.0648EU AB IR E9b_E10a29.63
24221433.83PMP2'protein_coding'14AEGain10.954EU E1a_E2a66.67
24321473.83GNAS'protein_coding'6199AEGain5.438EU ES AB E9c_E13d50.00
24421483.82C16orf80'protein_coding'16AEGain4.301AB E5_Aa0
24521533.82KLHL13'protein_coding'716DEGain14.141EU KLHL130
24621563.82TMEM150A'protein_coding'1233AEGain5.491CE I8_AR10
24721583.82RPS14'protein_coding'38AEGain5.382EU E2a_E3a0.00
24821613.82APBB3'protein_coding'823AEGain4.414EU AB E1_Da0.00
24921623.81WASH1'protein_coding'318AEGain8.702EU ER11b0
25021633.81AC004540.2'processed_transcript'24DEGain14.060N/AAC004540.2N/A
25121673.81C21orf2'protein_coding'822AEGain4.688EU ES AB ER2b16.67


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1116.95C19orf29'protein_coding'422AELoss-491.176EU AB E4_Aa100.00
2216.53AASS'protein_coding'739AELoss-609.266EU AB IR E24_Dc0
3316.13AP000692.1'processed_transcript'12AELoss-1720.533EU AB E1a_E2a0
4415.35CHEK2'protein_coding'3065AELoss-748.2939EU ES AB IR E11b_E23b51.72
5515.33MAP2K2'protein_coding'826AELoss-319.004EU AB E7a_E7c100.00
6614.98ST3GAL5'protein_coding'1535AELoss-291.857EU AB E17_Aa0
7714.80MSH5'protein_coding'2878AELoss-816.6744EU ES AB CE E15a_E16a35.29
8814.75PANK1'protein_coding'720AELoss-247.364EU AB E4_Da100.00
9914.73AIFM1'protein_coding'624AELoss-564.666EU ES AB E11_Aa0.00
101013.77FAM116A'protein_coding'938AELoss-428.225EU AB E21_Ab0.00
111113.61AC133435.2'lincRNA'12AELoss-4386.193EU AB E1a_E2a0
121213.47AC128648.1'protein_coding'18AELoss-1055.896EU AB E2a_E3a100.00
131313.24MLL3'protein_coding'1899AELoss-395.9811EU AB CE E62a_E63a0.00
141413.08FARP1'protein_coding'839AELoss-412.6615EU AB IR E20_Aa0
151512.93RWDD2B'protein_coding'718AELoss-213.9710EU ES AB E2_Da40.00
161612.89ZNF283'protein_coding'942AELoss-292.3417EU ES AB CE E17_Db25.00
171712.50AC005197.3'protein_coding'12AELoss-214.802AB E1_Da0
181812.42AKT2'protein_coding'2672AELoss-172.0211EU ES AB E9_Aa0.00
191912.40AC034193.2'lincRNA'12AELoss-207.192AB E1_Da0
202012.39C7orf44'protein_coding'2047AELoss-279.6513EU ES AB IR E11_Df25.00
212112.35MRPS18B'protein_coding'513AELoss-217.012EU AB E2_Dd0
222212.21DHTKD1'protein_coding'627AELoss-180.712AB E16_Db0
232312.14MORC2'protein_coding'638AELoss-136.612AB E2_Da0
242412.12SLC25A17'protein_coding'1644AELoss-174.495AB E3_Da0
252512.12MED24'protein_coding'1350AELoss-250.059EU AB E2_Aa50.00
262612.01AC012652.5'lincRNA'13AELoss-453.123EU AB E2a_E3a100.00
272711.97ZNF684'protein_coding'614AELoss-227.694EU AB E5_Ab0
282811.95RP1-12G14.4'pseudogene'22AELoss-1002.112AB E1_Ab0
292911.84AC079316.2'lincRNA'12AELoss-151.092AB E1_Da0
303011.67SLC25A15'protein_coding'720AELoss-154.134EU AB CE E9_Aa0
313111.63KIAA1704'protein_coding'824AELoss-191.8414EU AB E13_Aa20.00
323211.57DOCK4'protein_coding'2187AELoss-207.326EU AB CE E51_Aa0.00
333311.37GTPBP5'protein_coding'1330AELoss-571.9127EU ES AB E3_Db40.00
343411.33OGT'protein_coding'1246AELoss-161.4610EU ES AB E4_Da0.00
353511.25ZNF425'protein_coding'512AELoss-147.232AB E5_Ab0
363611.22TNRC18'protein_coding'1565AELoss-73.519EU ES AB E25_Da0.00
373711.14ELK4'protein_coding'38AELoss-92.641AB E2_Da0
383811.07MMADHC'protein_coding'621AELoss-161.245EU ES AB E8_Da50.00
393910.97FIS1'protein_coding'919AELoss-711.616EU ES AB E5_Aa50.00
404010.94PHC3'protein_coding'2459AELoss-124.0315EU AB E6_Da0.00
414110.83KCNQ2'protein_coding'1532AELoss-70.0516EU AB CE ER11a33.33
424210.79CHN2'protein_coding'2664AELoss-115.0328EU ES AB E7_Aa30.00
434310.77ACTA2'protein_coding'717AELoss-86.302EU AB E4_Db0
444410.70AC087742.1'lincRNA'16AELoss-248.318EU AB IR E1a_E2a100.00
454510.65SEPT2'protein_coding'47102AELoss-458.257EU ES AB E12_Da0.00
464610.65C10orf18'protein_coding'1239AELoss-92.7611EU AB E23_Db14.29
474710.62POLR2B'protein_coding'1347AELoss-98.326EU AB E3_Ab0
484810.61TMEM104'protein_coding'213AELoss-93.851AB E3_Da0
494910.59HMGB1'protein_coding'1227AELoss-132.9513EU ES AB E6b_E7b33.33
505010.57CYB561D1'protein_coding'815AELoss-546.153EU AB E2_Db0
515110.54AC007216.1'pseudogene'13AELoss-448.025EU AB E2a_E3a0.00
525310.49SON'protein_coding'2558AELoss-88.2710EU AB E3_Da20.00
535410.46DHX40'protein_coding'325AELoss-94.954EU AB E10_Aa0
545510.45VGLL4'protein_coding'1843AELoss-70.6914EU ES AB E10_Aa50.00
555610.44PRPF3'protein_coding'829AELoss-488.187EU AB IR E14_Aa0
565710.42DHX34'protein_coding'633AELoss-375.021AB E15_Aa0
575810.40FAM45A'protein_coding'1130AELoss-342.509EU ES AB E11b_E12a25.00
585910.39AMT'protein_coding'2554AELoss-70.125EU AB E2_Aa0.00
596010.31NDUFS2'protein_coding'1545AELoss-62.526EU AB E13_Aa0
606110.28CBS'protein_coding'1848AELoss-51.886EU AB E4_Aa0.00
616310.23CHCHD2'protein_coding'26AELoss-112.363EU AB E1_Ab0
626410.23PDHB'protein_coding'1034AELoss-106.578EU AB E1_Dg40.00
636510.13TAF13'protein_coding'27AELoss-83.443EU AB E5_Aa0
646610.12RPL7A'protein_coding'1127AELoss-85.876EU AB IR E2_Ab0.00
656710.11CD46'protein_coding'2736AELoss-65.523AB E5_Ae0
666810.07GFPT1'protein_coding'530AELoss-46.403EU AB E3_Da0
676910.04CNOT10'protein_coding'1952AELoss-272.7619EU AB E21_Ab27.27
687010.02MLLT6'protein_coding'1038AELoss-406.363EU AB E13_Db0.00
697110.00ING4'protein_coding'2346AELoss-300.536EU ES AB E4_Aa50.00
70729.98IDH1'protein_coding'1338AELoss-33.967EU ES AB CE E2_Aa100.00
71739.95AC007620.1'processed_transcript'12AELoss-71.201AB E1_Da0
72749.87MKRN1'protein_coding'1644AELoss-85.236EU AB E9_Aa0.00
73759.82ETV5'protein_coding'1439AELoss-40.584AB E8_Db0
74769.78AC130686.3'protein_coding'517AELoss-63.2018EU AB IR E9_Db58.33
75779.78RETSAT'protein_coding'1030AELoss-83.474EU AB E6_Da0
76789.78RNF121'protein_coding'418AELoss-46.741AB E4_Aa0
77799.75ZNF3'protein_coding'1639AELoss-68.778EU AB E4_Dc0.00
78809.70XXyac-R12DG2.3'protein_coding'416AELoss-131.889EU AB CE E2_Aa100.00
79819.70CDC16'protein_coding'1237AELoss-57.4511EU AB IR CE E18_Aa50.00
80829.69CC2D1A'protein_coding'535AELoss-56.573AB E24_Aa0
81839.67PPIL2'protein_coding'1658AELoss-27.1220EU AB IR E8_Da14.29
82849.66RABGEF1'protein_coding'1028AELoss-64.787EU AB E9a_E10a0.00
83859.65ACSS2'protein_coding'2770AELoss-36.6718EU AB IR E9_Aa50.00
84869.65FTSJ2'protein_coding'614AELoss-57.931AB E5_Da0
85879.61TAPBPL'protein_coding'218AELoss-231.949EU AB E14a_E15a0.00
86889.61SNRNP35'protein_coding'513AELoss-78.577EU ES AB E5_Ad0.00
87899.58TOP3A'protein_coding'835AELoss-31.065EU AB E19_Db100.00
88909.58PSIP1'protein_coding'1134AELoss-78.0613EU AB IR E9a_E10a25.00
89919.56ARIH2'protein_coding'3576AELoss-76.3136EU AB E5_Dd35.71
90929.54NOP14'protein_coding'323AELoss-64.032EU AB E19_Aa0
91939.54CRTC2'protein_coding'933AELoss-218.253EU AB E8_Aa0.00
92949.51MTRF1'protein_coding'1133AELoss-66.296EU ES AB E6_Da50.00
93959.51MTA1'protein_coding'1954AELoss-54.355EU ES AB E10_Da0.00
94969.49C7orf46'protein_coding'821AELoss-306.224EU AB E3_Da0.00
95979.49ANO10'protein_coding'1952AELoss-71.048EU AB E4_Ab25.00
96989.46C17orf45'protein_coding'2044AELoss-23.2125EU AB ER2j60.00
97999.45GNL3L'protein_coding'530AELoss-101.628EU AB E19e_E19d66.67
981009.43AC073940.1'pseudogene'12AELoss-157.204EU AB E2_Aa100.00
991019.43PHACTR4'protein_coding'729AELoss-242.207EU AB E19_Dc25.00
1001029.40MAP3K7IP2'protein_coding'619AELoss-201.222AB E5_Aa0
1011039.37KIAA1033'protein_coding'234AELoss-39.437EU AB CE E25_Da0.00
1021049.35AGRN'protein_coding'1054AELoss-56.963EU AB E25_Aa0
1031059.34CYP20A1'protein_coding'1443AELoss-137.9710EU ES AB CE E7a_E10a60.00
1041069.32AL138795.6'protein_coding'212AELoss-224.1710EU AB E8_Da0
1051079.32EIF2B3'protein_coding'1131AELoss-69.0810EU ES AB E8_Db33.33
1061089.32AC004540.1'processed_transcript'822AELoss-26.469EU ES AB E6_Da33.33
1071099.32DUS4L'protein_coding'1330AELoss-38.224EU AB E7_Dc100.00
1081109.30AKR1B1'protein_coding'1641AELoss-221.033EU AB E5_Ab0
1091119.29EIF2B4'protein_coding'1136AELoss-64.9613EU AB E2_Dn71.43
1101129.26PARP1'protein_coding'1042AELoss-30.674EU AB ER24c100.00
1111139.25POLM'protein_coding'2049AELoss-43.366EU AB E6_Ab33.33
1121149.24VCAN'protein_coding'518AELoss-44.187EU AB CE E13a_E14a0.00
1131159.24ATL2'protein_coding'1744AELoss-65.0916EU AB IR E4_Da20.00
1141169.22SEC63'protein_coding'1244AELoss-63.926EU AB E11_Aa0.00
1151179.20HBEGF'protein_coding'310AELoss-269.351AB E5_Aa0
1161189.19MLC1'protein_coding'722AELoss-62.815EU ES E7a_E9a0.00
1171199.19DBR1'protein_coding'414AELoss-60.692EU AB E4_Da0
1181209.19PSME4'protein_coding'1369AELoss-43.3210EU AB CE E10_Aa16.67
1191219.19POLR2H'protein_coding'1433AELoss-47.406EU AB E6_Aa0.00
1201229.17EIF3L'protein_coding'1642AELoss-36.411AB E2_Da0
1211239.15SLC2A11'protein_coding'3070AELoss-97.6211EU AB E13_Df50.00
1221249.15POLR3H'protein_coding'1026AELoss-124.593EU AB E3_Db100.00
1231259.15PQLC2'protein_coding'923AELoss-187.412EU AB E10_Aa0
1241269.14WDR32'protein_coding'514AELoss-50.871AB E8_Db0
1251279.10KDELC2'protein_coding'311AELoss-37.373EU AB E7_Da0
1261289.08AIMP2'protein_coding'412AELoss-41.891AB E3_Aa0
1271299.08SF3A3'protein_coding'932AELoss-26.594EU AB E15_Aa100.00
1281309.07FAM73A'protein_coding'422AELoss-282.973EU AB E10f_E11a0
1291319.04MSH6'protein_coding'822AELoss-37.843AB E5_Da0
1301329.04COPS7B'protein_coding'2247AELoss-150.667EU AB E4_Ae50.00
1311339.02KLHDC8A'protein_coding'414AELoss-7.695EU AB E9_Da50.00
1321349.00LZTS2'protein_coding'923AELoss-32.965EU AB IR E7_Aa0
1331358.99ALG3'protein_coding'1638AELoss-38.954EU AB E5_Df0
1341368.96RANBP2'protein_coding'1149AELoss-189.884EU AB E13_Dc0.00
1351378.93TOP2A'protein_coding'557AELoss-10.038EU AB E15_Da25.00
1361388.93CCNL2'protein_coding'2158AELoss-36.857EU AB E9_Da0.00
1371398.89ABHD14A'protein_coding'1140AELoss-232.862AB E5_Ab0
1381408.89AFG3L1'processed_transcript'1841AELoss-143.615EU AB E2_Dc0
1391418.88C9orf80'protein_coding'720AELoss-177.707EU AB E3_Db0.00
1401428.87RAB3GAP2'protein_coding'1155AELoss-36.444EU AB CE E37_Aa0
1411438.87VHL'protein_coding'512AELoss-27.694EU ES AB E2_Aa0.00
1421448.81RP11-3J10.3'pseudogene'23AELoss-49.922EU AB ENST000003965190
1431458.79AC009065.2'lincRNA'12AELoss-159.983EU AB E1a_E2a0
1441468.78H6PD'protein_coding'27AELoss-196.274EU AB E5_Ac0.00
1451478.77RPL23A'protein_coding'718AELoss-21.3121EU ES AB IR CE E4a_E5b40.00
1461488.76CTD-2124B20.1'protein_coding'23AELoss-29.632AB E1_Db0
1471498.71WNK1'protein_coding'431AELoss-31.376EU E28a_E29a40.00
1481508.71TRIM22'protein_coding'1233AELoss-31.3312EU AB E9_Da42.86
1491518.71ZNF445'protein_coding'730AELoss-40.404EU AB CE E2_Da0
1501528.69AGAP2'protein_coding'220AELoss-61.216EU ES IR E15a_E16a100.00
1511538.68FKBP11'protein_coding'38AELoss-33.161AB E7_Da0
1521548.65HN1'protein_coding'1224AELoss-26.115EU ES AB E5_Da0.00
1531558.63AC004447.1'lincRNA'12AELoss-146.102EU AB E1a_E2a0
1541568.63AL589863.1'pseudogene'13AELoss-37.872AB E2_Aa0
1551578.63AC133555.1'protein_coding'14AELoss-268.874EU AB E3a_E4a0
1561588.61FUS'protein_coding'1236AELoss-45.8710EU AB E6a_E7b0.00
1571598.61HLA-B'protein_coding'1029AELoss-32.639EU AB E1f_E1o25.00
1581608.60AC138409.3'protein_coding'28AELoss-155.3111EU AB IR E5a_E6a33.33
1591618.60AL590714.1'protein_coding'15AELoss-95.436EU AB IR CE E1a_E2a100.00
1601628.60ARMC10'protein_coding'1024AELoss-149.245EU ES AB E9_Aa0.00
1611638.59EEF1A1'protein_coding'1131AELoss-144.1216EU AB ER6a25.00
1621648.57AC010323.2'lincRNA'12AELoss-209.943EU AB E1a_E2a0
1631658.56XPO1'protein_coding'3188AELoss-27.009EU AB E6_Aa0.00
1641668.56AL671710.1'lincRNA'15AELoss-27.084EU ES AB E1a_E5a100.00
1651678.55NDUFB5'protein_coding'1640AELoss-37.4714EU ES AB E7_Aa71.43
1661688.55YIF1B'protein_coding'513AELoss-26.862EU AB E9_Da0
1671698.54CROCCL1'processed_transcript'420AELoss-158.776EU AB IR E11_Db0
1681708.54TRAPPC2'protein_coding'819AELoss-132.705EU AB E5a_E5b0.00
1691718.54DHCR24'protein_coding'212AELoss-36.852EU AB E6a_E7a0
1701728.52TFRC'protein_coding'1546AELoss-17.716EU AB E16_Aa0.00
1711738.51AC007308.1'processed_transcript'12AELoss-198.052EU AB E1a_E2a0
1721748.49ZNF791'protein_coding'410AELoss-32.352EU AB E5_Dd0
1731758.47SLC27A1'protein_coding'418AELoss-27.843AB E8_Aa0
1741768.47RP11-179H18.3'processed_transcript'12AELoss-138.011AB E1_Da0
1751778.46CNN3'protein_coding'617AELoss-43.073AB E3_Aa0
1761788.46ARFGAP3'protein_coding'1228AELoss-36.716EU AB E2_Da0.00
1771798.45FNBP1'protein_coding'1643AELoss-112.7512EU ES AB IR CE E17a_E24b0.00
1781808.43AC121253.1'protein_coding'46AELoss-33.943AB E1_Dd0
1791818.42LIMK1'protein_coding'931AELoss-160.663EU AB E16_Aa0
1801828.38GPR17'protein_coding'713DELoss-332.680N/AGPR17N/A
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