Summary page for comparison: 'OLG01_TIC_vs_OLG02_PRI' (HS0709_vs_HS1083) - Project: Oligo


Download complete candidate list as tab delimited text file: OLG01_TIC_vs_OLG02_PRI.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 9,725 (of 49,867 possible genes)

DE Genes: 3,113

AE Genes: 7,746

Alternative Exon Usage (EU) Genes: 6,414

Alernative Exon Skipping (ES) Genes: 1,344

Alternative Exon Boundary (AB) Genes: 3,920

Intron Retention (IR) Genes: 500

Cryptic Exon (CE) Genes: 817


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.51C7orf46'protein_coding'821AELoss-160.8922EU ES AB IR E3_Da57.14
2214.48AP000692.1'processed_transcript'12AELoss-546.823EU AB E1a_E2a0
3314.27AASS'protein_coding'739AELoss-289.289EU AB IR CE E24_Dc50.00
4413.90CHEK2'protein_coding'3065AELoss-404.4012EU ES AB E11b_E23b33.33
5513.85RP1-12G14.4'pseudogene'22AELoss-2495.362AB E1_Ab0
6613.59AC133435.2'lincRNA'12AELoss-2177.723EU AB E1a_E2a0
7713.56ST3GAL5'protein_coding'1535AELoss-205.855EU AB E17_Aa0.00
8813.18GTPBP5'protein_coding'1330AELoss-393.2425EU ES AB E3_Db47.37
9913.15C19orf29'protein_coding'422AELoss-292.6511EU AB E4_Aa50.00
101013.06AIFM1'protein_coding'624AELoss-227.642EU AB E11_Aa0
111112.66AC007216.1'pseudogene'13AELoss-283.075EU AB E2a_E3a0.00
121212.65MORC2'protein_coding'638AELoss-97.604EU ES AB E2_Da100.00
131312.55SLC25A15'protein_coding'720AELoss-122.902EU AB E9_Aa0
141412.35FAM116A'protein_coding'938AELoss-223.895EU ES AB CE E21_Ab0.00
151512.25PQLC2'protein_coding'923AELoss-96.015EU AB E10_Aa66.67
161612.23ZNF283'protein_coding'942AELoss-187.3011EU ES AB CE E17_Db0.00
171712.03RPS29'protein_coding'24AEGain484.864EU ES E2a_E3a100.00
181811.84RPS10'protein_coding'714AEGain106.857EU ES E4a_E5a50.00
191911.79LIMK1'protein_coding'931AELoss-98.995EU AB E16_Aa50.00
202011.59CYB561D1'protein_coding'815AELoss-176.962AB E2_Db0
212111.52TMEM104'protein_coding'213AELoss-61.855EU ES AB CE E3_Da100.00
222211.39DOCK4'protein_coding'2187AELoss-127.732AB E51_Aa0
232311.26C17orf45'protein_coding'2044AELoss-351.6920EU AB ER2j50.00
242411.22CHCHD2'protein_coding'26AELoss-200.134EU AB E1_Ab100.00
252511.13AC128648.1'protein_coding'18AELoss-576.907EU AB E2a_E3a66.67
262611.13MLL3'protein_coding'1899AELoss-162.0515EU AB IR CE E62a_E63a66.67
272711.04AKT2'protein_coding'2672AELoss-67.4514EU ES AB E9_Aa0.00
282811.02FIS1'protein_coding'919AELoss-513.656EU ES AB E5_Aa33.33
292910.90SLC25A17'protein_coding'1644AELoss-124.076EU AB CE E3_Da50.00
303010.90MAP2K2'protein_coding'826AELoss-126.964EU AB E7a_E7c50.00
313110.86AC034193.2'lincRNA'12AELoss-95.012AB E1_Da0
323210.84AC005197.3'protein_coding'12AELoss-120.222AB E1_Da0
333310.83EIF4A2'protein_coding'2961AELoss-115.6416EU AB E2_Dg33.33
343410.75RWDD2B'protein_coding'718AELoss-88.256EU ES AB E2_Da50.00
353510.73C9orf80'protein_coding'720AELoss-116.5510EU ES AB E3_Db50.00
363610.69STRBP'protein_coding'1042AELoss-100.834EU AB E2_Aa0
373710.64PHACTR4'protein_coding'729AELoss-119.108EU ES AB E19_Dc40.00
383810.64OGT'protein_coding'1246AELoss-92.416EU AB E4_Da0.00
393910.64PTPRZ1'protein_coding'1255AELoss-76.8411EU ES AB E16_Ad16.67
404010.63DHTKD1'protein_coding'627AELoss-121.943EU AB E16_Db0
414110.63AL356970.1'pseudogene'12AELoss-54.813EU AB E1a_E2a0
424210.62PANK1'protein_coding'720AELoss-74.982EU AB E4_Da0
434310.61C21orf58'protein_coding'1331AELoss-100.284EU AB E9_Dd0
444410.56AL138795.6'protein_coding'212AELoss-77.839EU AB E8_Da0
454510.53FAM73A'protein_coding'422AELoss-107.9710EU ES AB E10f_E11a42.86
464610.50MSH5'protein_coding'2878AELoss-383.8814EU ES AB CE E15a_E16a33.33
474710.48RPS26'protein_coding'14AEGain6.298EU AB E2_Da100.00
484810.46RPS3A'protein_coding'16AEGain381.598EU ES ER2a71.43
494910.41NMNAT1'protein_coding'615AELoss-47.1912EU AB ENST0000046268675.00
505010.38HNRNPA1'protein_coding'314AEGain82.828EU E2a_E3a57.14
515110.37RPL37'protein_coding'28AEGain109.734EU ER3a0.00
525210.37ELK4'protein_coding'38AELoss-81.991AB E2_Da0
535310.35CEP55'protein_coding'519AELoss-89.751AB E8_Dd0
545410.32IDH1'protein_coding'1338AELoss-27.7210EU ES AB CE E2_Aa75.00
555510.32CHN2'protein_coding'2664AELoss-72.3640EU ES AB E7_Aa48.28
565610.22PHC3'protein_coding'2459AELoss-84.6911EU ES AB E6_Da25.00
575710.19RP5-826L7.1'processed_transcript'12AELoss-92.463EU AB E2_Aa0
585810.18SNRNP25'protein_coding'719AELoss-82.008EU AB E2_Aa60.00
595910.17CXorf57'protein_coding'726AELoss-58.933AB E9_Aa0
606010.08AC087742.1'lincRNA'16AELoss-112.858EU AB IR E1a_E2a100.00
616110.08MKRN1'protein_coding'1644AELoss-52.967EU ES AB E9_Aa100.00
626210.03MDM2'protein_coding'2236AELoss-32.985EU AB ER14c100.00
636310.03FARP1'protein_coding'839AELoss-261.063EU AB E20_Aa0
646410.03RP11-179H18.3'processed_transcript'12AELoss-98.451AB E1_Da0
656510.02AC118282.2'protein_coding'24AELoss-5.563EU AB E1a_E2b100.00
66669.97RPL37A'protein_coding'819AEGain49.634EU E1c_E1j33.33
67679.94CROCCL1'processed_transcript'420AELoss-94.825EU ES AB E11_Db0.00
68689.90THOC7'protein_coding'822AELoss-44.564EU AB E2_Aa100.00
69699.89AC121253.1'protein_coding'46AELoss-53.904EU AB E1_Dd0
70709.86SLC2A11'protein_coding'3070AELoss-78.6218EU ES AB E13_Df50.00
71719.86TOP2A'protein_coding'557AELoss-40.219EU AB E19_Da20.00
72729.72C10orf18'protein_coding'1239AELoss-72.7312EU AB E23_Db33.33
73739.69NHP2L1'protein_coding'1022AELoss-39.444EU AB E8_Dc100.00
74749.69ZNF425'protein_coding'512AELoss-75.783EU AB E5_Ab0
75759.69PRPF3'protein_coding'829AELoss-350.892AB E14_Aa0
76769.66RPL23A'protein_coding'718AELoss-26.7517EU ES AB IR CE E1a_E4b28.57
77779.64RPS27'protein_coding'410AEGain25.165EU E2a_E2b25.00
78789.64CD46'protein_coding'2736AELoss-37.739EU AB E5_Ae25.00
79799.60ACTA2'protein_coding'717AELoss-59.114EU AB E4_Db50.00
80809.55TNRC18'protein_coding'1565AELoss-39.778EU AB E25_Da0
81819.55AC012652.5'lincRNA'13AELoss-224.612EU AB E2a_E3a0
82829.55AL136180.1'protein_coding'12AELoss-73.851AB E2_Aa0
83839.52NUDT1'protein_coding'1320AELoss-46.693EU ES AB E4_Da100.00
84849.51ARMC10'protein_coding'1024AELoss-86.6310EU AB E9_Aa100.00
85859.48TTF2'protein_coding'841AELoss-54.276EU AB E11_Aa50.00
86869.48C1orf151'protein_coding'1128AELoss-52.1517EU AB IR E3_Aa57.14
87879.47MLC1'protein_coding'722AELoss-59.066EU ES E7a_E9a20.00
88889.44CDC16'protein_coding'1237AELoss-52.486EU AB E18_Aa66.67
89899.43TAF13'protein_coding'27AELoss-42.035EU AB E5_Aa50.00
90909.42DHX34'protein_coding'633AELoss-195.811AB E15_Aa0
91919.39HNRNPC'protein_coding'818AELoss-72.319EU ES AB E2_Da25.00
92929.37MRPS18B'protein_coding'513AELoss-92.095EU AB E2_Dd33.33
93939.37KIAA1704'protein_coding'824AELoss-54.789EU ES AB E13_Aa0.00
94949.36TMEM111'protein_coding'517AELoss-68.563EU AB E2_Aa0
95959.35SEPT2'protein_coding'47102AELoss-348.625EU ES AB E12_Da50.00
96969.34MLLT6'protein_coding'1038AELoss-249.652AB E13_Db0
97979.34FAT3'protein_coding'534AELoss-3.708EU ES AB E3_Aa66.67
98989.34VCAN'protein_coding'518AELoss-53.1911EU AB IR CE E13a_E14a0
99999.25C22orf25'protein_coding'2757AELoss-50.5911EU AB E6_Db20.00
1001009.23HMGN1'protein_coding'2146AELoss-39.377EU AB ER5j0.00
1011019.22SEPT7'protein_coding'1433AELoss-44.694EU ES AB E1b_E5a50.00
1021029.22AC100786.1'protein_coding'26AEGain40.425EU E3a_E4a50.00
1031039.21PDHB'protein_coding'1034AELoss-49.576EU AB E1_Dg33.33
1041049.17CD74'protein_coding'310DELoss-574.150N/ACD74N/A
1051059.16AC010733.5'processed_transcript'12AELoss-63.501AB E2_Aa0
1061069.14RNF121'protein_coding'418AELoss-37.843EU AB E4_Aa0.00
1071079.10P4HB'protein_coding'1541AELoss-35.237EU ES AB E8a_E8c0.00
1081089.09CHCHD9'protein_coding'22AELoss-52.711AB E1_Da0
1091099.08C4orf36'protein_coding'313AELoss-50.353AB E9_Dc0
1101109.05NDUFS2'protein_coding'1545AELoss-47.139EU ES AB E13_Aa25.00
1111119.03ANO10'protein_coding'1952AELoss-59.9015EU ES AB E4_Ab40.00
1121128.99AIMP2'protein_coding'412AELoss-33.713EU ES AB E3_Aa100.00
1131138.98RPL9'protein_coding'312AEGain38.649EU AB E3a_E4a57.14
1141148.97RPL7A'protein_coding'1127AELoss-230.368EU AB E2_Ab16.67
1151158.96AC004540.1'processed_transcript'822AELoss-22.707EU AB E6_Da50.00
1161168.94AC007620.1'processed_transcript'12AELoss-60.651AB E1_Da0
1171178.94RP11-3J10.3'pseudogene'23AELoss-61.542EU AB ENST000003965190
1181188.92CNOT10'protein_coding'1952AELoss-170.5314EU ES AB E21_Ab16.67
1191198.91PSIP1'protein_coding'1134AELoss-38.371EU E9a_E10a0
1201208.90RPL13A'protein_coding'1235AEGain40.2315EU AB E2c_E2e50.00
1211218.88GPR17'protein_coding'713DELoss-469.620N/AGPR17N/A
1221228.85EIF2B3'protein_coding'1131AELoss-52.849EU ES AB E8_Db0.00
1231238.85AC009065.2'lincRNA'12AELoss-59.134EU AB IR E1a_E2a0
1241248.84ZNF137'protein_coding'716AELoss-53.427EU AB E4_Aa0
1251258.84WDR32'protein_coding'514AELoss-33.422AB E8_Db0
1261268.82BMS1P1'pseudogene'316AELoss-80.906EU AB E9_Aa75.00
1271278.72PKD1'protein_coding'26115AELoss-137.7716EU AB E28_Db16.67
1281288.69HN1'protein_coding'1224AELoss-51.7610EU ES AB ER8d40.00
1291298.69AGRN'protein_coding'1054AELoss-40.438EU AB E25_Aa50.00
1301308.68EIF4G3'protein_coding'1663AELoss-45.9612EU ES AB CE E4_Aa33.33
1311318.68HMGB1'protein_coding'1227AELoss-140.3118EU ES AB IR E6b_E7b33.33
1321328.66ACSS2'protein_coding'2770AELoss-33.2910EU AB IR E9_Aa0.00
1331338.65ING4'protein_coding'2346AELoss-178.838EU ES AB E4_Aa50.00
1341348.65AC007390.4'protein_coding'718AELoss-26.594EU AB E7_Ad100.00
1351358.64RAB7A'protein_coding'1026AELoss-163.467EU AB E5b_E5c50.00
1361368.64DLL3'protein_coding'210AELoss-30.583EU AB E4a_E5a0
1371378.63TRAPPC2'protein_coding'819AELoss-52.656EU ES AB E5a_E5b33.33
1381388.63ETV5'protein_coding'1439AELoss-34.444EU ES AB E8_Db0.00
1391398.62C7orf44'protein_coding'2047AELoss-128.7812EU ES AB CE E11_Df0.00
1401408.62TUBA1B'protein_coding'26AEGain42.693EU AB E4_Da0.00
1411418.61AC026271.1'processed_transcript'210AELoss-40.673EU AB E8_Aa0
1421428.57AC073940.1'pseudogene'12AELoss-130.613EU AB E2_Aa0
1431438.49POLR2B'protein_coding'1347AELoss-45.017EU AB IR E3_Ab50.00
1441448.48AKR1B1'protein_coding'1641AELoss-124.3612EU AB E5_Ab25.00
1451458.47H6PD'protein_coding'27AELoss-127.922AB E5_Ac0
1461468.44UBE2V1'protein_coding'2142AELoss-47.1213EU ES AB ER14b0.00
1471478.44ARIH2'protein_coding'3576AELoss-45.2125EU ES AB E5_Dd69.23
1481488.42RABGEF1'protein_coding'1028AELoss-32.369EU AB IR E9a_E10a0.00
1491498.41SON'protein_coding'2558AELoss-42.759EU AB E3_Da20.00
1501508.41ABHD14A'protein_coding'1140AELoss-146.092AB E5_Ab0
1511518.40AC133555.1'protein_coding'14AELoss-182.503EU AB E3a_E4a0
1521528.40PPP2R4'protein_coding'2754AELoss-20.906EU ES AB E5_Ab66.67
1531538.40HK1'protein_coding'2460AELoss-23.565EU AB E6_Aa0
1541548.38RPL13P5'processed_transcript'511AELoss-32.612AB E4_Ac0
1551558.37CCDC12'protein_coding'925AELoss-45.285EU AB E4_Db33.33
1561568.36RP11-236F9.2'protein_coding'311AELoss-21.597EU ES ER3a83.33
1571578.35TMSB4X'protein_coding'510AEGain6.005EU AB ER2d66.67
1581588.34GSDMB'protein_coding'1428AELoss-32.0010EU AB E2_Ad25.00
1591598.33AP000662.1'lincRNA'12AELoss-45.283EU AB E1_Da0
1601608.31AL590714.1'protein_coding'15AELoss-46.595EU AB IR CE E1a_E2a0
1611618.31GFAP'protein_coding'411DELoss-316.362EU GFAP0.00
1621628.28MAP3K7IP2'protein_coding'619AELoss-123.973ES AB E5_Aa0
1631638.28CIDECP'processed_transcript'713AELoss-30.311AB E4_Aa0
1641648.26HLA-B'protein_coding'1029AELoss-45.1216EU ES AB E1f_E1o30.00
1651658.25PPIL2'protein_coding'1658AELoss-14.0629EU AB IR E8_Da28.57
1661668.24AC002094.4'pseudogene'13AELoss-25.152EU AB E2a_E3a0
1671678.22NPL'protein_coding'1540AELoss-41.874AB E8_Da0
1681688.22RANBP2'protein_coding'1149AELoss-110.362AB E13_Dc0
1691698.21AL354696.3'lincRNA'12AELoss-125.622AB E1_Da0
1701708.20HLA-H'pseudogene'17AELoss-15.842EU E2a_E3a0.00
1711718.20RPS28'protein_coding'36AEGain24.934EU ER2d33.33
1721728.19CCNL2'protein_coding'2158AELoss-22.794EU AB E9_Da0
1731738.19CYP20A1'protein_coding'1443AELoss-82.728EU ES AB CE E7a_E10a33.33
1741748.19MGST3'protein_coding'1431AELoss-43.3312EU ES AB E1_Ag33.33
1751758.14SLC27A1'protein_coding'418AELoss-21.702EU AB E8_Aa0
1761768.13IPP'protein_coding'517AELoss-23.734ES AB E11_Aa0
1771778.13DBR1'protein_coding'414AELoss-42.572EU AB E4_Da0
1781788.12HEATR3'protein_coding'620AELoss-38.133EU AB E13_Ab0.00
1791798.12PSME2'protein_coding'418AELoss-34.914EU ES AB E5a_E6c0.00
1801808.11RETSAT'protein_coding'1030AELoss-37.315EU AB E6_Da0
1811818.10KLHDC8A'protein_coding'414AELoss-10.033EU AB E9_Da0
1821828.09AFG3L1'processed_transcript'1841AELoss-100.433EU AB E2_Dc0
1831838.08GNL3L'protein_coding'530AELoss-55.798EU ES AB E19e_E19d80.00
1841848.06GTF2I'protein_coding'2170AELoss-41.3619EU ES AB E28a_E29a20.00
1851858.06NRSN2'protein_coding'514AELoss-20.502AB E6_Db0
1861868.04CC2D1A'protein_coding'535AELoss-25.815EU ES AB E24_Aa0.00
1871878.03PARP1'protein_coding'1042AELoss-126.246EU AB ER24c50.00
1881888.02MMADHC'protein_coding'621AELoss-92.936EU ES AB E8_Da33.33
1891898.01MTRF1'protein_coding'1133AELoss-34.276EU ES AB E6_Da50.00
1901908.01AL035420.2'lincRNA'12AEGain104.572EU AB ER2a0
1911918.00CBS'protein_coding'1848AELoss-38.997EU ES AB E4_Aa33.33
1921928.00RAB5A'protein_coding'1028AELoss-29.884EU AB E2_Da0.00
1931937.98FTSJ2'protein_coding'614AELoss-37.043EU AB E5_Da0
1941947.98SAP18'protein_coding'818AELoss-21.877EU AB E1_Ac0.00
1951957.97TRIM33'protein_coding'727AELoss-87.207EU AB CE E16_Db33.33
1961967.96RPL3'protein_coding'2248AELoss-23.4019EU ES AB E6_Ad23.08
1971977.96MRPL48'protein_coding'313AELoss-12.835EU ES AB E6_Aa100.00
1981987.96POLR2H'protein_coding'1433AELoss-36.618EU AB E6_Aa0.00
1991997.95WNK1'protein_coding'431AELoss-35.481EU E28a_E29a0
2002007.95POLM'protein_coding'2049AELoss-34.486EU AB E6_Ab50.00
2012017.95SUPT16H'protein_coding'126AELoss-30.625EU E16a_E17a50.00
2022027.94HLA-DRA'protein_coding'413DELoss-245.360N/AHLA-DRAN/A
2032037.92ACTB'protein_coding'1436AELoss-153.033EU AB E7_Ab0
2042047.91C7orf59'protein_coding'1222AELoss-36.4816EU ES AB IR E3_Dc55.56
2052057.87AC013283.2'lincRNA'12AELoss-31.672EU AB E1_Da0
2062067.83HSPD1'protein_coding'1443AELoss-26.7010EU ES AB E5_Db50.00
2072077.83AL691432.1'lincRNA'14AELoss-80.214EU AB E3_Aa0
2082087.81AC010323.2'lincRNA'12AELoss-94.863EU AB E1a_E2a0
2092097.81AC007308.1'processed_transcript'12AELoss-30.842EU AB ENST000004307190
2102107.80RP3-476K8.2'processed_transcript'12AELoss-76.971AB E2_Aa0
2112117.78XPO1'protein_coding'3188AELoss-22.5712EU AB E6_Aa20.00
2122127.78SPP1'protein_coding'411AELoss-5.549EU ES AB E6_Da71.43
2132137.76NGDN'protein_coding'313AELoss-26.022EU E5a_E6a0.00
2142147.75TRIM67'protein_coding'520DELoss-215.090N/ATRIM67N/A
2152157.73USP33'protein_coding'1040AELoss-24.6912EU ES AB CE E2_Ab20.00
2162167.73DCUN1D2'protein_coding'1229AELoss-25.981AB E10_Db0
2172177.72CASC5'protein_coding'329AELoss-22.104EU AB E7_Da0.00
2182187.72NDUFB5'protein_coding'1640AELoss-26.9016EU ES AB E7_Aa60.00
2192197.71SUMO2'protein_coding'24AELoss-25.854EU E3a_E4a66.67
2202207.70RP11-30L4.1'processed_transcript'12AELoss-25.281AB E2_Aa0
2212217.70AP002770.2'lincRNA'13AELoss-24.381AB E2_Da0
2222227.69PDHA1'protein_coding'1234AELoss-20.817EU ES AB E11_Aa25.00
2232237.68MAST2'protein_coding'1568AELoss-26.611AB E7_Da0
2242247.68NME2'protein_coding'916AELoss-83.513EU AB ER5a0.00
2252257.68SNORA72'lincRNA'12AELoss-84.471AB E1_Da0
2262267.67SF3A3'protein_coding'932AELoss-17.284EU AB E15_Aa100.00
2272277.66PLA2G6'protein_coding'3584AELoss-20.8419EU ES AB CE E15_Da30.00
2282287.64AC138409.3'protein_coding'28AELoss-81.1513EU AB IR E5a_E6a33.33
2292297.63GFPT1'protein_coding'530AELoss-18.432EU AB E3_Da0
2302307.60BGN'protein_coding'930DELoss-194.120N/ABGNN/A
2312317.59SAR1B'protein_coding'414AELoss-32.625EU AB E2_Da50.00
2322327.59WDR44'protein_coding'835AELoss-29.424EU AB E22_Da0.00
2332337.59AC024075.1'lincRNA'12AELoss-128.711AB E1_Da0
2342347.58MED24'protein_coding'1350AELoss-71.8911EU ES AB E2_Aa50.00
2352357.58PCGF6'protein_coding'621AELoss-16.944EU AB E7_Aa100.00
2362367.57ZC3H11A'protein_coding'1243AELoss-28.2311EU AB E5a_E6a50.00
2372377.56AC093616.1'processed_transcript'12AELoss-69.452AB E1_Da0
2382387.56RPS21'protein_coding'819AEGain111.329EU AB ER3e57.14
2392397.55AC096663.2'pseudogene'24AELoss-131.023EU AB E1_Da0
2402407.53PDDC1'protein_coding'619AELoss-101.225EU AB E6f_E6g0.00
2412417.52HERC4'protein_coding'1244AELoss-15.304EU AB E4_Da100.00
2422427.52CRTC2'protein_coding'933AELoss-105.135EU AB E8_Aa50.00
2432437.52AC018633.1'pseudogene'226AELoss-28.6910EU AB E18_Aa0.00
2442447.52SORBS3'protein_coding'424AELoss-51.8821EU ER9a95.00
2452457.52CNN3'protein_coding'617AELoss-27.331AB E3_Aa0
2462467.51SFRS18'protein_coding'1032AELoss-89.1210EU AB E3_Dc50.00
2472477.51FAM3C'protein_coding'724AELoss-12.0410EU AB CE E10c_E11b20.00
2482487.50AC012170.2'lincRNA'15AELoss-47.967EU AB E3a_E4a100.00
2492497.50FAM45A'protein_coding'1130AELoss-25.0410EU ES AB E12_Aa25.00
2502507.50SSB'protein_coding'1333AELoss-27.697EU ES AB E6_Dc25.00
2512517.47FAM76A'protein_coding'718AELoss-30.473EU AB E3_Aa0


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.51C7orf46'protein_coding'821AELoss-160.8922EU ES AB IR E3_Da57.14
2214.48AP000692.1'processed_transcript'12AELoss-546.823EU AB E1a_E2a0
3314.27AASS'protein_coding'739AELoss-289.289EU AB IR CE E24_Dc50.00
4413.90CHEK2'protein_coding'3065AELoss-404.4012EU ES AB E11b_E23b33.33
5513.85RP1-12G14.4'pseudogene'22AELoss-2495.362AB E1_Ab0
6613.59AC133435.2'lincRNA'12AELoss-2177.723EU AB E1a_E2a0
7713.56ST3GAL5'protein_coding'1535AELoss-205.855EU AB E17_Aa0.00
8813.18GTPBP5'protein_coding'1330AELoss-393.2425EU ES AB E3_Db47.37
9913.15C19orf29'protein_coding'422AELoss-292.6511EU AB E4_Aa50.00
101013.06AIFM1'protein_coding'624AELoss-227.642EU AB E11_Aa0
111112.66AC007216.1'pseudogene'13AELoss-283.075EU AB E2a_E3a0.00
121212.65MORC2'protein_coding'638AELoss-97.604EU ES AB E2_Da100.00
131312.55SLC25A15'protein_coding'720AELoss-122.902EU AB E9_Aa0
141412.35FAM116A'protein_coding'938AELoss-223.895EU ES AB CE E21_Ab0.00
151512.25PQLC2'protein_coding'923AELoss-96.015EU AB E10_Aa66.67
161612.23ZNF283'protein_coding'942AELoss-187.3011EU ES AB CE E17_Db0.00
171712.03RPS29'protein_coding'24AEGain484.864EU ES E2a_E3a100.00
181811.84RPS10'protein_coding'714AEGain106.857EU ES E4a_E5a50.00
191911.79LIMK1'protein_coding'931AELoss-98.995EU AB E16_Aa50.00
202011.59CYB561D1'protein_coding'815AELoss-176.962AB E2_Db0
212111.52TMEM104'protein_coding'213AELoss-61.855EU ES AB CE E3_Da100.00
222211.39DOCK4'protein_coding'2187AELoss-127.732AB E51_Aa0
232311.26C17orf45'protein_coding'2044AELoss-351.6920EU AB ER2j50.00
242411.22CHCHD2'protein_coding'26AELoss-200.134EU AB E1_Ab100.00
252511.13AC128648.1'protein_coding'18AELoss-576.907EU AB E2a_E3a66.67
262611.13MLL3'protein_coding'1899AELoss-162.0515EU AB IR CE E62a_E63a66.67
272711.04AKT2'protein_coding'2672AELoss-67.4514EU ES AB E9_Aa0.00
282811.02FIS1'protein_coding'919AELoss-513.656EU ES AB E5_Aa33.33
292910.90SLC25A17'protein_coding'1644AELoss-124.076EU AB CE E3_Da50.00
303010.90MAP2K2'protein_coding'826AELoss-126.964EU AB E7a_E7c50.00
313110.86AC034193.2'lincRNA'12AELoss-95.012AB E1_Da0
323210.84AC005197.3'protein_coding'12AELoss-120.222AB E1_Da0
333310.83EIF4A2'protein_coding'2961AELoss-115.6416EU AB E2_Dg33.33
343410.75RWDD2B'protein_coding'718AELoss-88.256EU ES AB E2_Da50.00
353510.73C9orf80'protein_coding'720AELoss-116.5510EU ES AB E3_Db50.00
363610.69STRBP'protein_coding'1042AELoss-100.834EU AB E2_Aa0
373710.64PHACTR4'protein_coding'729AELoss-119.108EU ES AB E19_Dc40.00
383810.64OGT'protein_coding'1246AELoss-92.416EU AB E4_Da0.00
393910.64PTPRZ1'protein_coding'1255AELoss-76.8411EU ES AB E16_Ad16.67
404010.63DHTKD1'protein_coding'627AELoss-121.943EU AB E16_Db0
414110.63AL356970.1'pseudogene'12AELoss-54.813EU AB E1a_E2a0
424210.62PANK1'protein_coding'720AELoss-74.982EU AB E4_Da0
434310.61C21orf58'protein_coding'1331AELoss-100.284EU AB E9_Dd0
444410.56AL138795.6'protein_coding'212AELoss-77.839EU AB E8_Da0
454510.53FAM73A'protein_coding'422AELoss-107.9710EU ES AB E10f_E11a42.86
464610.50MSH5'protein_coding'2878AELoss-383.8814EU ES AB CE E15a_E16a33.33
474710.48RPS26'protein_coding'14AEGain6.298EU AB E2_Da100.00
484810.46RPS3A'protein_coding'16AEGain381.598EU ES ER2a71.43
494910.41NMNAT1'protein_coding'615AELoss-47.1912EU AB ENST0000046268675.00
505010.38HNRNPA1'protein_coding'314AEGain82.828EU E2a_E3a57.14
515110.37RPL37'protein_coding'28AEGain109.734EU ER3a0.00
525210.37ELK4'protein_coding'38AELoss-81.991AB E2_Da0
535310.35CEP55'protein_coding'519AELoss-89.751AB E8_Dd0
545410.32IDH1'protein_coding'1338AELoss-27.7210EU ES AB CE E2_Aa75.00
555510.32CHN2'protein_coding'2664AELoss-72.3640EU ES AB E7_Aa48.28
565610.22PHC3'protein_coding'2459AELoss-84.6911EU ES AB E6_Da25.00
575710.19RP5-826L7.1'processed_transcript'12AELoss-92.463EU AB E2_Aa0
585810.18SNRNP25'protein_coding'719AELoss-82.008EU AB E2_Aa60.00
595910.17CXorf57'protein_coding'726AELoss-58.933AB E9_Aa0
606010.08AC087742.1'lincRNA'16AELoss-112.858EU AB IR E1a_E2a100.00
616110.08MKRN1'protein_coding'1644AELoss-52.967EU ES AB E9_Aa100.00
626210.03MDM2'protein_coding'2236AELoss-32.985EU AB ER14c100.00
636310.03FARP1'protein_coding'839AELoss-261.063EU AB E20_Aa0
646410.03RP11-179H18.3'processed_transcript'12AELoss-98.451AB E1_Da0
656510.02AC118282.2'protein_coding'24AELoss-5.563EU AB E1a_E2b100.00
66669.97RPL37A'protein_coding'819AEGain49.634EU E1c_E1j33.33
67679.94CROCCL1'processed_transcript'420AELoss-94.825EU ES AB E11_Db0.00
68689.90THOC7'protein_coding'822AELoss-44.564EU AB E2_Aa100.00
69699.89AC121253.1'protein_coding'46AELoss-53.904EU AB E1_Dd0
70709.86SLC2A11'protein_coding'3070AELoss-78.6218EU ES AB E13_Df50.00
71719.86TOP2A'protein_coding'557AELoss-40.219EU AB E19_Da20.00
72729.72C10orf18'protein_coding'1239AELoss-72.7312EU AB E23_Db33.33
73739.69NHP2L1'protein_coding'1022AELoss-39.444EU AB E8_Dc100.00
74749.69ZNF425'protein_coding'512AELoss-75.783EU AB E5_Ab0
75759.69PRPF3'protein_coding'829AELoss-350.892AB E14_Aa0
76769.66RPL23A'protein_coding'718AELoss-26.7517EU ES AB IR CE E1a_E4b28.57
77779.64RPS27'protein_coding'410AEGain25.165EU E2a_E2b25.00
78789.64CD46'protein_coding'2736AELoss-37.739EU AB E5_Ae25.00
79799.60ACTA2'protein_coding'717AELoss-59.114EU AB E4_Db50.00
80809.55TNRC18'protein_coding'1565AELoss-39.778EU AB E25_Da0
81819.55AC012652.5'lincRNA'13AELoss-224.612EU AB E2a_E3a0
82829.55AL136180.1'protein_coding'12AELoss-73.851AB E2_Aa0
83839.52NUDT1'protein_coding'1320AELoss-46.693EU ES AB E4_Da100.00
84849.51ARMC10'protein_coding'1024AELoss-86.6310EU AB E9_Aa100.00
85859.48TTF2'protein_coding'841AELoss-54.276EU AB E11_Aa50.00
86869.48C1orf151'protein_coding'1128AELoss-52.1517EU AB IR E3_Aa57.14
87879.47MLC1'protein_coding'722AELoss-59.066EU ES E7a_E9a20.00
88889.44CDC16'protein_coding'1237AELoss-52.486EU AB E18_Aa66.67
89899.43TAF13'protein_coding'27AELoss-42.035EU AB E5_Aa50.00
90909.42DHX34'protein_coding'633AELoss-195.811AB E15_Aa0
91919.39HNRNPC'protein_coding'818AELoss-72.319EU ES AB E2_Da25.00
92929.37MRPS18B'protein_coding'513AELoss-92.095EU AB E2_Dd33.33
93939.37KIAA1704'protein_coding'824AELoss-54.789EU ES AB E13_Aa0.00
94949.36TMEM111'protein_coding'517AELoss-68.563EU AB E2_Aa0
95959.35SEPT2'protein_coding'47102AELoss-348.625EU ES AB E12_Da50.00
96969.34MLLT6'protein_coding'1038AELoss-249.652AB E13_Db0
97979.34FAT3'protein_coding'534AELoss-3.708EU ES AB E3_Aa66.67
98989.34VCAN'protein_coding'518AELoss-53.1911EU AB IR CE E13a_E14a0
99999.25C22orf25'protein_coding'2757AELoss-50.5911EU AB E6_Db20.00
1001009.23HMGN1'protein_coding'2146AELoss-39.377EU AB ER5j0.00
1011019.22SEPT7'protein_coding'1433AELoss-44.694EU ES AB E1b_E5a50.00
1021029.22AC100786.1'protein_coding'26AEGain40.425EU E3a_E4a50.00
1031039.21PDHB'protein_coding'1034AELoss-49.576EU AB E1_Dg33.33
1041059.16AC010733.5'processed_transcript'12AELoss-63.501AB E2_Aa0
1051069.14RNF121'protein_coding'418AELoss-37.843EU AB E4_Aa0.00
1061079.10P4HB'protein_coding'1541AELoss-35.237EU ES AB E8a_E8c0.00
1071089.09CHCHD9'protein_coding'22AELoss-52.711AB E1_Da0
1081099.08C4orf36'protein_coding'313AELoss-50.353AB E9_Dc0
1091109.05NDUFS2'protein_coding'1545AELoss-47.139EU ES AB E13_Aa25.00
1101119.03ANO10'protein_coding'1952AELoss-59.9015EU ES AB E4_Ab40.00
1111128.99AIMP2'protein_coding'412AELoss-33.713EU ES AB E3_Aa100.00
1121138.98RPL9'protein_coding'312AEGain38.649EU AB E3a_E4a57.14
1131148.97RPL7A'protein_coding'1127AELoss-230.368EU AB E2_Ab16.67
1141158.96AC004540.1'processed_transcript'822AELoss-22.707EU AB E6_Da50.00
1151168.94AC007620.1'processed_transcript'12AELoss-60.651AB E1_Da0
1161178.94RP11-3J10.3'pseudogene'23AELoss-61.542EU AB ENST000003965190
1171188.92CNOT10'protein_coding'1952AELoss-170.5314EU ES AB E21_Ab16.67
1181198.91PSIP1'protein_coding'1134AELoss-38.371EU E9a_E10a0
1191208.90RPL13A'protein_coding'1235AEGain40.2315EU AB E2c_E2e50.00
1201228.85EIF2B3'protein_coding'1131AELoss-52.849EU ES AB E8_Db0.00
1211238.85AC009065.2'lincRNA'12AELoss-59.134EU AB IR E1a_E2a0
1221248.84ZNF137'protein_coding'716AELoss-53.427EU AB E4_Aa0
1231258.84WDR32'protein_coding'514AELoss-33.422AB E8_Db0
1241268.82BMS1P1'pseudogene'316AELoss-80.906EU AB E9_Aa75.00
1251278.72PKD1'protein_coding'26115AELoss-137.7716EU AB E28_Db16.67
1261288.69HN1'protein_coding'1224AELoss-51.7610EU ES AB ER8d40.00
1271298.69AGRN'protein_coding'1054AELoss-40.438EU AB E25_Aa50.00
1281308.68EIF4G3'protein_coding'1663AELoss-45.9612EU ES AB CE E4_Aa33.33
1291318.68HMGB1'protein_coding'1227AELoss-140.3118EU ES AB IR E6b_E7b33.33
1301328.66ACSS2'protein_coding'2770AELoss-33.2910EU AB IR E9_Aa0.00
1311338.65ING4'protein_coding'2346AELoss-178.838EU ES AB E4_Aa50.00
1321348.65AC007390.4'protein_coding'718AELoss-26.594EU AB E7_Ad100.00
1331358.64RAB7A'protein_coding'1026AELoss-163.467EU AB E5b_E5c50.00
1341368.64DLL3'protein_coding'210AELoss-30.583EU AB E4a_E5a0
1351378.63TRAPPC2'protein_coding'819AELoss-52.656EU ES AB E5a_E5b33.33
1361388.63ETV5'protein_coding'1439AELoss-34.444EU ES AB E8_Db0.00
1371398.62C7orf44'protein_coding'2047AELoss-128.7812EU ES AB CE E11_Df0.00
1381408.62TUBA1B'protein_coding'26AEGain42.693EU AB E4_Da0.00
1391418.61AC026271.1'processed_transcript'210AELoss-40.673EU AB E8_Aa0
1401428.57AC073940.1'pseudogene'12AELoss-130.613EU AB E2_Aa0
1411438.49POLR2B'protein_coding'1347AELoss-45.017EU AB IR E3_Ab50.00
1421448.48AKR1B1'protein_coding'1641AELoss-124.3612EU AB E5_Ab25.00
1431458.47H6PD'protein_coding'27AELoss-127.922AB E5_Ac0
1441468.44UBE2V1'protein_coding'2142AELoss-47.1213EU ES AB ER14b0.00
1451478.44ARIH2'protein_coding'3576AELoss-45.2125EU ES AB E5_Dd69.23
1461488.42RABGEF1'protein_coding'1028AELoss-32.369EU AB IR E9a_E10a0.00
1471498.41SON'protein_coding'2558AELoss-42.759EU AB E3_Da20.00
1481508.41ABHD14A'protein_coding'1140AELoss-146.092AB E5_Ab0
1491518.40AC133555.1'protein_coding'14AELoss-182.503EU AB E3a_E4a0
1501528.40PPP2R4'protein_coding'2754AELoss-20.906EU ES AB E5_Ab66.67
1511538.40HK1'protein_coding'2460AELoss-23.565EU AB E6_Aa0
1521548.38RPL13P5'processed_transcript'511AELoss-32.612AB E4_Ac0
1531558.37CCDC12'protein_coding'925AELoss-45.285EU AB E4_Db33.33
1541568.36RP11-236F9.2'protein_coding'311AELoss-21.597EU ES ER3a83.33
1551578.35TMSB4X'protein_coding'510AEGain6.005EU AB ER2d66.67
1561588.34GSDMB'protein_coding'1428AELoss-32.0010EU AB E2_Ad25.00
1571598.33AP000662.1'lincRNA'12AELoss-45.283EU AB E1_Da0
1581608.31AL590714.1'protein_coding'15AELoss-46.595EU AB IR CE E1a_E2a0
1591618.31GFAP'protein_coding'411DELoss-316.362EU GFAP0.00
1601628.28MAP3K7IP2'protein_coding'619AELoss-123.973ES AB E5_Aa0
1611638.28CIDECP'processed_transcript'713AELoss-30.311AB E4_Aa0
1621648.26HLA-B'protein_coding'1029AELoss-45.1216EU ES AB E1f_E1o30.00
1631658.25PPIL2'protein_coding'1658AELoss-14.0629EU AB IR E8_Da28.57
1641668.24AC002094.4'pseudogene'13AELoss-25.152EU AB E2a_E3a0
1651678.22NPL'protein_coding'1540AELoss-41.874AB E8_Da0
1661688.22RANBP2'protein_coding'1149AELoss-110.362AB E13_Dc0
1671698.21AL354696.3'lincRNA'12AELoss-125.622AB E1_Da0
1681708.20HLA-H'pseudogene'17AELoss-15.842EU E2a_E3a0.00
1691718.20RPS28'protein_coding'36AEGain24.934EU ER2d33.33
1701728.19CCNL2'protein_coding'2158AELoss-22.794EU AB E9_Da0
1711738.19CYP20A1'protein_coding'1443AELoss-82.728EU ES AB CE E7a_E10a33.33
1721748.19MGST3'protein_coding'1431AELoss-43.3312EU ES AB E1_Ag33.33
1731758.14SLC27A1'protein_coding'418AELoss-21.702EU AB E8_Aa0
1741768.13IPP'protein_coding'517AELoss-23.734ES AB E11_Aa0
1751778.13DBR1'protein_coding'414AELoss-42.572EU AB E4_Da0
1761788.12HEATR3'protein_coding'620AELoss-38.133EU AB E13_Ab0.00
1771798.12PSME2'protein_coding'418AELoss-34.914EU ES AB E5a_E6c0.00
1781808.11RETSAT'protein_coding'1030AELoss-37.315EU AB E6_Da0
1791818.10KLHDC8A'protein_coding'414AELoss-10.033EU AB E9_Da0
1801828.09AFG3L1'processed_transcript'1841AELoss-100.433EU AB E2_Dc0
1811838.08GNL3L'protein_coding'530AELoss-55.798EU ES AB E19e_E19d80.00
1821848.06GTF2I'protein_coding'2170AELoss-41.3619EU ES AB E28a_E29a20.00
1831858.06NRSN2'protein_coding'514AELoss-20.502AB E6_Db0
1841868.04CC2D1A'protein_coding'535AELoss-25.815EU ES AB E24_Aa0.00
1851878.03PARP1'protein_coding'1042AELoss-126.246EU AB ER24c50.00
1861888.02MMADHC'protein_coding'621AELoss-92.936EU ES AB E8_Da33.33
1871898.01MTRF1'protein_coding'1133AELoss-34.276EU ES AB E6_Da50.00
1881908.01AL035420.2'lincRNA'12AEGain104.572EU AB ER2a0
1891918.00CBS'protein_coding'1848AELoss-38.997EU ES AB E4_Aa33.33
1901928.00RAB5A'protein_coding'1028AELoss-29.884EU AB E2_Da0.00
1911937.98FTSJ2'protein_coding'614AELoss-37.043EU AB E5_Da0
1921947.98SAP18'protein_coding'818AELoss-21.877EU AB E1_Ac0.00
1931957.97TRIM33'protein_coding'727AELoss-87.207EU AB CE E16_Db33.33
1941967.96RPL3'protein_coding'2248AELoss-23.4019EU ES AB E6_Ad23.08
1951977.96MRPL48'protein_coding'313AELoss-12.835EU ES AB E6_Aa100.00
1961987.96POLR2H'protein_coding'1433AELoss-36.618EU AB E6_Aa0.00
1971997.95WNK1'protein_coding'431AELoss-35.481EU E28a_E29a0
1982007.95POLM'protein_coding'2049AELoss-34.486EU AB E6_Ab50.00
1992017.95SUPT16H'protein_coding'126AELoss-30.625EU E16a_E17a50.00
2002037.92ACTB'protein_coding'1436AELoss-153.033EU AB E7_Ab0
2012047.91C7orf59'protein_coding'1222AELoss-36.4816EU ES AB IR E3_Dc55.56
2022057.87AC013283.2'lincRNA'12AELoss-31.672EU AB E1_Da0
2032067.83HSPD1'protein_coding'1443AELoss-26.7010EU ES AB E5_Db50.00
2042077.83AL691432.1'lincRNA'14AELoss-80.214EU AB E3_Aa0
2052087.81AC010323.2'lincRNA'12AELoss-94.863EU AB E1a_E2a0
2062097.81AC007308.1'processed_transcript'12AELoss-30.842EU AB ENST000004307190
2072107.80RP3-476K8.2'processed_transcript'12AELoss-76.971AB E2_Aa0
2082117.78XPO1'protein_coding'3188AELoss-22.5712EU AB E6_Aa20.00
2092127.78SPP1'protein_coding'411AELoss-5.549EU ES AB E6_Da71.43
2102137.76NGDN'protein_coding'313AELoss-26.022EU E5a_E6a0.00
2112157.73USP33'protein_coding'1040AELoss-24.6912EU ES AB CE E2_Ab20.00
2122167.73DCUN1D2'protein_coding'1229AELoss-25.981AB E10_Db0
2132177.72CASC5'protein_coding'329AELoss-22.104EU AB E7_Da0.00
2142187.72NDUFB5'protein_coding'1640AELoss-26.9016EU ES AB E7_Aa60.00
2152197.71SUMO2'protein_coding'24AELoss-25.854EU E3a_E4a66.67
2162207.70RP11-30L4.1'processed_transcript'12AELoss-25.281AB E2_Aa0
2172217.70AP002770.2'lincRNA'13AELoss-24.381AB E2_Da0
2182227.69PDHA1'protein_coding'1234AELoss-20.817EU ES AB E11_Aa25.00
2192237.68MAST2'protein_coding'1568AELoss-26.611AB E7_Da0
2202247.68NME2'protein_coding'916AELoss-83.513EU AB ER5a0.00
2212257.68SNORA72'lincRNA'12AELoss-84.471AB E1_Da0
2222267.67SF3A3'protein_coding'932AELoss-17.284EU AB E15_Aa100.00
2232277.66PLA2G6'protein_coding'3584AELoss-20.8419EU ES AB CE E15_Da30.00
2242287.64AC138409.3'protein_coding'28AELoss-81.1513EU AB IR E5a_E6a33.33
2252297.63GFPT1'protein_coding'530AELoss-18.432EU AB E3_Da0
2262317.59SAR1B'protein_coding'414AELoss-32.625EU AB E2_Da50.00
2272327.59WDR44'protein_coding'835AELoss-29.424EU AB E22_Da0.00
2282337.59AC024075.1'lincRNA'12AELoss-128.711AB E1_Da0
2292347.58MED24'protein_coding'1350AELoss-71.8911EU ES AB E2_Aa50.00
2302357.58PCGF6'protein_coding'621AELoss-16.944EU AB E7_Aa100.00
2312367.57ZC3H11A'protein_coding'1243AELoss-28.2311EU AB E5a_E6a50.00
2322377.56AC093616.1'processed_transcript'12AELoss-69.452AB E1_Da0
2332387.56RPS21'protein_coding'819AEGain111.329EU AB ER3e57.14
2342397.55AC096663.2'pseudogene'24AELoss-131.023EU AB E1_Da0
2352407.53PDDC1'protein_coding'619AELoss-101.225EU AB E6f_E6g0.00
2362417.52HERC4'protein_coding'1244AELoss-15.304EU AB E4_Da100.00
2372427.52CRTC2'protein_coding'933AELoss-105.135EU AB E8_Aa50.00
2382437.52AC018633.1'pseudogene'226AELoss-28.6910EU AB E18_Aa0.00
2392447.52SORBS3'protein_coding'424AELoss-51.8821EU ER9a95.00
2402457.52CNN3'protein_coding'617AELoss-27.331AB E3_Aa0
2412467.51SFRS18'protein_coding'1032AELoss-89.1210EU AB E3_Dc50.00
2422477.51FAM3C'protein_coding'724AELoss-12.0410EU AB CE E10c_E11b20.00
2432487.50AC012170.2'lincRNA'15AELoss-47.967EU AB E3a_E4a100.00
2442497.50FAM45A'protein_coding'1130AELoss-25.0410EU ES AB E12_Aa25.00
2452507.50SSB'protein_coding'1333AELoss-27.697EU ES AB E6_Dc25.00
2462517.47FAM76A'protein_coding'718AELoss-30.473EU AB E3_Aa0
2472527.47XXyac-R12DG2.3'protein_coding'416AELoss-112.2611EU ES AB CE E2_Aa0.00
2482537.47TAPBPL'protein_coding'218AELoss-80.904EU AB E14a_E15a0
2492547.45MSH6'protein_coding'822AELoss-26.913EU AB E5_Da100.00
2502557.45MACF1'protein_coding'31160AELoss-67.8918EU AB IR E8_Da0.00
2512567.45C1orf61'protein_coding'2757AELoss-18.5921EU ES AB E10_Dh53.33


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
11712.03RPS29'protein_coding'24AEGain484.864EU ES E2a_E3a100.00
21811.84RPS10'protein_coding'714AEGain106.857EU ES E4a_E5a50.00
34710.48RPS26'protein_coding'14AEGain6.298EU AB E2_Da100.00
44810.46RPS3A'protein_coding'16AEGain381.598EU ES ER2a71.43
55010.38HNRNPA1'protein_coding'314AEGain82.828EU E2a_E3a57.14
65110.37RPL37'protein_coding'28AEGain109.734EU ER3a0.00
7669.97RPL37A'protein_coding'819AEGain49.634EU E1c_E1j33.33
8779.64RPS27'protein_coding'410AEGain25.165EU E2a_E2b25.00
91029.22AC100786.1'protein_coding'26AEGain40.425EU E3a_E4a50.00
101138.98RPL9'protein_coding'312AEGain38.649EU AB E3a_E4a57.14
111208.90RPL13A'protein_coding'1235AEGain40.2315EU AB E2c_E2e50.00
121408.62TUBA1B'protein_coding'26AEGain42.693EU AB E4_Da0.00
131578.35TMSB4X'protein_coding'510AEGain6.005EU AB ER2d66.67
141718.20RPS28'protein_coding'36AEGain24.934EU ER2d33.33
151908.01AL035420.2'lincRNA'12AEGain104.572EU AB ER2a0
162387.56RPS21'protein_coding'819AEGain111.329EU AB ER3e57.14
172597.44MFAP4'protein_coding'38DEGain173.470N/AMFAP4N/A
182837.31EEF1A1'protein_coding'1131AEGain21.6622EU AB E3c_E4a40.00
192847.28WISP1'protein_coding'45DEGain155.790N/AWISP1N/A
203007.19SPCS2'protein_coding'15AEGain48.554EU ER2a100.00
213037.16BX322613.2'protein_coding'25DEGain143.330N/ABX322613.2N/A
223416.92RPL15'protein_coding'1431AEGain21.2111EU AB E1g_E1n0.00
233426.92RPS2'protein_coding'17AEGain14.123EU E2a_E3a50.00
243546.82UQCRQ'protein_coding'715AEGain45.335EU AB E1d_E1i33.33
254026.63PSMC1'protein_coding'111AEGain13.165EU E3a_E4a25.00
264096.59AE000661.20'IG_C_gene'13DEGain96.530N/AAE000661.20N/A
274126.59COX8A'protein_coding'12AEGain15.571EU E1a_E2a0
284296.54AGTR1'protein_coding'1020DEGain93.200N/AAGTR1N/A
294456.46YJEFN3'protein_coding'722AEGain8.4110EU AB CE E2a_E3a66.67
304466.46CNPY2'protein_coding'16AEGain16.183AB I3_SR40
314556.39RPS27A'protein_coding'1129AEGain14.6114EU AB ER3i36.36
324706.32SLC6A15'protein_coding'416DEGain79.890N/ASLC6A15N/A
334736.31SF3B2'protein_coding'226AEGain7.895EU ER2a75.00
344866.26CIRBP'protein_coding'412AEGain10.665EU E2a_E3a25.00
354876.26ATP5J2'protein_coding'1021AEGain12.1110EU ES AB E2a_E3a37.50
364996.23CPNE1'protein_coding'3682AEGain13.7115EU AB CE I16_AR257.14
375226.16C20orf199'processed_transcript'810AEGain40.177EU ES E2a_E6a66.67
385436.09RPS14'protein_coding'38AEGain14.241EU E2a_E3a0
395536.04AC013403.3'processed_transcript'37AEGain15.511EU E1b_E2b0
405705.98C11orf10'protein_coding'14AEGain8.304EU E2a_E3a100.00
415965.90TSC22D4'protein_coding'617AEGain3.4212EU CE I1_AR260.00
425975.90CADM1'protein_coding'314AEGain9.872EU ES E7a_E9a100.00
436025.89EIF4B'protein_coding'520AEGain11.749EU AB E3_Da14.29
446235.83EEF1B2'protein_coding'1128AEGain6.2910EU ES AB E1c_E2b57.14
456365.80CDKN1A'protein_coding'716DEGain24.903EU AB CDKN1A0.00
466435.78KIAA1143'protein_coding'26AEGain7.695EU AB ER1b100.00
476525.76C14orf156'protein_coding'14AEGain8.615EU E2a_E3a75.00
486565.74C19orf53'protein_coding'13AEGain8.574EU E2a_E3a100.00
496585.73SSR2'protein_coding'1431AEGain9.156EU ES AB E2a_E4a0.00
506595.73RP11-367G6.1'pseudogene'24DEGain53.090N/ARP11-367G6.1N/A
516645.72DUSP4'protein_coding'514DEGain52.720N/ADUSP4N/A
526695.70DLGAP1'protein_coding'1128AEGain9.007EU ES AB ER3d60.00
536865.65BCCIP'protein_coding'716AEGain11.025EU E1a_E2b25.00
546965.62DULLARD'protein_coding'211AEGain10.821I1_SR10
557005.60MORF4L1'protein_coding'316AEGain7.867EU E7a_E8a66.67
567085.59TERF1'protein_coding'312AEGain8.106EU AB ER1c0.00
577115.58HOXC8'protein_coding'12DEGain47.710N/AHOXC8N/A
587195.56FAM135A'protein_coding'834AEGain7.515EU CE I3_AR1100.00
597205.56CYTSB'protein_coding'1030AEGain11.524EU ES AB CE E6a_E8a0.00
607225.55SNAP25'protein_coding'514AEGain7.978EU ES AB E4a_E10a66.67
617305.54C14orf2'protein_coding'25AEGain24.943EU ES E3a_E4a50.00
627335.53INCA1'protein_coding'29AEGain12.241CE I7_AR10
637355.53RPL27A'protein_coding'15AEGain7.984EU AB E3_Aa100.00
647505.46MTSS1L'protein_coding'217AEGain9.167EU AB IR ER15b66.67
657635.43CAMTA1'protein_coding'1961AEGain9.9416EU ES AB CE E3a_E4a36.36
667665.42BCAP29'protein_coding'1842AEGain15.336EU AB ER3a100.00
677795.40CEBPZ'protein_coding'320AEGain10.275ES AB E16_Aa0
687855.38UBE2L3'protein_coding'48AEGain10.282EU ES E3a_E6a0.00
697975.36ZNF397OS'protein_coding'418AEGain9.275EU AB ER12a0.00
707985.36TOMM7'protein_coding'714AEGain22.725EU ES AB ER3b33.33
717995.36DLEU2'processed_transcript'823AEGain33.505EU ES AB I7_SR10.00
728055.34AC008686.1'protein_coding'29AEGain6.195EU AB ER3a100.00
738085.33NDUFC1'protein_coding'311AEGain37.602EU ER7a0.00
748105.32ATP5I'protein_coding'14AEGain16.303EU E2a_E3a100.00
758165.32AC118282.5'protein_coding'23DEGain39.900N/AAC118282.5N/A
768195.31EGR1'protein_coding'25DEGain39.780N/AEGR1N/A
778225.31NT5C2'protein_coding'1641AEGain7.8411EU AB IR I16_AR125.00
788295.28RPS18'protein_coding'819AEGain6.965EU AB E3_Ad0.00
798345.28C6orf129'protein_coding'37AEGain4.755EU AB ER3a66.67
808455.24PRAF2'protein_coding'37AEGain7.092EU E1a_E2a100.00
818475.24FABP7'protein_coding'26DEGain37.731EU FABP70
828495.23COX6A1'protein_coding'13AEGain9.633EU ER2a100.00
838605.20MT2A'protein_coding'13AEGain2.342EU ER2a100.00
848735.17PHC1'protein_coding'319AEGain7.2110EU ES ER10a33.33
858755.17RABGGTB'protein_coding'1541AEGain14.1114EU AB ER2c44.44
868765.17FAM92A1'protein_coding'512AEGain16.196EU AB CE I7_AR80.00
878775.16ATP5E'protein_coding'37AEGain14.372EU ER2a100.00
888935.13UXT'protein_coding'514AEGain7.526EU CE I2_AR40.00
898965.13HDAC10'protein_coding'2465AEGain30.024EU ER10a66.67
909025.11PCK2'protein_coding'212DEGain34.540N/APCK2N/A
919095.10AC104438.1'pseudogene'12AEGain5.791EU ER1a0
929115.09S100B'protein_coding'36AEGain5.466EU ES E2a_E3a80.00
939175.07PFDN5'protein_coding'37AEGain7.967EU ER3a66.67
949205.07CTSK'protein_coding'414AEGain6.492EU E3a_E4a100.00
959385.03FBXL5'protein_coding'414AEGain6.727EU AB IR E2_Ab100.00
969824.95C16orf62'protein_coding'437AEGain4.861I31_SR30
979854.94PEX19'protein_coding'1026AEGain8.914EU AB E3a_E4a50.00
989864.94COX7C'protein_coding'13AEGain21.592EU E1a_E2a0.00
999894.94TMPRSS5'protein_coding'113AEGain6.865EU AB CE I8_AR20.00
1009924.93FRAS1'protein_coding'584DEGain30.560N/AFRAS1N/A
1019944.93FAU'protein_coding'39AEGain6.706EU AB E3_Da33.33
1029994.92PEX5'protein_coding'725AEGain6.532EU CE I11_AR10
10310084.91ZNF434'protein_coding'737AEGain8.9310EU ES AB IR ER13a0.00
10410094.90PRDX6'protein_coding'413AEGain6.787EU AB CE ENST0000047001775.00
10510164.89COX7A2'protein_coding'818AEGain15.259EU ER3e50.00
10610244.87C20orf111'protein_coding'27AEGain9.3711EU IR CE ER3a33.33
10710254.87GSTM3'protein_coding'517AEGain7.295EU ER3a50.00
10810264.87DUSP6'protein_coding'23DEGain29.211EU DUSP60
10910284.87HADHA'protein_coding'528AEGain6.555EU AB ER3a66.67
11010314.86USP40'protein_coding'1864AEGain6.8910EU ES AB ER29a50.00
11110354.86NUDC'protein_coding'518AEGain8.131ES E4a_E6a0
11210434.85ARRB2'protein_coding'420AEGain7.018EU ES ER3a85.71
11310464.84CDH6'protein_coding'112DEGain28.640N/ACDH6N/A
11410574.83NDUFB4'protein_coding'613AEGain9.4114EU AB IR E1a_E2b57.14
11510594.82UBTF'protein_coding'424AEGain6.312AB E3_Aa0
11610614.82AC119751.8'protein_coding'24DEGain28.270N/AAC119751.8N/A
11710704.81FUBP1'protein_coding'1746AEGain8.8030EU ES AB IR I538.46
11810734.80MAK16'protein_coding'110AEGain5.534EU E3a_E4a33.33
11910814.79ATP5G1'protein_coding'26AEGain8.475EU E3a_E4a25.00
12010854.79PPAP2C'protein_coding'38DEGain27.630N/APPAP2CN/A
12110894.78HSPB1'protein_coding'49AEGain6.093EU AB E1_Da0
12210934.78WDFY3'protein_coding'675AEGain6.338EU AB IR E68_Aa0.00
12310944.78PBX1'protein_coding'1334AEGain8.099EU ES AB IR ER2b20.00
12410964.78AC106045.2'pseudogene'14AEGain7.003EU AB ER2a0.00
12510994.77C1orf63'protein_coding'718AEGain5.356EU AB ER3a75.00
12611024.77AC215219.2'protein_coding'213AEGain6.814EU E5a_E6a33.33
12711064.76TACC1'protein_coding'926AEGain7.392EU AB E17b_E17c0
12811074.75CNIH4'protein_coding'818AEGain7.628EU ES AB E2a_E4a16.67
12911174.74HPCA'protein_coding'510AEGain5.003EU AB E5_Dc0.00
13011204.73NDUFB7'protein_coding'13AEGain8.091EU E1a_E2a0
13111244.73PAX2'protein_coding'822DEGain26.540N/APAX2N/A
13211274.72RPL36A'protein_coding'1021AEGain7.2714EU ES AB E2c_E3b50.00
13311304.72JPH4'protein_coding'311AEGain18.332EU ER7b0.00
13411344.71COX6C'protein_coding'14AEGain27.651EU E2a_E3a0
13511354.71FYN'protein_coding'1949AEGain2.376EU ES AB E12a_E14a0.00
13611384.71CPEB1'protein_coding'617AEGain3.323EU AB E4_Da100.00
13711444.70SFRS1'protein_coding'25AEGain7.8611EU AB IR CE I2_AR150.00
13811484.70SPRY1'protein_coding'24DEGain26.052EU CE SPRY10
13911564.69DAZAP2'protein_coding'713AEGain8.237EU AB E2a_E3a80.00
14011604.68AC015917.1'pseudogene'12AEGain6.652EU AB ER2a0
14111624.68MRPL33'protein_coding'819AEGain14.873EU ES E5a_E7b50.00
14211634.68LSM7'protein_coding'14AEGain5.532EU E3a_E4a100.00
14311804.66UTP6'protein_coding'527AEGain6.385EU ES AB IR E1a_E3a0.00
14411894.64DPYSL4'protein_coding'624AEGain5.374EU CE ER3b100.00
14511924.63VPS33A'protein_coding'113AEGain5.222EU E2a_E3a100.00
14611954.63NRCAM'protein_coding'2071AEGain5.8412EU ES AB IR ER42a16.67
14711964.63SHOX2'protein_coding'720DEGain24.780N/ASHOX2N/A
14811974.63AC090519.9'pseudogene'12AEGain6.222EU AB ER2a0
14912044.62TCEB2'protein_coding'410AEGain6.022EU ES E2a_E4a0.00
15012064.62SRGAP3'protein_coding'2065AEGain5.8121EU ES AB IR CE E3_Da11.11
15112104.61APH1A'protein_coding'1125AEGain12.214EU ER2c100.00
15212134.61AC010619.2'protein_coding'15AEGain6.143EU E4a_E5a50.00
15312174.60MFF'protein_coding'2456AEGain3.8012EU ES AB E3_Ad62.50
15412184.60RAN'protein_coding'619AEGain7.866EU AB E2b_E3a25.00
15512214.60COL5A2'protein_coding'459DEGain24.257EU COL5A20.00
15612224.60OAZ1'protein_coding'16AEGain11.316EU ES AB E1a_E4a75.00
15712244.60ATP6V0A1'protein_coding'324AEGain7.973EU ES E17a_E20a0.00
15812254.59MPRIP'protein_coding'1441AEGain5.4714EU ES AB IR CE ER9b28.57
15912394.58DDX12'protein_coding'434AEGain5.714EU CE ER11a0.00
16012404.58CLDN12'protein_coding'1743AEGain10.216EU ES AB IR ER5b50.00
16112424.58CPNE4'protein_coding'323DEGain23.850N/ACPNE4N/A
16212484.57TUT1'protein_coding'1241AEGain7.344EU E9d_E10a33.33
16312494.57PMF1'protein_coding'927AEGain5.475EU ES CE E1a_E6a33.33
16412594.55RPL34'protein_coding'49AEGain5.774EU E3a_E4a66.67
16512614.55PAAF1'protein_coding'213AEGain13.835EU AB IR I20.00
16612624.55AC094107.1'lincRNA'12AEGain7.052CE I1_AR20
16712684.54TMEM161B'protein_coding'214AEGain12.032EU E2a_E3a100.00
16812714.54PPAN'protein_coding'1033AEGain6.277EU AB E2_Ac0.00
16912784.52PSMB1'protein_coding'311AEGain5.972EU E1a_E2b0.00
17012834.52CSTB'protein_coding'25AEGain9.338EU AB CE E2a_E2b100.00
17112894.51SNAPIN'protein_coding'410AEGain7.942EU E1a_E1e0.00
17212984.50C16orf5'protein_coding'310AEGain4.993EU CE E2a_E3a100.00
17313034.49MAP3K13'protein_coding'1643AEGain7.626EU AB E2a_E3a75.00
17413094.48TMEM87A'protein_coding'323AEGain5.201EU E1a_E2a0
17513124.48SF3B1'protein_coding'1351AEGain5.7710EU AB ER2c42.86
17613194.46HOXC10'protein_coding'12DEGain22.060N/AHOXC10N/A
17713204.46NEFL'protein_coding'310DEGain22.000N/ANEFLN/A
17813214.46PKIG'protein_coding'916AEGain4.452EU AB ER9a0
17913244.46GAS2L3'protein_coding'18DEGain21.950N/AGAS2L3N/A
18013264.45NDUFB11'protein_coding'38AEGain5.817EU AB ER2b80.00
18113274.45SSU_rRNA_5'rRNA'11DEGain21.920N/ASSU_rRNA_5N/A
18213314.45CD68'protein_coding'210AEGain2.435EU AB E4_Aa0.00
18313344.45BOLA1'protein_coding'410AEGain7.814EU AB ER1a50.00
18413444.44COPA'protein_coding'745AEGain5.967EU ER2a33.33
18513464.43NASP'protein_coding'1235AEGain12.999EU ES AB ER3b50.00
18613534.43SNRPC'protein_coding'411AEGain4.925EU E3a_E4a75.00
18713604.42CDK6'protein_coding'516DEGain21.440N/ACDK6N/A
18813704.41C14orf159'protein_coding'921AEGain5.068EU ES AB E7a_E8a50.00
18913724.40GSTZ1'protein_coding'514AEGain5.393EU E4a_E5a100.00
19013754.40ANKFY1'protein_coding'226AEGain5.103EU AB E14_Da0.00
19113784.39USP8'protein_coding'632AEGain5.627EU AB CE I22_AR233.33
19213804.39PGRMC2'protein_coding'37AEGain8.982EU ER1c100.00
19313824.39ATP5H'protein_coding'26AEGain23.864EU E2a_E3a66.67
19413864.38ARHGEF6'protein_coding'324AEGain5.263EU ES E17a_E20a100.00
19513894.38NUDT4'protein_coding'26AEGain3.553EU E1a_E2a0.00
19613904.38LHFPL3'protein_coding'38AEGain5.252EU ES ENST000004019700.00
19713944.37PARP2'protein_coding'320AEGain13.548EU AB IR ENST0000025041633.33
19813954.37FNTB'protein_coding'421AEGain4.006EU ES AB E2a_E6a75.00
19913964.37AC090519.7'pseudogene'13AEGain4.453EU AB ER3a0.00
20014074.35CTNNBIP1'protein_coding'513AEGain4.463EU ER7a100.00
20114104.35IGF2BP2'protein_coding'1137DEGain20.320N/AIGF2BP2N/A
20214164.34DHCR7'protein_coding'211DEGain11.094EU AB DHCR7100.00
20314184.34CCDC72'protein_coding'410AEGain11.494EU E1c_E2b33.33
20414224.33HACL1'protein_coding'1335AEGain6.458EU AB E1a_E2a40.00
20514284.33MAPK8IP3'protein_coding'234AEGain5.051ES E8a_E11a0
20614354.32RP11-884K10.1'protein_coding'515AEGain5.837EU AB E3b_E4a60.00
20714374.32MAP4'protein_coding'2365AEGain5.859EU ES AB E10_Dd60.00
20814404.31RP1-21O18.1'protein_coding'1030AEGain2.5131EU AB IR CE E9_Db78.57
20914414.31HUS1'protein_coding'1131AEGain6.016EU AB IR ER12a0
21014454.30AC116340.1'rRNA_pseudogene'11DEGain19.750N/AAC116340.1N/A
21114484.30TTC35'protein_coding'111AEGain6.625EU CE E2a_E3a33.33
21214544.29ATF4'protein_coding'37AEGain18.531EU E2a_E2c0
21314594.29BSDC1'protein_coding'1336AEGain4.684EU E2a_E3a100.00
21414624.29WTAP'protein_coding'516AEGain5.059EU AB IR I6_AR40
21514684.28CREB3L1'protein_coding'212DEGain19.460N/ACREB3L1N/A
21614704.28USP10'protein_coding'316AEGain4.937EU ES E3a_E4a50.00
21714774.28CHCHD7'protein_coding'58AEGain5.582EU ER2b100.00
21814784.28MAT2A'protein_coding'1439AEGain2.765EU ES AB ER1g100.00
21914854.27ZEB2'protein_coding'2858AEGain3.175EU I9_SR266.67
22014874.27CXXC4'protein_coding'411AEGain3.872EU E1a_E2a100.00
22114894.26COPS4'protein_coding'110AEGain5.203EU E2a_E3a50.00
22214914.26ST13'protein_coding'623AEGain4.957EU ES AB E1a_E3a40.00
22314974.25TRIB2'protein_coding'48DEGain19.071EU TRIB20
22415004.25C1S'protein_coding'1858AEGain4.339EU AB ER11e28.57
22515054.25SHISA5'protein_coding'1944AEGain4.968EU AB E9_Da40.00
22615064.25SLAIN1'protein_coding'2042AEGain5.554EU AB ER1b0.00
22715094.25RPL26'protein_coding'27AEGain15.714EU E2a_E3a33.33
22815104.25RPS25'protein_coding'15AEGain12.114EU E2a_E3a33.33
22915184.24TTBK1'protein_coding'322AEGain3.061AB E10_Aa0
23015224.24EYA4'protein_coding'931DEGain18.870N/AEYA4N/A
23115264.23TXNDC11'protein_coding'423AEGain5.035EU AB ER10a50.00
23215284.23AC138951.5'protein_coding'39AEGain2.823EU AB ER3a0.00
23315294.23KRTCAP2'protein_coding'1226AEGain5.4618EU AB E2d_E2m58.33
23415374.23CASP3'protein_coding'620AEGain13.155EU ES ER1c75.00
23515434.22NDUFA11'protein_coding'38AEGain5.596EU AB CE E1a_E2a33.33
23615444.22TMEM116'protein_coding'315AEGain8.633EU ES ER2a100.00
23715484.22HSPA9'protein_coding'117AEGain11.033EU E1a_E2a100.00
23815504.22CLDND1'protein_coding'710AEGain5.653EU ES E1a_E4a50.00
23915514.22HNRNPAB'protein_coding'312AEGain5.285EU AB E2_Ab66.67
24015564.21AC022098.2'protein_coding'112AEGain5.911EU ER4a0
24115584.21MATR3'protein_coding'525AEGain5.735EU ES ER4a50.00
24215604.21MYL6'protein_coding'27AEGain4.054EU E3a_E4a100.00
24315634.21AKAP8L'protein_coding'215AEGain7.485EU E4a_E5a75.00
24415674.20C14orf118'protein_coding'416AEGain5.354EU AB I10_SR20
24515714.20LGALS3BP'protein_coding'312AEGain3.091EU E2a_E3a0
24615724.20COPS8'protein_coding'928AEGain3.884EU ES AB ER2a50.00
24715754.20NPNT'protein_coding'414DEGain18.350N/ANPNTN/A
24815784.20SCN3A'protein_coding'945AEGain2.4511EU AB IR E20a_E21a40.00
24915824.19BAI3'protein_coding'234AEGain5.251CE I3_AR340
25015874.19SEC61G'protein_coding'717AEGain20.153EU E3a_E4a50.00
25115974.17SRPRB'protein_coding'619AEGain12.505EU AB E2a_E3b0.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.51C7orf46'protein_coding'821AELoss-160.8922EU ES AB IR E3_Da57.14
2214.48AP000692.1'processed_transcript'12AELoss-546.823EU AB E1a_E2a0
3314.27AASS'protein_coding'739AELoss-289.289EU AB IR CE E24_Dc50.00
4413.90CHEK2'protein_coding'3065AELoss-404.4012EU ES AB E11b_E23b33.33
5513.85RP1-12G14.4'pseudogene'22AELoss-2495.362AB E1_Ab0
6613.59AC133435.2'lincRNA'12AELoss-2177.723EU AB E1a_E2a0
7713.56ST3GAL5'protein_coding'1535AELoss-205.855EU AB E17_Aa0.00
8813.18GTPBP5'protein_coding'1330AELoss-393.2425EU ES AB E3_Db47.37
9913.15C19orf29'protein_coding'422AELoss-292.6511EU AB E4_Aa50.00
101013.06AIFM1'protein_coding'624AELoss-227.642EU AB E11_Aa0
111112.66AC007216.1'pseudogene'13AELoss-283.075EU AB E2a_E3a0.00
121212.65MORC2'protein_coding'638AELoss-97.604EU ES AB E2_Da100.00
131312.55SLC25A15'protein_coding'720AELoss-122.902EU AB E9_Aa0
141412.35FAM116A'protein_coding'938AELoss-223.895EU ES AB CE E21_Ab0.00
151512.25PQLC2'protein_coding'923AELoss-96.015EU AB E10_Aa66.67
161612.23ZNF283'protein_coding'942AELoss-187.3011EU ES AB CE E17_Db0.00
171911.79LIMK1'protein_coding'931AELoss-98.995EU AB E16_Aa50.00
182011.59CYB561D1'protein_coding'815AELoss-176.962AB E2_Db0
192111.52TMEM104'protein_coding'213AELoss-61.855EU ES AB CE E3_Da100.00
202211.39DOCK4'protein_coding'2187AELoss-127.732AB E51_Aa0
212311.26C17orf45'protein_coding'2044AELoss-351.6920EU AB ER2j50.00
222411.22CHCHD2'protein_coding'26AELoss-200.134EU AB E1_Ab100.00
232511.13AC128648.1'protein_coding'18AELoss-576.907EU AB E2a_E3a66.67
242611.13MLL3'protein_coding'1899AELoss-162.0515EU AB IR CE E62a_E63a66.67
252711.04AKT2'protein_coding'2672AELoss-67.4514EU ES AB E9_Aa0.00
262811.02FIS1'protein_coding'919AELoss-513.656EU ES AB E5_Aa33.33
272910.90SLC25A17'protein_coding'1644AELoss-124.076EU AB CE E3_Da50.00
283010.90MAP2K2'protein_coding'826AELoss-126.964EU AB E7a_E7c50.00
293110.86AC034193.2'lincRNA'12AELoss-95.012AB E1_Da0
303210.84AC005197.3'protein_coding'12AELoss-120.222AB E1_Da0
313310.83EIF4A2'protein_coding'2961AELoss-115.6416EU AB E2_Dg33.33
323410.75RWDD2B'protein_coding'718AELoss-88.256EU ES AB E2_Da50.00
333510.73C9orf80'protein_coding'720AELoss-116.5510EU ES AB E3_Db50.00
343610.69STRBP'protein_coding'1042AELoss-100.834EU AB E2_Aa0
353710.64PHACTR4'protein_coding'729AELoss-119.108EU ES AB E19_Dc40.00
363810.64OGT'protein_coding'1246AELoss-92.416EU AB E4_Da0.00
373910.64PTPRZ1'protein_coding'1255AELoss-76.8411EU ES AB E16_Ad16.67
384010.63DHTKD1'protein_coding'627AELoss-121.943EU AB E16_Db0
394110.63AL356970.1'pseudogene'12AELoss-54.813EU AB E1a_E2a0
404210.62PANK1'protein_coding'720AELoss-74.982EU AB E4_Da0
414310.61C21orf58'protein_coding'1331AELoss-100.284EU AB E9_Dd0
424410.56AL138795.6'protein_coding'212AELoss-77.839EU AB E8_Da0
434510.53FAM73A'protein_coding'422AELoss-107.9710EU ES AB E10f_E11a42.86
444610.50MSH5'protein_coding'2878AELoss-383.8814EU ES AB CE E15a_E16a33.33
454910.41NMNAT1'protein_coding'615AELoss-47.1912EU AB ENST0000046268675.00
465210.37ELK4'protein_coding'38AELoss-81.991AB E2_Da0
475310.35CEP55'protein_coding'519AELoss-89.751AB E8_Dd0
485410.32IDH1'protein_coding'1338AELoss-27.7210EU ES AB CE E2_Aa75.00
495510.32CHN2'protein_coding'2664AELoss-72.3640EU ES AB E7_Aa48.28
505610.22PHC3'protein_coding'2459AELoss-84.6911EU ES AB E6_Da25.00
515710.19RP5-826L7.1'processed_transcript'12AELoss-92.463EU AB E2_Aa0
525810.18SNRNP25'protein_coding'719AELoss-82.008EU AB E2_Aa60.00
535910.17CXorf57'protein_coding'726AELoss-58.933AB E9_Aa0
546010.08AC087742.1'lincRNA'16AELoss-112.858EU AB IR E1a_E2a100.00
556110.08MKRN1'protein_coding'1644AELoss-52.967EU ES AB E9_Aa100.00
566210.03MDM2'protein_coding'2236AELoss-32.985EU AB ER14c100.00
576310.03FARP1'protein_coding'839AELoss-261.063EU AB E20_Aa0
586410.03RP11-179H18.3'processed_transcript'12AELoss-98.451AB E1_Da0
596510.02AC118282.2'protein_coding'24AELoss-5.563EU AB E1a_E2b100.00
60679.94CROCCL1'processed_transcript'420AELoss-94.825EU ES AB E11_Db0.00
61689.90THOC7'protein_coding'822AELoss-44.564EU AB E2_Aa100.00
62699.89AC121253.1'protein_coding'46AELoss-53.904EU AB E1_Dd0
63709.86SLC2A11'protein_coding'3070AELoss-78.6218EU ES AB E13_Df50.00
64719.86TOP2A'protein_coding'557AELoss-40.219EU AB E19_Da20.00
65729.72C10orf18'protein_coding'1239AELoss-72.7312EU AB E23_Db33.33
66739.69NHP2L1'protein_coding'1022AELoss-39.444EU AB E8_Dc100.00
67749.69ZNF425'protein_coding'512AELoss-75.783EU AB E5_Ab0
68759.69PRPF3'protein_coding'829AELoss-350.892AB E14_Aa0
69769.66RPL23A'protein_coding'718AELoss-26.7517EU ES AB IR CE E1a_E4b28.57
70789.64CD46'protein_coding'2736AELoss-37.739EU AB E5_Ae25.00
71799.60ACTA2'protein_coding'717AELoss-59.114EU AB E4_Db50.00
72809.55TNRC18'protein_coding'1565AELoss-39.778EU AB E25_Da0
73819.55AC012652.5'lincRNA'13AELoss-224.612EU AB E2a_E3a0
74829.55AL136180.1'protein_coding'12AELoss-73.851AB E2_Aa0
75839.52NUDT1'protein_coding'1320AELoss-46.693EU ES AB E4_Da100.00
76849.51ARMC10'protein_coding'1024AELoss-86.6310EU AB E9_Aa100.00
77859.48TTF2'protein_coding'841AELoss-54.276EU AB E11_Aa50.00
78869.48C1orf151'protein_coding'1128AELoss-52.1517EU AB IR E3_Aa57.14
79879.47MLC1'protein_coding'722AELoss-59.066EU ES E7a_E9a20.00
80889.44CDC16'protein_coding'1237AELoss-52.486EU AB E18_Aa66.67
81899.43TAF13'protein_coding'27AELoss-42.035EU AB E5_Aa50.00
82909.42DHX34'protein_coding'633AELoss-195.811AB E15_Aa0
83919.39HNRNPC'protein_coding'818AELoss-72.319EU ES AB E2_Da25.00
84929.37MRPS18B'protein_coding'513AELoss-92.095EU AB E2_Dd33.33
85939.37KIAA1704'protein_coding'824AELoss-54.789EU ES AB E13_Aa0.00
86949.36TMEM111'protein_coding'517AELoss-68.563EU AB E2_Aa0
87959.35SEPT2'protein_coding'47102AELoss-348.625EU ES AB E12_Da50.00
88969.34MLLT6'protein_coding'1038AELoss-249.652AB E13_Db0
89979.34FAT3'protein_coding'534AELoss-3.708EU ES AB E3_Aa66.67
90989.34VCAN'protein_coding'518AELoss-53.1911EU AB IR CE E13a_E14a0
91999.25C22orf25'protein_coding'2757AELoss-50.5911EU AB E6_Db20.00
921009.23HMGN1'protein_coding'2146AELoss-39.377EU AB ER5j0.00
931019.22SEPT7'protein_coding'1433AELoss-44.694EU ES AB E1b_E5a50.00
941039.21PDHB'protein_coding'1034AELoss-49.576EU AB E1_Dg33.33
951049.17CD74'protein_coding'310DELoss-574.150N/ACD74N/A
961059.16AC010733.5'processed_transcript'12AELoss-63.501AB E2_Aa0
971069.14RNF121'protein_coding'418AELoss-37.843EU AB E4_Aa0.00
981079.10P4HB'protein_coding'1541AELoss-35.237EU ES AB E8a_E8c0.00
991089.09CHCHD9'protein_coding'22AELoss-52.711AB E1_Da0
1001099.08C4orf36'protein_coding'313AELoss-50.353AB E9_Dc0
1011109.05NDUFS2'protein_coding'1545AELoss-47.139EU ES AB E13_Aa25.00
1021119.03ANO10'protein_coding'1952AELoss-59.9015EU ES AB E4_Ab40.00
1031128.99AIMP2'protein_coding'412AELoss-33.713EU ES AB E3_Aa100.00
1041148.97RPL7A'protein_coding'1127AELoss-230.368EU AB E2_Ab16.67
1051158.96AC004540.1'processed_transcript'822AELoss-22.707EU AB E6_Da50.00
1061168.94AC007620.1'processed_transcript'12AELoss-60.651AB E1_Da0
1071178.94RP11-3J10.3'pseudogene'23AELoss-61.542EU AB ENST000003965190
1081188.92CNOT10'protein_coding'1952AELoss-170.5314EU ES AB E21_Ab16.67
1091198.91PSIP1'protein_coding'1134AELoss-38.371EU E9a_E10a0
1101218.88GPR17'protein_coding'713DELoss-469.620N/AGPR17N/A
1111228.85EIF2B3'protein_coding'1131AELoss-52.849EU ES AB E8_Db0.00
1121238.85AC009065.2'lincRNA'12AELoss-59.134EU AB IR E1a_E2a0
1131248.84ZNF137'protein_coding'716AELoss-53.427EU AB E4_Aa0
1141258.84WDR32'protein_coding'514AELoss-33.422AB E8_Db0
1151268.82BMS1P1'pseudogene'316AELoss-80.906EU AB E9_Aa75.00
1161278.72PKD1'protein_coding'26115AELoss-137.7716EU AB E28_Db16.67
1171288.69HN1'protein_coding'1224AELoss-51.7610EU ES AB ER8d40.00
1181298.69AGRN'protein_coding'1054AELoss-40.438EU AB E25_Aa50.00
1191308.68EIF4G3'protein_coding'1663AELoss-45.9612EU ES AB CE E4_Aa33.33
1201318.68HMGB1'protein_coding'1227AELoss-140.3118EU ES AB IR E6b_E7b33.33
1211328.66ACSS2'protein_coding'2770AELoss-33.2910EU AB IR E9_Aa0.00
1221338.65ING4'protein_coding'2346AELoss-178.838EU ES AB E4_Aa50.00
1231348.65AC007390.4'protein_coding'718AELoss-26.594EU AB E7_Ad100.00
1241358.64RAB7A'protein_coding'1026AELoss-163.467EU AB E5b_E5c50.00
1251368.64DLL3'protein_coding'210AELoss-30.583EU AB E4a_E5a0
1261378.63TRAPPC2'protein_coding'819AELoss-52.656EU ES AB E5a_E5b33.33
1271388.63ETV5'protein_coding'1439AELoss-34.444EU ES AB E8_Db0.00
1281398.62C7orf44'protein_coding'2047AELoss-128.7812EU ES AB CE E11_Df0.00
1291418.61AC026271.1'processed_transcript'210AELoss-40.673EU AB E8_Aa0
1301428.57AC073940.1'pseudogene'12AELoss-130.613EU AB E2_Aa0
1311438.49POLR2B'protein_coding'1347AELoss-45.017EU AB IR E3_Ab50.00
1321448.48AKR1B1'protein_coding'1641AELoss-124.3612EU AB E5_Ab25.00
1331458.47H6PD'protein_coding'27AELoss-127.922AB E5_Ac0
1341468.44UBE2V1'protein_coding'2142AELoss-47.1213EU ES AB ER14b0.00
1351478.44ARIH2'protein_coding'3576AELoss-45.2125EU ES AB E5_Dd69.23
1361488.42RABGEF1'protein_coding'1028AELoss-32.369EU AB IR E9a_E10a0.00
1371498.41SON'protein_coding'2558AELoss-42.759EU AB E3_Da20.00
1381508.41ABHD14A'protein_coding'1140AELoss-146.092AB E5_Ab0
1391518.40AC133555.1'protein_coding'14AELoss-182.503EU AB E3a_E4a0
1401528.40PPP2R4'protein_coding'2754AELoss-20.906EU ES AB E5_Ab66.67
1411538.40HK1'protein_coding'2460AELoss-23.565EU AB E6_Aa0
1421548.38RPL13P5'processed_transcript'511AELoss-32.612AB E4_Ac0
1431558.37CCDC12'protein_coding'925AELoss-45.285EU AB E4_Db33.33
1441568.36RP11-236F9.2'protein_coding'311AELoss-21.597EU ES ER3a83.33
1451588.34GSDMB'protein_coding'1428AELoss-32.0010EU AB E2_Ad25.00
1461598.33AP000662.1'lincRNA'12AELoss-45.283EU AB E1_Da0
1471608.31AL590714.1'protein_coding'15AELoss-46.595EU AB IR CE E1a_E2a0
1481618.31GFAP'protein_coding'411DELoss-316.362EU GFAP0.00
1491628.28MAP3K7IP2'protein_coding'619AELoss-123.973ES AB E5_Aa0
1501638.28CIDECP'processed_transcript'713AELoss-30.311AB E4_Aa0
1511648.26HLA-B'protein_coding'1029AELoss-45.1216EU ES AB E1f_E1o30.00
1521658.25PPIL2'protein_coding'1658AELoss-14.0629EU AB IR E8_Da28.57
1531668.24AC002094.4'pseudogene'13AELoss-25.152EU AB E2a_E3a0
1541678.22NPL'protein_coding'1540AELoss-41.874AB E8_Da0
1551688.22RANBP2'protein_coding'1149AELoss-110.362AB E13_Dc0
1561698.21AL354696.3'lincRNA'12AELoss-125.622AB E1_Da0
1571708.20HLA-H'pseudogene'17AELoss-15.842EU E2a_E3a0.00
1581728.19CCNL2'protein_coding'2158AELoss-22.794EU AB E9_Da0
1591738.19CYP20A1'protein_coding'1443AELoss-82.728EU ES AB CE E7a_E10a33.33
1601748.19MGST3'protein_coding'1431AELoss-43.3312EU ES AB E1_Ag33.33
1611758.14SLC27A1'protein_coding'418AELoss-21.702EU AB E8_Aa0
1621768.13IPP'protein_coding'517AELoss-23.734ES AB E11_Aa0
1631778.13DBR1'protein_coding'414AELoss-42.572EU AB E4_Da0
1641788.12HEATR3'protein_coding'620AELoss-38.133EU AB E13_Ab0.00
1651798.12PSME2'protein_coding'418AELoss-34.914EU ES AB E5a_E6c0.00
1661808.11RETSAT'protein_coding'1030AELoss-37.315EU AB E6_Da0
1671818.10KLHDC8A'protein_coding'414AELoss-10.033EU AB E9_Da0
1681828.09AFG3L1'processed_transcript'1841AELoss-100.433EU AB E2_Dc0
1691838.08GNL3L'protein_coding'530AELoss-55.798EU ES AB E19e_E19d80.00
1701848.06GTF2I'protein_coding'2170AELoss-41.3619EU ES AB E28a_E29a20.00
1711858.06NRSN2'protein_coding'514AELoss-20.502AB E6_Db0
1721868.04CC2D1A'protein_coding'535AELoss-25.815EU ES AB E24_Aa0.00
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