Summary page for comparison: 'DLBCL_vs_BCell3' (HS0640_vs_HS1044) - Project: Lymphoma


Download complete candidate list as tab delimited text file: DLBCL_vs_BCell3.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 10,920 (of 36,953 possible genes)

DE Genes: 6,871

AE Genes: 7,521

Alternative Exon Usage (EU) Genes: 6,420

Alernative Exon Skipping (ES) Genes: 1,045

Alternative Exon Boundary (AB) Genes: 2,673

Intron Retention (IR) Genes: 517

Cryptic Exon (CE) Genes: 999


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.44RPL7'protein_coding'517AELoss-433.6422EU AB IR ER7a80.00
2215.26HLA-DRB1'protein_coding'16AELoss-1411.672EU E2a_E3a100.00
3313.84BRE'protein_coding'721AELoss-1220.119EU AB CE I1_AR1100.00
4412.34IGHG4'IG_C_gene'29AELoss-125.015EU AB IR I4_AR10.00
5511.81RPL37'protein_coding'28AELoss-1287.217EU ES AB ER2b80.00
6611.32SCP2'protein_coding'521AELoss-42.108EU CE I12_AR1100.00
7711.06HLA-DRB5'protein_coding'27AEGain94.442EU E3a_E4a0.00
8810.94HLA-DQA1'protein_coding'411AEGain622.239EU AB E4_Ac20.00
9910.91RPL28'protein_coding'15AELoss-3152.396EU AB ER3a50.00
101010.73RPL23A'protein_coding'39AELoss-412.844EU ER4a100.00
111110.72HLA-DQB1'protein_coding'817AELoss-100.354EU ES AB E6a_E9a0.00
121210.56FNIP1'protein_coding'320AELoss-59.9812EU ES AB CE I15_AR133.33
131310.44HLA-DPB1'protein_coding'818AELoss-61.676EU ES AB E8b_E9a33.33
141410.21HLA-A'protein_coding'723AEGain600.156EU AB E8b_E9a33.33
15159.90HIF1A'protein_coding'418AELoss-54.751I12_SR20
16169.73H3F3A'protein_coding'411AELoss-31.977EU AB E2a_E3b33.33
17179.60SEPP1'protein_coding'14DEGain774.040N/ASEPP1N/A
18189.56PCNP'protein_coding'25AELoss-45.123EU CE I1_SR10
19199.53SMC4'protein_coding'429AELoss-80.4213EU AB CE I5_AR470.00
20209.51PLA2G2D'protein_coding'14DEGain195.172EU PLA2G2D100.00
21219.44CXCL9'protein_coding'14DEGain695.890N/ACXCL9N/A
22229.33RAB3GAP2'protein_coding'239AELoss-34.0814EU AB IR I27_AR170.00
23239.10APOE'protein_coding'14DEGain547.262EU APOE0.00
24249.02LYZ'protein_coding'14DEGain148.724EU LYZ33.33
25258.97HLA-DQB2'protein_coding'49AEGain6.633EU E1a_E2a0.00
26268.94TAOK3'protein_coding'225AELoss-69.9719EU CE I3_AR581.82
27278.90SNX6'protein_coding'420AELoss-24.2712EU CE I11_AR290.00
28288.90RPL9'protein_coding'18AEGain4.589EU AB IR E7_Da50.00
29298.89PRPF18'protein_coding'419AELoss-188.748EU ES AB E3_Da40.00
30308.87KIAA1033'protein_coding'234AELoss-7.2516EU AB ENST0000031131757.14
31318.79AHSA2'protein_coding'723AELoss-11.3521EU ES AB IR CE E11_Db20.00
32328.78ANKRD17'protein_coding'344AELoss-21.005EU CE I1_AR6100.00
33338.76LUM'protein_coding'13DEGain434.160N/ALUMN/A
34348.72AC004448.3'pseudogene'12AELoss-7.335EU AB E2_Aa100.00
35358.70IL6ST'protein_coding'1029AELoss-3.615EU AB CE I18_AR40.00
36368.65AHR'protein_coding'213AELoss-35.824EU AB IR I11_SR10
37378.65RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.071EU E3a_E4a0
38388.58IFITM2'protein_coding'27AELoss-25.032EU AB E1c_E2a0
39398.54AC112777.7'rRNA_pseudogene'11DELoss-373.200N/AAC112777.7N/A
40408.52CCL19'protein_coding'26DEGain367.280N/ACCL19N/A
41418.49SPARC'protein_coding'110DEGain359.012EU SPARC0.00
42428.46FAM172A'protein_coding'213AELoss-26.9411EU CE I10_AR2133.33
43438.46EIF4E'protein_coding'29AELoss-31.813EU E5a_E6a50.00
44448.45SC-9C5.12'protein_coding'35AEGain5.7717EU ES AB IR I1_SR150.00
45458.44FAM126B'protein_coding'112AELoss-25.023EU CE I1_SR30
46468.37AL163011.3'rRNA_pseudogene'11DELoss-331.340N/AAL163011.3N/A
47478.35FOSB'protein_coding'14DELoss-326.282EU AB FOSB0
48488.29TBC1D4'protein_coding'221AELoss-17.8429EU AB CE ER9a91.30
49498.28ENPP2'protein_coding'226DEGain310.860N/AENPP2N/A
50508.25C7orf28A'protein_coding'115AEGain35.167EU AB E8a_E9a20.00
51518.22AC091982.3'pseudogene'12AELoss-34.541AB E2_Aa0
52528.21SLC40A1'protein_coding'18DEGain295.800N/ASLC40A1N/A
53538.12FER'protein_coding'120AELoss-32.266EU CE I2_AR275.00
54548.10IGHD'IG_C_gene'27DELoss-274.160N/AIGHDN/A
55558.03ITGB7'protein_coding'216AEGain19.237EU AB IR I4_SR1100.00
56568.02BGN'protein_coding'211DEGain259.430N/ABGNN/A
57577.99EXOSC8'protein_coding'315AEGain27.616EU AB IR E4_Da100.00
58587.98MGST3'protein_coding'717AELoss-11.212EU ER10a0.00
59597.98MMP9'protein_coding'113DEGain251.913EU MMP90.00
60607.97FN1'protein_coding'1050DEGain250.980N/AFN1N/A
61617.95DENND4A'protein_coding'132AELoss-27.4815EU IR I19_SR266.67
62627.91ESNA1'protein_coding'522AELoss-28.395EU CE I12_AR10.00
63637.90CCDC144B'protein_coding'221AELoss-20.764AB IR CE I70
64647.89HIST1H2AC'protein_coding'35AELoss-13.124EU AB E3_Aa0.00
65657.82APOC1'protein_coding'15DEGain226.424EU APOC133.33
66667.79COL3A1'protein_coding'254DEGain221.710N/ACOL3A1N/A
67677.79C1orf71'protein_coding'315AELoss-18.581CE I2_AR10
68687.79VPS53'protein_coding'326AELoss-35.262CE I5_AR10
69697.78AC010970.2'processed_pseudogene'11DELoss-219.860N/AAC010970.2N/A
70707.78AC004866.1'rRNA_pseudogene'11DELoss-219.380N/AAC004866.1N/A
71717.77IL18'protein_coding'16DEGain74.296EU IL1880.00
72727.77COL1A2'protein_coding'254DEGain217.960N/ACOL1A2N/A
73737.75TRAPPC10'protein_coding'224AELoss-20.684EU CE I3_SR10
74747.74ZMAT1'protein_coding'212AELoss-2.105EU CE ER2a0.00
75757.74TM9SF3'protein_coding'115AELoss-12.358EU I4_SR1100.00
76767.74A2M'protein_coding'240DEGain213.280N/AA2MN/A
77777.74TMEM119'protein_coding'25AELoss-2.512EU AB E2_Ab0
78787.72TIMP3'protein_coding'28DEGain211.510N/ATIMP3N/A
79797.72GOLGA3'protein_coding'124AELoss-78.9310EU AB IR CE I1_AR240.00
80807.72DDX17'protein_coding'519AEGain88.668EU AB IR ER11b100.00
81817.71IGFBP7'protein_coding'15DEGain209.920N/AIGFBP7N/A
82827.67ERBB2IP'protein_coding'628AELoss-11.3232EU ES CE E22a_E23a76.67
83837.67PPP3CC'protein_coding'314AEGain23.224EU ES CE I12_AR90.00
84847.65A2LD1'protein_coding'25AELoss-20.222AB CE I2_AR100
85857.63CD3E'protein_coding'212DEGain68.764EU ES CD3E66.67
86867.62PPP2R5C'protein_coding'418AELoss-33.917EU ES CE I4_AR13100.00
87877.61C3'protein_coding'141DEGain194.9313EU C341.67
88887.60NAPEPLD'protein_coding'16AELoss-11.784EU I1_SR40.00
89897.60C1QB'protein_coding'13DEGain193.890N/AC1QBN/A
90907.59CWC15'protein_coding'18AELoss-29.903EU E6a_E7a0.00
91917.58MGEA5'protein_coding'318AELoss-19.817EU IR CE I9_AR10
92927.58IGHE'IG_C_gene'211DEGain190.803EU AB CE IGHE0
93937.53U66059.1'IG_V_gene'12DEGain185.180N/AU66059.1N/A
94947.53FOLR2'protein_coding'212AEGain94.6016EU AB ER3d75.00
95957.48GZMK'protein_coding'15DEGain178.320N/AGZMKN/A
96967.44COL1A1'protein_coding'151DEGain173.5216EU COL1A16.67
97977.43CCL18'protein_coding'13DEGain172.250N/ACCL18N/A
98987.39IKZF2'protein_coding'616AELoss-7.105EU AB E1_Da0.00
99997.39SERPING1'protein_coding'617DEGain167.870N/ASERPING1N/A
1001007.38C1QC'protein_coding'37DEGain166.240N/AC1QCN/A
1011017.36IGHV4-31'IG_C_gene'27AEGain3.513EU E4a_E5a0.00
1021027.36TMEM66'protein_coding'16AELoss-22.441CE I1_AR20
1031037.35DMTF1'protein_coding'323AELoss-10.9119EU ES AB IR CE I5_AR125.00
1041047.35TCTN1'protein_coding'827AELoss-2.3923EU ES AB CE E3_Aa58.82
1051057.34SSU_rRNA_5'rRNA'11DELoss-161.670N/ASSU_rRNA_5N/A
1061067.33SNX9'protein_coding'220AELoss-16.672EU CE I5_AR90
1071077.32AAAS'protein_coding'217AEGain13.106EU AB IR I1100.00
1081087.24RERE'protein_coding'427AEGain15.9224EU ES AB CE E14_Aa75.00
1091097.23POSTN'protein_coding'524DEGain150.570N/APOSTNN/A
1101107.21CCL21'protein_coding'26DEGain147.772EU CCL210.00
1111117.19ADAM10'protein_coding'426AELoss-12.4611EU ES AB CE I4_AR128.57
1121127.18WDR68'protein_coding'18AELoss-27.594EU E5a_E6a66.67
1131137.17AFF4'protein_coding'427AELoss-13.764EU ES AB CE I1_AR1100.00
1141147.17ANKRD11'protein_coding'622AELoss-17.335EU AB IR CE I2_SR20
1151157.16RB1'protein_coding'127AELoss-10.2013EU CE I1_AR660.00
1161167.15CTSL1'protein_coding'414DEGain142.440N/ACTSL1N/A
1171177.15AC044839.16'rRNA_pseudogene'11DELoss-142.380N/AAC044839.16N/A
1181187.14C1QA'protein_coding'311DEGain141.450N/AC1QAN/A
1191197.13RARRES1'protein_coding'16DEGain140.140N/ARARRES1N/A
1201207.12PPP1R10'protein_coding'120AELoss-10.176EU AB E2_Aa100.00
1211217.12PNPLA8'protein_coding'213AELoss-17.382CE I4_AR20
1221227.10C5orf5'protein_coding'123AELoss-11.769EU CE I10_AR183.33
1231237.10CD2'protein_coding'27DEGain136.804EU CE CD250.00
1241247.09FSTL1'protein_coding'111DEGain135.810N/AFSTL1N/A
1251257.08LAGE3'protein_coding'25AEGain23.183EU AB E2_Db0.00
1261267.08ADAMDEC1'protein_coding'215DEGain135.130N/AADAMDEC1N/A
1271277.06HERC2'protein_coding'193AELoss-16.2853EU AB CE I2_AR656.00
1281287.05AFMID'protein_coding'516AEGain9.4819EU ES AB IR I8_AR380.00
1291297.05FYB'protein_coding'219DEGain132.240N/AFYBN/A
1301307.04DYRK1A'protein_coding'621AELoss-11.6511EU ES ER2a80.00
1311317.03TMEM77'protein_coding'211AEGain183.372EU E1b_E2a100.00
1321327.03SORL1'protein_coding'148AELoss-19.855EU CE I14_AR20.00
1331337.03C9orf86'protein_coding'625AEGain14.842AB E1_Ab0
1341347.02SPARCL1'protein_coding'111DEGain129.540N/ASPARCL1N/A
1351357.00CCL2'protein_coding'13DEGain128.170N/ACCL2N/A
1361366.99CUL3'protein_coding'420AELoss-17.1114EU ES AB CE I7_AR166.67
1371376.98MS4A6A'protein_coding'17DEGain126.210N/AMS4A6AN/A
1381386.96TK1'protein_coding'210AEGain4.453EU AB E5_Da0
1391396.95EEA1'protein_coding'129AELoss-7.305EU CE I2_AR150.00
1401406.94PLXND1'protein_coding'237AELoss-5.0016EU CE I9_AR221.43
1411416.93FAM118A'protein_coding'314AEGain81.038EU AB IR E5_Da0
1421426.92BUB3'protein_coding'414AEGain55.828EU AB E7_Ab60.00
1431436.92COBLL1'protein_coding'521AELoss-7.4312EU AB E3_Da90.00
1441446.91IL32'protein_coding'613DEGain120.273EU ES IL3250.00
1451456.90RHBDD1'protein_coding'311AELoss-15.094EU AB E1_Da0.00
1461466.90ZEB2'protein_coding'520AELoss-5.465EU AB ER13a0.00
1471476.89AKAP10'protein_coding'215AELoss-12.813EU CE I5_AR10
1481486.88DTWD2'protein_coding'16AELoss-19.591CE I1_AR10
1491496.87MON2'protein_coding'540AELoss-11.596EU CE I5_AR20.00
1501506.87MOBKL3'protein_coding'616AELoss-8.297EU ES AB E2a_E5a66.67
1511516.85AC010468.5'pseudogene'12AELoss-21.291EU ENST000003989810
1521526.85TALDO1'protein_coding'18AELoss-79.353EU ER3a100.00
1531536.85GPNMB'protein_coding'314DEGain114.970N/AGPNMBN/A
1541546.83IGL@'IG_V_gene'12DELoss-113.810N/AIGL@N/A
1551556.82AC022210.8'pseudogene'13AEGain10.003EU ES AB ER1a100.00
1561566.78DCN'protein_coding'610DEGain109.713EU ES DCN50.00
1571576.76PCBD2'protein_coding'25AELoss-48.275IR I3_AR110
1581586.76ARMC8'protein_coding'428AELoss-10.926EU ES E1a_E4a80.00
1591596.75USP9X'protein_coding'248AELoss-9.3546EU AB E30_Da83.72
1601606.73PIK3CG'protein_coding'111AELoss-14.301AB E8_Aa0
1611616.72SAPS1'protein_coding'124AELoss-70.981EU E17a_E18a0
1621626.72THY1'protein_coding'14DEGain105.440N/ATHY1N/A
1631636.71SENP7'protein_coding'729AELoss-7.4710EU CE I4_AR250.00
1641646.70PTK2B'protein_coding'438AEGain32.6920EU AB IR CE I28_AR240.00
1651656.70HUWE1'protein_coding'691AEGain56.50123EU ES AB E12a_E13a93.28
1661666.70CSF1R'protein_coding'224DEGain103.680N/ACSF1RN/A
1671676.69MAP4K4'protein_coding'535AELoss-12.9211EU ES E17a_E18a70.00
1681686.68UCHL3'protein_coding'210AEGain18.452AB CE E9_Da0
1691696.66ZC3HAV1'protein_coding'113AELoss-8.9212EU AB IR CE E9_Da83.33
1701706.66SSU_rRNA_5'rRNA'11DELoss-101.160N/ASSU_rRNA_5N/A
1711716.64FAM3C'protein_coding'110AELoss-13.134EU E6a_E7a0.00
1721726.64ZNF609'protein_coding'19AELoss-47.575EU CE I1_AR120.00
1731736.63LRCH3'protein_coding'119AELoss-9.209EU ES CE I8_AR271.43
1741746.62CDC42SE2'protein_coding'26AELoss-15.111CE I3_AR90
1751756.61RANBP2'protein_coding'231AELoss-8.4122EU AB IR CE I12_SR140.00
1761766.61TMEM176B'protein_coding'29DEGain97.633EU TMEM176B50.00
1771776.61GIMAP4'protein_coding'13DEGain97.520N/AGIMAP4N/A
1781786.61COL6A1'protein_coding'135DEGain97.490N/ACOL6A1N/A
1791796.60AC004833.1'pseudogene'13AELoss-65.861AB E2_Da0
1801806.60LACTB2'protein_coding'17AELoss-12.562EU CE I1_AR10
1811816.59NFAT5'protein_coding'316AELoss-10.9814EU CE I15_AR166.67
1821826.56ZNF85'protein_coding'26AELoss-9.684EU E3a_E4a33.33
1831836.56PLA2G7'protein_coding'112DEGain94.160N/APLA2G7N/A
1841846.55PJA2'protein_coding'212AELoss-10.007EU CE I1_AR250.00
1851856.55ZC3H6'protein_coding'216AELoss-15.109EU AB CE E1_Da66.67
1861866.54MNDA'protein_coding'17DEGain93.000N/AMNDAN/A
1871876.54AL122127.6'IG_J_gene'11DELoss-92.770N/AAL122127.6N/A
1881886.53ZNF410'protein_coding'314AELoss-19.462EU ES ENST000003245930.00
1891896.52AC026713.5'protein_coding'239AELoss-5.3616EU AB CE I9_AR38.33
1901906.52C1S'protein_coding'634DEGain91.5617EU ES AB C1S53.33
1911916.51MND1'protein_coding'18AEGain8.782ES CE I4_AR10
1921926.50CD40'protein_coding'414AELoss-16.7712EU ES AB ENST0000037227650.00
1931936.50SCOTIN'protein_coding'211AEGain9.874EU E3a_E4a100.00
1941946.49IKZF1'protein_coding'68AELoss-11.903EU CE I3_AR140
1951956.48MCCC1'protein_coding'221AEGain11.843EU ES I14_SR6100.00
1961966.47CD4'protein_coding'110DEGain88.923EU CD40.00
1971976.47CNN3'protein_coding'29DEGain36.242EU CNN3100.00
1981986.47HTRA2'protein_coding'28AEGain12.522AB E3_Da0
1991996.47LRRFIP2'protein_coding'331AEGain25.084EU ES E17a_E18a100.00
2002006.45RPS27'protein_coding'37AELoss-63.182EU E3c_E4a0.00
2012016.44FOXN3'protein_coding'27AELoss-18.981CE I2_AR200
2022026.44SYTL3'protein_coding'321AELoss-7.5112EU AB IR I16_AR125.00
2032036.44C11orf75'protein_coding'13AEGain17.691CE I1_AR10
2042046.44CCDC138'protein_coding'217AELoss-5.884EU AB E2_Da100.00
2052056.43MAG'protein_coding'314AEGain42.114EU E10a_E11a66.67
2062066.43PARP14'protein_coding'422AELoss-4.0818EU IR CE I6_AR158.33
2072076.43HIST2H2BE'protein_coding'23AEGain9.336EU IR I1_SR3100.00
2082086.40GPR160'protein_coding'25AELoss-46.099EU CE I2_AR5100.00
2092096.40NPL'protein_coding'724AELoss-2.034EU ES AB E7_Da0.00
2102106.39SLC15A2'protein_coding'122AELoss-6.125EU CE I5_AR133.33
2112116.39TRBV19'IG_C_gene'25DEGain83.750N/ATRBV19N/A
2122126.38ANKRD44'protein_coding'533AELoss-7.588EU CE I1_AR1416.67
2132136.38ZFX'protein_coding'516AELoss-8.038EU ES AB E4_Da100.00
2142146.37TTLL3'protein_coding'830AEGain10.0726EU ES AB IR E14_Da78.95
2152156.37PSMA8'protein_coding'29AELoss-8.891CE I4_AR10
2162166.37LSM7'protein_coding'14AEGain3.343EU I2_SR2100.00
2172176.36CTLA4'protein_coding'36DEGain82.410N/ACTLA4N/A
2182186.36RASSF4'protein_coding'515DEGain82.336EU ES AB RASSF425.00
2192196.36GZMA'protein_coding'15DEGain82.120N/AGZMAN/A
2202206.35ZNF588'protein_coding'310AELoss-3.1012EU AB IR I260.00
2212216.35COL6A2'protein_coding'533DEGain81.290N/ACOL6A2N/A
2222226.34ALKBH2'protein_coding'14AEGain10.682ES AB E1_Da0
2232236.33CCNL1'protein_coding'212AEGain15.135AB IR CE E6_Da0
2242246.32C18orf1'protein_coding'59AELoss-7.8513EU ES AB CE E5_Aa80.00
2252256.32CD3D'protein_coding'25DEGain79.653EU ES CD3D0.00
2262266.31RPL3'protein_coding'417AELoss-785.0112EU AB IR ER9b50.00
2272276.31PCNT'protein_coding'249AELoss-5.8716EU AB IR E19_Aa75.00
2282286.30AIF1'protein_coding'59AEGain130.9411EU AB ER3a100.00
2292296.30R3HDM2'protein_coding'531AEGain10.0734EU ES AB IR I888.46
2302306.29CCDC93'protein_coding'227AELoss-9.873AB E7_Aa0
2312316.29MAPK8IP3'protein_coding'340AELoss-11.319EU AB CE I1_AR233.33
2322326.28MTMR6'protein_coding'216AELoss-12.252CE I1_SR10
2332336.27FABP4'protein_coding'14DEGain77.340N/AFABP4N/A
2342346.26RBM6'protein_coding'121AELoss-41.547EU AB CE I2_SR10.00
2352356.26CD14'protein_coding'24DEGain76.661EU CD140
2362366.25FOXP3'protein_coding'315DEGain76.240N/AFOXP3N/A
2372376.25OR2I1P'unprocessed_pseudogene'11DEGain76.050N/AOR2I1PN/A
2382386.25ZNF738'protein_coding'27AELoss-10.603EU E4a_E5b100.00
2392396.25ZCCHC6'protein_coding'735AELoss-15.1321EU AB IR CE I966.67
2402406.23GIMAP7'protein_coding'12DEGain74.970N/AGIMAP7N/A
2412416.22AC005726.1'pseudogene'12AELoss-15.582AB E1_Da0
2422426.22CASK'protein_coding'835AELoss-7.8011EU AB CE I5_AR50.00
2432436.21SLCO2B1'protein_coding'214DEGain74.240N/ASLCO2B1N/A
2442446.21ZNF44'protein_coding'419AELoss-14.694EU IR CE I3_AR40
2452456.21COL4A1'protein_coding'467DEGain74.080N/ACOL4A1N/A
2462466.21FUSIP1'protein_coding'615AELoss-11.013AB E1_Ad0
2472476.21AQP1'protein_coding'410DEGain73.980N/AAQP1N/A
2482486.20UGCG'protein_coding'19AELoss-10.801I5_SR10
2492496.20TXLNB'protein_coding'212AELoss-16.274CE I2_AR40
2502506.20PLEKHK1'protein_coding'417AELoss-7.066EU ES E1a_E2a80.00
2512516.20NT5C2'protein_coding'521AELoss-23.7211EU ES AB I1_SR887.50


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.44RPL7'protein_coding'517AELoss-433.6422EU AB IR ER7a80.00
2215.26HLA-DRB1'protein_coding'16AELoss-1411.672EU E2a_E3a100.00
3313.84BRE'protein_coding'721AELoss-1220.119EU AB CE I1_AR1100.00
4412.34IGHG4'IG_C_gene'29AELoss-125.015EU AB IR I4_AR10.00
5511.81RPL37'protein_coding'28AELoss-1287.217EU ES AB ER2b80.00
6611.32SCP2'protein_coding'521AELoss-42.108EU CE I12_AR1100.00
7711.06HLA-DRB5'protein_coding'27AEGain94.442EU E3a_E4a0.00
8810.94HLA-DQA1'protein_coding'411AEGain622.239EU AB E4_Ac20.00
9910.91RPL28'protein_coding'15AELoss-3152.396EU AB ER3a50.00
101010.73RPL23A'protein_coding'39AELoss-412.844EU ER4a100.00
111110.72HLA-DQB1'protein_coding'817AELoss-100.354EU ES AB E6a_E9a0.00
121210.56FNIP1'protein_coding'320AELoss-59.9812EU ES AB CE I15_AR133.33
131310.44HLA-DPB1'protein_coding'818AELoss-61.676EU ES AB E8b_E9a33.33
141410.21HLA-A'protein_coding'723AEGain600.156EU AB E8b_E9a33.33
15159.90HIF1A'protein_coding'418AELoss-54.751I12_SR20
16169.73H3F3A'protein_coding'411AELoss-31.977EU AB E2a_E3b33.33
17189.56PCNP'protein_coding'25AELoss-45.123EU CE I1_SR10
18199.53SMC4'protein_coding'429AELoss-80.4213EU AB CE I5_AR470.00
19209.51PLA2G2D'protein_coding'14DEGain195.172EU PLA2G2D100.00
20229.33RAB3GAP2'protein_coding'239AELoss-34.0814EU AB IR I27_AR170.00
21239.10APOE'protein_coding'14DEGain547.262EU APOE0.00
22249.02LYZ'protein_coding'14DEGain148.724EU LYZ33.33
23258.97HLA-DQB2'protein_coding'49AEGain6.633EU E1a_E2a0.00
24268.94TAOK3'protein_coding'225AELoss-69.9719EU CE I3_AR581.82
25278.90SNX6'protein_coding'420AELoss-24.2712EU CE I11_AR290.00
26288.90RPL9'protein_coding'18AEGain4.589EU AB IR E7_Da50.00
27298.89PRPF18'protein_coding'419AELoss-188.748EU ES AB E3_Da40.00
28308.87KIAA1033'protein_coding'234AELoss-7.2516EU AB ENST0000031131757.14
29318.79AHSA2'protein_coding'723AELoss-11.3521EU ES AB IR CE E11_Db20.00
30328.78ANKRD17'protein_coding'344AELoss-21.005EU CE I1_AR6100.00
31348.72AC004448.3'pseudogene'12AELoss-7.335EU AB E2_Aa100.00
32358.70IL6ST'protein_coding'1029AELoss-3.615EU AB CE I18_AR40.00
33368.65AHR'protein_coding'213AELoss-35.824EU AB IR I11_SR10
34378.65RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.071EU E3a_E4a0
35388.58IFITM2'protein_coding'27AELoss-25.032EU AB E1c_E2a0
36418.49SPARC'protein_coding'110DEGain359.012EU SPARC0.00
37428.46FAM172A'protein_coding'213AELoss-26.9411EU CE I10_AR2133.33
38438.46EIF4E'protein_coding'29AELoss-31.813EU E5a_E6a50.00
39448.45SC-9C5.12'protein_coding'35AEGain5.7717EU ES AB IR I1_SR150.00
40458.44FAM126B'protein_coding'112AELoss-25.023EU CE I1_SR30
41478.35FOSB'protein_coding'14DELoss-326.282EU AB FOSB0
42488.29TBC1D4'protein_coding'221AELoss-17.8429EU AB CE ER9a91.30
43508.25C7orf28A'protein_coding'115AEGain35.167EU AB E8a_E9a20.00
44518.22AC091982.3'pseudogene'12AELoss-34.541AB E2_Aa0
45538.12FER'protein_coding'120AELoss-32.266EU CE I2_AR275.00
46558.03ITGB7'protein_coding'216AEGain19.237EU AB IR I4_SR1100.00
47577.99EXOSC8'protein_coding'315AEGain27.616EU AB IR E4_Da100.00
48587.98MGST3'protein_coding'717AELoss-11.212EU ER10a0.00
49597.98MMP9'protein_coding'113DEGain251.913EU MMP90.00
50617.95DENND4A'protein_coding'132AELoss-27.4815EU IR I19_SR266.67
51627.91ESNA1'protein_coding'522AELoss-28.395EU CE I12_AR10.00
52637.90CCDC144B'protein_coding'221AELoss-20.764AB IR CE I70
53647.89HIST1H2AC'protein_coding'35AELoss-13.124EU AB E3_Aa0.00
54657.82APOC1'protein_coding'15DEGain226.424EU APOC133.33
55677.79C1orf71'protein_coding'315AELoss-18.581CE I2_AR10
56687.79VPS53'protein_coding'326AELoss-35.262CE I5_AR10
57717.77IL18'protein_coding'16DEGain74.296EU IL1880.00
58737.75TRAPPC10'protein_coding'224AELoss-20.684EU CE I3_SR10
59747.74ZMAT1'protein_coding'212AELoss-2.105EU CE ER2a0.00
60757.74TM9SF3'protein_coding'115AELoss-12.358EU I4_SR1100.00
61777.74TMEM119'protein_coding'25AELoss-2.512EU AB E2_Ab0
62797.72GOLGA3'protein_coding'124AELoss-78.9310EU AB IR CE I1_AR240.00
63807.72DDX17'protein_coding'519AEGain88.668EU AB IR ER11b100.00
64827.67ERBB2IP'protein_coding'628AELoss-11.3232EU ES CE E22a_E23a76.67
65837.67PPP3CC'protein_coding'314AEGain23.224EU ES CE I12_AR90.00
66847.65A2LD1'protein_coding'25AELoss-20.222AB CE I2_AR100
67857.63CD3E'protein_coding'212DEGain68.764EU ES CD3E66.67
68867.62PPP2R5C'protein_coding'418AELoss-33.917EU ES CE I4_AR13100.00
69877.61C3'protein_coding'141DEGain194.9313EU C341.67
70887.60NAPEPLD'protein_coding'16AELoss-11.784EU I1_SR40.00
71907.59CWC15'protein_coding'18AELoss-29.903EU E6a_E7a0.00
72917.58MGEA5'protein_coding'318AELoss-19.817EU IR CE I9_AR10
73927.58IGHE'IG_C_gene'211DEGain190.803EU AB CE IGHE0
74947.53FOLR2'protein_coding'212AEGain94.6016EU AB ER3d75.00
75967.44COL1A1'protein_coding'151DEGain173.5216EU COL1A16.67
76987.39IKZF2'protein_coding'616AELoss-7.105EU AB E1_Da0.00
771017.36IGHV4-31'IG_C_gene'27AEGain3.513EU E4a_E5a0.00
781027.36TMEM66'protein_coding'16AELoss-22.441CE I1_AR20
791037.35DMTF1'protein_coding'323AELoss-10.9119EU ES AB IR CE I5_AR125.00
801047.35TCTN1'protein_coding'827AELoss-2.3923EU ES AB CE E3_Aa58.82
811067.33SNX9'protein_coding'220AELoss-16.672EU CE I5_AR90
821077.32AAAS'protein_coding'217AEGain13.106EU AB IR I1100.00
831087.24RERE'protein_coding'427AEGain15.9224EU ES AB CE E14_Aa75.00
841107.21CCL21'protein_coding'26DEGain147.772EU CCL210.00
851117.19ADAM10'protein_coding'426AELoss-12.4611EU ES AB CE I4_AR128.57
861127.18WDR68'protein_coding'18AELoss-27.594EU E5a_E6a66.67
871137.17AFF4'protein_coding'427AELoss-13.764EU ES AB CE I1_AR1100.00
881147.17ANKRD11'protein_coding'622AELoss-17.335EU AB IR CE I2_SR20
891157.16RB1'protein_coding'127AELoss-10.2013EU CE I1_AR660.00
901207.12PPP1R10'protein_coding'120AELoss-10.176EU AB E2_Aa100.00
911217.12PNPLA8'protein_coding'213AELoss-17.382CE I4_AR20
921227.10C5orf5'protein_coding'123AELoss-11.769EU CE I10_AR183.33
931237.10CD2'protein_coding'27DEGain136.804EU CE CD250.00
941257.08LAGE3'protein_coding'25AEGain23.183EU AB E2_Db0.00
951277.06HERC2'protein_coding'193AELoss-16.2853EU AB CE I2_AR656.00
961287.05AFMID'protein_coding'516AEGain9.4819EU ES AB IR I8_AR380.00
971307.04DYRK1A'protein_coding'621AELoss-11.6511EU ES ER2a80.00
981317.03TMEM77'protein_coding'211AEGain183.372EU E1b_E2a100.00
991327.03SORL1'protein_coding'148AELoss-19.855EU CE I14_AR20.00
1001337.03C9orf86'protein_coding'625AEGain14.842AB E1_Ab0
1011366.99CUL3'protein_coding'420AELoss-17.1114EU ES AB CE I7_AR166.67
1021386.96TK1'protein_coding'210AEGain4.453EU AB E5_Da0
1031396.95EEA1'protein_coding'129AELoss-7.305EU CE I2_AR150.00
1041406.94PLXND1'protein_coding'237AELoss-5.0016EU CE I9_AR221.43
1051416.93FAM118A'protein_coding'314AEGain81.038EU AB IR E5_Da0
1061426.92BUB3'protein_coding'414AEGain55.828EU AB E7_Ab60.00
1071436.92COBLL1'protein_coding'521AELoss-7.4312EU AB E3_Da90.00
1081446.91IL32'protein_coding'613DEGain120.273EU ES IL3250.00
1091456.90RHBDD1'protein_coding'311AELoss-15.094EU AB E1_Da0.00
1101466.90ZEB2'protein_coding'520AELoss-5.465EU AB ER13a0.00
1111476.89AKAP10'protein_coding'215AELoss-12.813EU CE I5_AR10
1121486.88DTWD2'protein_coding'16AELoss-19.591CE I1_AR10
1131496.87MON2'protein_coding'540AELoss-11.596EU CE I5_AR20.00
1141506.87MOBKL3'protein_coding'616AELoss-8.297EU ES AB E2a_E5a66.67
1151516.85AC010468.5'pseudogene'12AELoss-21.291EU ENST000003989810
1161526.85TALDO1'protein_coding'18AELoss-79.353EU ER3a100.00
1171556.82AC022210.8'pseudogene'13AEGain10.003EU ES AB ER1a100.00
1181566.78DCN'protein_coding'610DEGain109.713EU ES DCN50.00
1191576.76PCBD2'protein_coding'25AELoss-48.275IR I3_AR110
1201586.76ARMC8'protein_coding'428AELoss-10.926EU ES E1a_E4a80.00
1211596.75USP9X'protein_coding'248AELoss-9.3546EU AB E30_Da83.72
1221606.73PIK3CG'protein_coding'111AELoss-14.301AB E8_Aa0
1231616.72SAPS1'protein_coding'124AELoss-70.981EU E17a_E18a0
1241636.71SENP7'protein_coding'729AELoss-7.4710EU CE I4_AR250.00
1251646.70PTK2B'protein_coding'438AEGain32.6920EU AB IR CE I28_AR240.00
1261656.70HUWE1'protein_coding'691AEGain56.50123EU ES AB E12a_E13a93.28
1271676.69MAP4K4'protein_coding'535AELoss-12.9211EU ES E17a_E18a70.00
1281686.68UCHL3'protein_coding'210AEGain18.452AB CE E9_Da0
1291696.66ZC3HAV1'protein_coding'113AELoss-8.9212EU AB IR CE E9_Da83.33
1301716.64FAM3C'protein_coding'110AELoss-13.134EU E6a_E7a0.00
1311726.64ZNF609'protein_coding'19AELoss-47.575EU CE I1_AR120.00
1321736.63LRCH3'protein_coding'119AELoss-9.209EU ES CE I8_AR271.43
1331746.62CDC42SE2'protein_coding'26AELoss-15.111CE I3_AR90
1341756.61RANBP2'protein_coding'231AELoss-8.4122EU AB IR CE I12_SR140.00
1351766.61TMEM176B'protein_coding'29DEGain97.633EU TMEM176B50.00
1361796.60AC004833.1'pseudogene'13AELoss-65.861AB E2_Da0
1371806.60LACTB2'protein_coding'17AELoss-12.562EU CE I1_AR10
1381816.59NFAT5'protein_coding'316AELoss-10.9814EU CE I15_AR166.67
1391826.56ZNF85'protein_coding'26AELoss-9.684EU E3a_E4a33.33
1401846.55PJA2'protein_coding'212AELoss-10.007EU CE I1_AR250.00
1411856.55ZC3H6'protein_coding'216AELoss-15.109EU AB CE E1_Da66.67
1421886.53ZNF410'protein_coding'314AELoss-19.462EU ES ENST000003245930.00
1431896.52AC026713.5'protein_coding'239AELoss-5.3616EU AB CE I9_AR38.33
1441906.52C1S'protein_coding'634DEGain91.5617EU ES AB C1S53.33
1451916.51MND1'protein_coding'18AEGain8.782ES CE I4_AR10
1461926.50CD40'protein_coding'414AELoss-16.7712EU ES AB ENST0000037227650.00
1471936.50SCOTIN'protein_coding'211AEGain9.874EU E3a_E4a100.00
1481946.49IKZF1'protein_coding'68AELoss-11.903EU CE I3_AR140
1491956.48MCCC1'protein_coding'221AEGain11.843EU ES I14_SR6100.00
1501966.47CD4'protein_coding'110DEGain88.923EU CD40.00
1511976.47CNN3'protein_coding'29DEGain36.242EU CNN3100.00
1521986.47HTRA2'protein_coding'28AEGain12.522AB E3_Da0
1531996.47LRRFIP2'protein_coding'331AEGain25.084EU ES E17a_E18a100.00
1542006.45RPS27'protein_coding'37AELoss-63.182EU E3c_E4a0.00
1552016.44FOXN3'protein_coding'27AELoss-18.981CE I2_AR200
1562026.44SYTL3'protein_coding'321AELoss-7.5112EU AB IR I16_AR125.00
1572036.44C11orf75'protein_coding'13AEGain17.691CE I1_AR10
1582046.44CCDC138'protein_coding'217AELoss-5.884EU AB E2_Da100.00
1592056.43MAG'protein_coding'314AEGain42.114EU E10a_E11a66.67
1602066.43PARP14'protein_coding'422AELoss-4.0818EU IR CE I6_AR158.33
1612076.43HIST2H2BE'protein_coding'23AEGain9.336EU IR I1_SR3100.00
1622086.40GPR160'protein_coding'25AELoss-46.099EU CE I2_AR5100.00
1632096.40NPL'protein_coding'724AELoss-2.034EU ES AB E7_Da0.00
1642106.39SLC15A2'protein_coding'122AELoss-6.125EU CE I5_AR133.33
1652126.38ANKRD44'protein_coding'533AELoss-7.588EU CE I1_AR1416.67
1662136.38ZFX'protein_coding'516AELoss-8.038EU ES AB E4_Da100.00
1672146.37TTLL3'protein_coding'830AEGain10.0726EU ES AB IR E14_Da78.95
1682156.37PSMA8'protein_coding'29AELoss-8.891CE I4_AR10
1692166.37LSM7'protein_coding'14AEGain3.343EU I2_SR2100.00
1702186.36RASSF4'protein_coding'515DEGain82.336EU ES AB RASSF425.00
1712206.35ZNF588'protein_coding'310AELoss-3.1012EU AB IR I260.00
1722226.34ALKBH2'protein_coding'14AEGain10.682ES AB E1_Da0
1732236.33CCNL1'protein_coding'212AEGain15.135AB IR CE E6_Da0
1742246.32C18orf1'protein_coding'59AELoss-7.8513EU ES AB CE E5_Aa80.00
1752256.32CD3D'protein_coding'25DEGain79.653EU ES CD3D0.00
1762266.31RPL3'protein_coding'417AELoss-785.0112EU AB IR ER9b50.00
1772276.31PCNT'protein_coding'249AELoss-5.8716EU AB IR E19_Aa75.00
1782286.30AIF1'protein_coding'59AEGain130.9411EU AB ER3a100.00
1792296.30R3HDM2'protein_coding'531AEGain10.0734EU ES AB IR I888.46
1802306.29CCDC93'protein_coding'227AELoss-9.873AB E7_Aa0
1812316.29MAPK8IP3'protein_coding'340AELoss-11.319EU AB CE I1_AR233.33
1822326.28MTMR6'protein_coding'216AELoss-12.252CE I1_SR10
1832346.26RBM6'protein_coding'121AELoss-41.547EU AB CE I2_SR10.00
1842356.26CD14'protein_coding'24DEGain76.661EU CD140
1852386.25ZNF738'protein_coding'27AELoss-10.603EU E4a_E5b100.00
1862396.25ZCCHC6'protein_coding'735AELoss-15.1321EU AB IR CE I966.67
1872416.22AC005726.1'pseudogene'12AELoss-15.582AB E1_Da0
1882426.22CASK'protein_coding'835AELoss-7.8011EU AB CE I5_AR50.00
1892446.21ZNF44'protein_coding'419AELoss-14.694EU IR CE I3_AR40
1902466.21FUSIP1'protein_coding'615AELoss-11.013AB E1_Ad0
1912486.20UGCG'protein_coding'19AELoss-10.801I5_SR10
1922496.20TXLNB'protein_coding'212AELoss-16.274CE I2_AR40
1932506.20PLEKHK1'protein_coding'417AELoss-7.066EU ES E1a_E2a80.00
1942516.20NT5C2'protein_coding'521AELoss-23.7211EU ES AB I1_SR887.50
1952526.19NR4A1'protein_coding'615DELoss-73.247EU AB NR4A10.00
1962546.19STIM2'protein_coding'215AELoss-19.007EU CE I1_SR566.67
1972556.19ITSN2'protein_coding'646AELoss-14.4616EU ES CE I4_AR171.43
1982566.18AC140077.17'protein_coding'110DEGain72.321EU AC140077.170
1992586.17PDCD7'protein_coding'29AEGain12.085AB IR I4_AR20
2002596.15GMDS'protein_coding'213AELoss-37.878EU CE I9_SR750.00
2012606.14EEF1A1'protein_coding'619AELoss-12.966EU AB E7a_E8a0.00
2022626.14CSAD'protein_coding'527AELoss-6.665EU AB CE E4_Da100.00
2032636.13PTGDS'protein_coding'310DEGain69.991EU PTGDS0
2042646.13WDR43'protein_coding'221AELoss-12.552CE I1_SR10
2052666.12ITGB2'protein_coding'827AEGain82.8913EU ES AB CE E5a_E6a71.43
2062706.12DDX50'protein_coding'115AELoss-10.559EU AB CE I1_AR183.33
2072716.11TMEM176A'protein_coding'17DEGain69.231EU TMEM176A0
2082726.11CPEB2'protein_coding'514AELoss-5.546EU CE I3_AR350.00
2092736.10ESR2'protein_coding'614AELoss-11.304EU CE I9_SR40
2102746.10VPS11'protein_coding'117AELoss-7.974EU E2a_E3a100.00
2112756.09CCDC152'protein_coding'19DEGain68.075EU CCDC15250.00
2122776.08GCDH'protein_coding'112AELoss-65.543IR I6_AR20
2132806.06CHCHD10'protein_coding'27AEGain7.411EU ER1a0
2142816.06ZNF682'protein_coding'37AELoss-9.942EU E3a_E4a0.00
2152826.06TIMP1'protein_coding'411DEGain66.764EU ES TIMP133.33
2162836.06AC013414.7'protein_coding'126AELoss-5.622EU CE I1_AR20
2172856.06TMBIM4'protein_coding'312AELoss-9.434EU AB E8_Da50.00
2182866.05C10orf118'protein_coding'321AELoss-6.935EU CE I2_AR20.00
2192876.05UHRF1'protein_coding'219AEGain6.573EU AB E2_Ab0.00
2202886.04ASAH1'protein_coding'319DEGain28.5312EU ES AB ASAH180.00
2212906.04C1orf103'protein_coding'24AELoss-10.881AB E1_Da0
2222926.03ZNF680'protein_coding'25AELoss-4.572EU CE I1_AR90
2232936.03TTC7A'protein_coding'528AELoss-12.543EU ER5a50.00
2242956.01ZDHHC14'protein_coding'210AELoss-6.241I1_SR180
2252985.99SERPINF1'protein_coding'18DEGain63.431EU SERPINF10
2262995.99BCL2'protein_coding'24DEGain63.359EU AB CE BCL266.67
2273005.97AB019440.1'IG_V_gene'12DELoss-27.462EU AB019440.1100.00
2283025.97PHIP'protein_coding'242AELoss-11.3011EU CE I4_SR112.50
2293035.97MAP3K5'protein_coding'336AELoss-4.4610EU ES CE I1_AR425.00
2303055.96PI4KA'protein_coding'258AELoss-11.2819EU AB ER50b52.94
2313065.96IFT122'protein_coding'432AEGain12.9511EU AB E19_Aa37.50
2323075.95ELF1'protein_coding'312AEGain8.582EU ER1b100.00
2333085.95PPARA'protein_coding'517AELoss-3.304EU AB CE I8_AR20.00
2343115.94TGFBR2'protein_coding'311AELoss-8.981CE I1_AR20
2353135.93STAG3'protein_coding'440AEGain35.4712EU ES AB E4_Da44.44
2363145.93MRPS5'protein_coding'213AEGain8.952ES CE I7_AR20
2373155.92AC135457.2'protein_coding'27AEGain2.942EU AB E1_Da0
2383165.92TYROBP'protein_coding'15DEGain60.391EU TYROBP0
2393175.92CXCL10'protein_coding'25DEGain60.363EU CXCL1050.00
2403185.91DNAJC5B'protein_coding'16DEGain60.331EU DNAJC5B0
2413205.91RAPGEF1'protein_coding'837AELoss-14.8915EU ES AB CE I14_SR160.00
2423215.91PALLD'protein_coding'426AELoss-4.0614EU ES AB E3a_E4a66.67
2433225.91MAML3'protein_coding'310AELoss-10.054EU AB CE I5_AR16100.00
2443235.90FUS'protein_coding'319AEGain8.314EU AB E8_Da0.00
2453265.89GBA3'protein_coding'15AELoss-10.5016IR I1_SR170
2463275.89NFATC2'protein_coding'315AELoss-10.732CE I4_AR10
2473285.89IGFBP3'protein_coding'310DEGain59.151AB IGFBP30
2483295.89TBC1D9B'protein_coding'222AELoss-13.341CE I7_AR10
2493305.88TRIB2'protein_coding'37AELoss-3.512EU AB ER3a0
2503315.88DOCK6'protein_coding'148AELoss-7.413EU CE I39_AR30
2513335.87FILIP1L'protein_coding'410AELoss-3.031EU ER5a0


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1711.06HLA-DRB5'protein_coding'27AEGain94.442EU E3a_E4a0.00
2810.94HLA-DQA1'protein_coding'411AEGain622.239EU AB E4_Ac20.00
31410.21HLA-A'protein_coding'723AEGain600.156EU AB E8b_E9a33.33
4179.60SEPP1'protein_coding'14DEGain774.040N/ASEPP1N/A
5209.51PLA2G2D'protein_coding'14DEGain195.172EU PLA2G2D100.00
6219.44CXCL9'protein_coding'14DEGain695.890N/ACXCL9N/A
7239.10APOE'protein_coding'14DEGain547.262EU APOE0.00
8249.02LYZ'protein_coding'14DEGain148.724EU LYZ33.33
9258.97HLA-DQB2'protein_coding'49AEGain6.633EU E1a_E2a0.00
10288.90RPL9'protein_coding'18AEGain4.589EU AB IR E7_Da50.00
11338.76LUM'protein_coding'13DEGain434.160N/ALUMN/A
12408.52CCL19'protein_coding'26DEGain367.280N/ACCL19N/A
13418.49SPARC'protein_coding'110DEGain359.012EU SPARC0.00
14448.45SC-9C5.12'protein_coding'35AEGain5.7717EU ES AB IR I1_SR150.00
15498.28ENPP2'protein_coding'226DEGain310.860N/AENPP2N/A
16508.25C7orf28A'protein_coding'115AEGain35.167EU AB E8a_E9a20.00
17528.21SLC40A1'protein_coding'18DEGain295.800N/ASLC40A1N/A
18558.03ITGB7'protein_coding'216AEGain19.237EU AB IR I4_SR1100.00
19568.02BGN'protein_coding'211DEGain259.430N/ABGNN/A
20577.99EXOSC8'protein_coding'315AEGain27.616EU AB IR E4_Da100.00
21597.98MMP9'protein_coding'113DEGain251.913EU MMP90.00
22607.97FN1'protein_coding'1050DEGain250.980N/AFN1N/A
23657.82APOC1'protein_coding'15DEGain226.424EU APOC133.33
24667.79COL3A1'protein_coding'254DEGain221.710N/ACOL3A1N/A
25717.77IL18'protein_coding'16DEGain74.296EU IL1880.00
26727.77COL1A2'protein_coding'254DEGain217.960N/ACOL1A2N/A
27767.74A2M'protein_coding'240DEGain213.280N/AA2MN/A
28787.72TIMP3'protein_coding'28DEGain211.510N/ATIMP3N/A
29807.72DDX17'protein_coding'519AEGain88.668EU AB IR ER11b100.00
30817.71IGFBP7'protein_coding'15DEGain209.920N/AIGFBP7N/A
31837.67PPP3CC'protein_coding'314AEGain23.224EU ES CE I12_AR90.00
32857.63CD3E'protein_coding'212DEGain68.764EU ES CD3E66.67
33877.61C3'protein_coding'141DEGain194.9313EU C341.67
34897.60C1QB'protein_coding'13DEGain193.890N/AC1QBN/A
35927.58IGHE'IG_C_gene'211DEGain190.803EU AB CE IGHE0
36937.53U66059.1'IG_V_gene'12DEGain185.180N/AU66059.1N/A
37947.53FOLR2'protein_coding'212AEGain94.6016EU AB ER3d75.00
38957.48GZMK'protein_coding'15DEGain178.320N/AGZMKN/A
39967.44COL1A1'protein_coding'151DEGain173.5216EU COL1A16.67
40977.43CCL18'protein_coding'13DEGain172.250N/ACCL18N/A
41997.39SERPING1'protein_coding'617DEGain167.870N/ASERPING1N/A
421007.38C1QC'protein_coding'37DEGain166.240N/AC1QCN/A
431017.36IGHV4-31'IG_C_gene'27AEGain3.513EU E4a_E5a0.00
441077.32AAAS'protein_coding'217AEGain13.106EU AB IR I1100.00
451087.24RERE'protein_coding'427AEGain15.9224EU ES AB CE E14_Aa75.00
461097.23POSTN'protein_coding'524DEGain150.570N/APOSTNN/A
471107.21CCL21'protein_coding'26DEGain147.772EU CCL210.00
481167.15CTSL1'protein_coding'414DEGain142.440N/ACTSL1N/A
491187.14C1QA'protein_coding'311DEGain141.450N/AC1QAN/A
501197.13RARRES1'protein_coding'16DEGain140.140N/ARARRES1N/A
511237.10CD2'protein_coding'27DEGain136.804EU CE CD250.00
521247.09FSTL1'protein_coding'111DEGain135.810N/AFSTL1N/A
531257.08LAGE3'protein_coding'25AEGain23.183EU AB E2_Db0.00
541267.08ADAMDEC1'protein_coding'215DEGain135.130N/AADAMDEC1N/A
551287.05AFMID'protein_coding'516AEGain9.4819EU ES AB IR I8_AR380.00
561297.05FYB'protein_coding'219DEGain132.240N/AFYBN/A
571317.03TMEM77'protein_coding'211AEGain183.372EU E1b_E2a100.00
581337.03C9orf86'protein_coding'625AEGain14.842AB E1_Ab0
591347.02SPARCL1'protein_coding'111DEGain129.540N/ASPARCL1N/A
601357.00CCL2'protein_coding'13DEGain128.170N/ACCL2N/A
611376.98MS4A6A'protein_coding'17DEGain126.210N/AMS4A6AN/A
621386.96TK1'protein_coding'210AEGain4.453EU AB E5_Da0
631416.93FAM118A'protein_coding'314AEGain81.038EU AB IR E5_Da0
641426.92BUB3'protein_coding'414AEGain55.828EU AB E7_Ab60.00
651446.91IL32'protein_coding'613DEGain120.273EU ES IL3250.00
661536.85GPNMB'protein_coding'314DEGain114.970N/AGPNMBN/A
671556.82AC022210.8'pseudogene'13AEGain10.003EU ES AB ER1a100.00
681566.78DCN'protein_coding'610DEGain109.713EU ES DCN50.00
691626.72THY1'protein_coding'14DEGain105.440N/ATHY1N/A
701646.70PTK2B'protein_coding'438AEGain32.6920EU AB IR CE I28_AR240.00
711656.70HUWE1'protein_coding'691AEGain56.50123EU ES AB E12a_E13a93.28
721666.70CSF1R'protein_coding'224DEGain103.680N/ACSF1RN/A
731686.68UCHL3'protein_coding'210AEGain18.452AB CE E9_Da0
741766.61TMEM176B'protein_coding'29DEGain97.633EU TMEM176B50.00
751776.61GIMAP4'protein_coding'13DEGain97.520N/AGIMAP4N/A
761786.61COL6A1'protein_coding'135DEGain97.490N/ACOL6A1N/A
771836.56PLA2G7'protein_coding'112DEGain94.160N/APLA2G7N/A
781866.54MNDA'protein_coding'17DEGain93.000N/AMNDAN/A
791906.52C1S'protein_coding'634DEGain91.5617EU ES AB C1S53.33
801916.51MND1'protein_coding'18AEGain8.782ES CE I4_AR10
811936.50SCOTIN'protein_coding'211AEGain9.874EU E3a_E4a100.00
821956.48MCCC1'protein_coding'221AEGain11.843EU ES I14_SR6100.00
831966.47CD4'protein_coding'110DEGain88.923EU CD40.00
841976.47CNN3'protein_coding'29DEGain36.242EU CNN3100.00
851986.47HTRA2'protein_coding'28AEGain12.522AB E3_Da0
861996.47LRRFIP2'protein_coding'331AEGain25.084EU ES E17a_E18a100.00
872036.44C11orf75'protein_coding'13AEGain17.691CE I1_AR10
882056.43MAG'protein_coding'314AEGain42.114EU E10a_E11a66.67
892076.43HIST2H2BE'protein_coding'23AEGain9.336EU IR I1_SR3100.00
902116.39TRBV19'IG_C_gene'25DEGain83.750N/ATRBV19N/A
912146.37TTLL3'protein_coding'830AEGain10.0726EU ES AB IR E14_Da78.95
922166.37LSM7'protein_coding'14AEGain3.343EU I2_SR2100.00
932176.36CTLA4'protein_coding'36DEGain82.410N/ACTLA4N/A
942186.36RASSF4'protein_coding'515DEGain82.336EU ES AB RASSF425.00
952196.36GZMA'protein_coding'15DEGain82.120N/AGZMAN/A
962216.35COL6A2'protein_coding'533DEGain81.290N/ACOL6A2N/A
972226.34ALKBH2'protein_coding'14AEGain10.682ES AB E1_Da0
982236.33CCNL1'protein_coding'212AEGain15.135AB IR CE E6_Da0
992256.32CD3D'protein_coding'25DEGain79.653EU ES CD3D0.00
1002286.30AIF1'protein_coding'59AEGain130.9411EU AB ER3a100.00
1012296.30R3HDM2'protein_coding'531AEGain10.0734EU ES AB IR I888.46
1022336.27FABP4'protein_coding'14DEGain77.340N/AFABP4N/A
1032356.26CD14'protein_coding'24DEGain76.661EU CD140
1042366.25FOXP3'protein_coding'315DEGain76.240N/AFOXP3N/A
1052376.25OR2I1P'unprocessed_pseudogene'11DEGain76.050N/AOR2I1PN/A
1062406.23GIMAP7'protein_coding'12DEGain74.970N/AGIMAP7N/A
1072436.21SLCO2B1'protein_coding'214DEGain74.240N/ASLCO2B1N/A
1082456.21COL4A1'protein_coding'467DEGain74.080N/ACOL4A1N/A
1092476.21AQP1'protein_coding'410DEGain73.980N/AAQP1N/A
1102536.19TCN2'protein_coding'314DEGain73.020N/ATCN2N/A
1112566.18AC140077.17'protein_coding'110DEGain72.321EU AC140077.170
1122576.17MAF'protein_coding'23DEGain72.030N/AMAFN/A
1132586.17PDCD7'protein_coding'29AEGain12.085AB IR I4_AR20
1142616.14COL4A2'protein_coding'461DEGain70.490N/ACOL4A2N/A
1152636.13PTGDS'protein_coding'310DEGain69.991EU PTGDS0
1162656.12EFEMP1'protein_coding'416DEGain69.750N/AEFEMP1N/A
1172666.12ITGB2'protein_coding'827AEGain82.8913EU ES AB CE E5a_E6a71.43
1182716.11TMEM176A'protein_coding'17DEGain69.231EU TMEM176A0
1192756.09CCDC152'protein_coding'19DEGain68.075EU CCDC15250.00
1202766.08MMP2'protein_coding'113DEGain67.660N/AMMP2N/A
1212786.07SH2D1A'protein_coding'410DEGain67.410N/ASH2D1AN/A
1222796.07TIMP2'protein_coding'15DEGain67.250N/ATIMP2N/A
1232806.06CHCHD10'protein_coding'27AEGain7.411EU ER1a0
1242826.06TIMP1'protein_coding'411DEGain66.764EU ES TIMP133.33
1252846.06KLRK1'protein_coding'318DEGain66.690N/AKLRK1N/A
1262876.05UHRF1'protein_coding'219AEGain6.573EU AB E2_Ab0.00
1272886.04ASAH1'protein_coding'319DEGain28.5312EU ES AB ASAH180.00
1282896.04SAMD9L'protein_coding'27DEGain65.890N/ASAMD9LN/A
1292916.03CXCR6'protein_coding'12DEGain65.530N/ACXCR6N/A
1302946.03CCR4'protein_coding'12DEGain65.280N/ACCR4N/A
1312966.01IL33'protein_coding'17DEGain64.390N/AIL33N/A
1322985.99SERPINF1'protein_coding'18DEGain63.431EU SERPINF10
1332995.99BCL2'protein_coding'24DEGain63.359EU AB CE BCL266.67
1343015.97CCDC80'protein_coding'18DEGain62.550N/ACCDC80N/A
1353045.96MGP'protein_coding'14DEGain62.290N/AMGPN/A
1363065.96IFT122'protein_coding'432AEGain12.9511EU AB E19_Aa37.50
1373075.95ELF1'protein_coding'312AEGain8.582EU ER1b100.00
1383095.95MFAP4'protein_coding'28DEGain61.710N/AMFAP4N/A
1393105.95NNMT'protein_coding'13DEGain61.610N/ANNMTN/A
1403125.94TNC'protein_coding'528DEGain61.200N/ATNCN/A
1413135.93STAG3'protein_coding'440AEGain35.4712EU ES AB E4_Da44.44
1423145.93MRPS5'protein_coding'213AEGain8.952ES CE I7_AR20
1433155.92AC135457.2'protein_coding'27AEGain2.942EU AB E1_Da0
1443165.92TYROBP'protein_coding'15DEGain60.391EU TYROBP0
1453175.92CXCL10'protein_coding'25DEGain60.363EU CXCL1050.00
1463185.91DNAJC5B'protein_coding'16DEGain60.331EU DNAJC5B0
1473195.91COL6A3'protein_coding'850DEGain60.320N/ACOL6A3N/A
1483235.90FUS'protein_coding'319AEGain8.314EU AB E8_Da0.00
1493245.89DAB2'protein_coding'215DEGain59.270N/ADAB2N/A
1503255.89AE000659.1'IG_V_gene'12DEGain59.250N/AAE000659.1N/A
1513285.89IGFBP3'protein_coding'310DEGain59.151AB IGFBP30
1523325.88CTHRC1'protein_coding'27DEGain58.700N/ACTHRC1N/A
1533355.87CALD1'protein_coding'417DEGain58.440N/ACALD1N/A
1543365.87ZNF296'protein_coding'13AEGain8.731I1_SR20
1553425.85GPR34'protein_coding'38DEGain57.680N/AGPR34N/A
1563445.85C7'protein_coding'118DEGain57.500N/AC7N/A
1573465.84ABI3BP'protein_coding'567DEGain57.220N/AABI3BPN/A
1583525.82PLAU'protein_coding'313DEGain56.610N/APLAUN/A
1593555.81TIMD4'protein_coding'313DEGain56.040N/ATIMD4N/A
1603565.80GIMAP5'protein_coding'13DEGain55.860N/AGIMAP5N/A
1613575.80U66059.1'IG_V_gene'12DEGain55.770N/AU66059.1N/A
1623595.79VCAM1'protein_coding'414DEGain55.310N/AVCAM1N/A
1633605.79CLIC2'protein_coding'27DEGain55.270N/ACLIC2N/A
1643675.78LILRB4'protein_coding'522DEGain54.770N/ALILRB4N/A
1653685.78CYFIP1'protein_coding'131DEGain54.760N/ACYFIP1N/A
1663715.76SFRP4'protein_coding'16DEGain54.260N/ASFRP4N/A
1673735.76C10orf18'protein_coding'324AEGain30.6525EU AB E8a_E9a95.45
1683755.75U66061.1'IG_V_gene'12DEGain53.930N/AU66061.1N/A
1693775.75TGFBI'protein_coding'219DEGain53.700N/ATGFBIN/A
1703795.74NUMA1'protein_coding'428AEGain19.4625EU CE I2_AR495.65
1713815.74IFITM3'protein_coding'27DEGain53.563EU AB IFITM30.00
1723845.74ICOS'protein_coding'15DEGain53.380N/AICOSN/A
1733855.74C2'protein_coding'621DEGain53.360N/AC2N/A
1743865.73CD7'protein_coding'14DEGain53.181EU CD70
1753875.73CST7'protein_coding'14DEGain53.140N/ACST7N/A
1763905.72FKBP11'protein_coding'16AEGain9.472EU AB E5_Da0
1773915.72PSMB7'protein_coding'211AEGain9.3911EU AB IR E10_Aa50.00
1783925.72CTSC'protein_coding'412DEGain23.803EU AB CTSC100.00
1793935.71C7orf44'protein_coding'413AEGain26.971AB E7_Aa0
1803955.71NKG7'protein_coding'14DEGain52.190N/ANKG7N/A
1813965.70AC093520.4'protein_coding'12AEGain24.721IR Ix0
1823975.70CST3'protein_coding'38DEGain52.090N/ACST3N/A
1833985.70NUTF2'protein_coding'15AEGain5.531CE I4_AR20
1844015.68SLAMF8'protein_coding'25DEGain51.370N/ASLAMF8N/A
1854065.67HNRPA2B1'protein_coding'519AEGain11.1916EU ES AB IR E11_Da60.00
1864095.67ITM2A'protein_coding'16DEGain50.821ES ITM2A0
1874105.67NUDT17'protein_coding'18AEGain8.584EU AB CE E6_Da0.00
1884115.67CYP27A1'protein_coding'19DEGain50.810N/ACYP27A1N/A
1894145.65APBB2'protein_coding'221AEGain8.239EU ES ER9a37.50
1904165.64MALL'protein_coding'14AEGain7.414EU ES ER3a100.00
1914175.64RABGAP1'protein_coding'540AEGain7.8453EU ES AB E10_Db73.33
1924195.64GEMIN7'protein_coding'23AEGain11.646EU AB IR E2_Aa100.00
1934245.62SDC3'protein_coding'39DEGain49.140N/ASDC3N/A
1944265.61PXDN'protein_coding'123AEGain8.377EU ER4a66.67
1954295.61NCALD'protein_coding'511AEGain9.742EU ES ER4a0.00
1964305.61KLRB1'protein_coding'16DEGain22.403EU AB KLRB1100.00
1974325.60SIRPG'protein_coding'59DEGain48.500N/ASIRPGN/A
1984335.60IL28RA'protein_coding'512AEGain8.9413EU AB IR I7_SR266.67
1994355.59CFH'protein_coding'425DEGain48.080N/ACFHN/A
2004365.58AE000660.1'IG_V_gene'12DEGain47.950N/AAE000660.1N/A
2014385.58C1orf123'protein_coding'211AEGain6.303EU CE I2_AR1100.00
2024415.58CYBRD1'protein_coding'36DEGain47.750N/ACYBRD1N/A
2034445.56LMO2'protein_coding'27AEGain8.406EU ES E2a_E3a100.00
2044455.56TNFSF13B'protein_coding'16DEGain47.220N/ATNFSF13BN/A
2054465.56RPL31'protein_coding'816AEGain5.875EU AB ER2e66.67
2064495.55NCOA4'protein_coding'516AEGain47.612EU ES E2a_E4a0.00
2074505.55PLVAP'protein_coding'16DEGain46.830N/APLVAPN/A
2084515.55TMEM173'protein_coding'18DEGain46.790N/ATMEM173N/A
2094525.55COPG'protein_coding'124AEGain10.198EU E2a_E3a71.43
2104535.55SLCO3A1'protein_coding'110AEGain4.442EU AB E9_Da0
2114545.54TLR4'protein_coding'26DEGain46.640N/ATLR4N/A
2124555.54ZNF821'protein_coding'17AEGain6.661I3_SR50
2134565.54TIGIT'protein_coding'36DEGain46.592EU AB TIGIT0
2144575.54PTGR1'protein_coding'718AEGain21.6022EU ES AB ER2b78.95
2154615.53CXCL12'protein_coding'610DEGain46.060N/ACXCL12N/A
2164625.52FPR3'protein_coding'12DEGain46.040N/AFPR3N/A
2174655.52TAGLN'protein_coding'310DEGain45.753EU AB TAGLN100.00
2184685.51CD1C'protein_coding'26AEGain11.2411EU ES AB IR I50.00
2194695.50TNFRSF1A'protein_coding'110DEGain45.390N/ATNFRSF1AN/A
2204705.50IGFBP5'protein_coding'14DEGain45.350N/AIGFBP5N/A
2214735.50HNRNPD'protein_coding'415AEGain10.358EU AB IR E8_Da50.00
2224775.49SOD3'protein_coding'12DEGain44.960N/ASOD3N/A
2234795.49CMKLR1'protein_coding'26DEGain44.900N/ACMKLR1N/A
2244805.49ARF1GAP'protein_coding'419AEGain11.5010EU AB CE I8_AR125.00
2254825.48CSF1'protein_coding'514DEGain44.630N/ACSF1N/A
2264835.47LILRB1'protein_coding'726AEGain9.484EU AB E2_Ad0.00
2274875.47ACTN1'protein_coding'224DEGain44.230N/AACTN1N/A
2284885.46APAF1'protein_coding'427AEGain28.8313EU E7a_E8a50.00
2294895.46ACYP1'protein_coding'24AEGain10.068EU AB IR I3_AR850.00
2304915.45AE000659.1'IG_V_gene'12DEGain43.810N/AAE000659.1N/A
2314945.45KCMF1'protein_coding'210AEGain10.581CE I7_AR30
2324975.44PHF10'protein_coding'416AEGain22.0710EU AB E10_Aa100.00
2334985.43ANTXR1'protein_coding'628DEGain43.080N/AANTXR1N/A
2345025.42SDR39U1'protein_coding'39AEGain9.7212EU AB E4_Aa50.00
2355035.41RGL1'protein_coding'323DEGain42.660N/ARGL1N/A
2365065.41THBS1'protein_coding'325DEGain42.610N/ATHBS1N/A
2375075.41U66061.1'IG_V_gene'12DEGain42.560N/AU66061.1N/A
2385085.41GANAB'protein_coding'226AEGain9.362EU E1a_E2a0.00
2395105.41SEPT6'protein_coding'1121AEGain31.177EU ES CE I12_AR30.00
2405125.40ACOT7'protein_coding'615AEGain4.303EU ENST0000037784250.00
2415135.40MKL1'protein_coding'522AEGain12.684EU ES AB E4_Ac100.00
2425155.40TPR'protein_coding'254AEGain27.7662EU E6a_E7a93.44
2435195.39SAMD9'protein_coding'13DEGain41.941EU SAMD90
2445205.39CXCL13'protein_coding'15DEGain41.893EU CXCL1350.00
2455215.39SFXN4'protein_coding'419AEGain6.869EU AB IR I2_SR1100.00
2465225.39DPYSL3'protein_coding'215DEGain41.850N/ADPYSL3N/A
2475315.37SH2D3C'protein_coding'516AEGain7.522EU CE I2_AR30
2485345.36C17orf101'protein_coding'312AEGain5.814EU ES AB CE E1_Da100.00
2495355.36AL139008.10'protein_coding'12DEGain41.010N/AAL139008.10N/A
2505375.35USP30'protein_coding'318AEGain7.336EU AB E17_Da0.00
2515385.35SERPINE1'protein_coding'19DEGain40.660N/ASERPINE1N/A


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.44RPL7'protein_coding'517AELoss-433.6422EU AB IR ER7a80.00
2215.26HLA-DRB1'protein_coding'16AELoss-1411.672EU E2a_E3a100.00
3313.84BRE'protein_coding'721AELoss-1220.119EU AB CE I1_AR1100.00
4412.34IGHG4'IG_C_gene'29AELoss-125.015EU AB IR I4_AR10.00
5511.81RPL37'protein_coding'28AELoss-1287.217EU ES AB ER2b80.00
6611.32SCP2'protein_coding'521AELoss-42.108EU CE I12_AR1100.00
7910.91RPL28'protein_coding'15AELoss-3152.396EU AB ER3a50.00
81010.73RPL23A'protein_coding'39AELoss-412.844EU ER4a100.00
91110.72HLA-DQB1'protein_coding'817AELoss-100.354EU ES AB E6a_E9a0.00
101210.56FNIP1'protein_coding'320AELoss-59.9812EU ES AB CE I15_AR133.33
111310.44HLA-DPB1'protein_coding'818AELoss-61.676EU ES AB E8b_E9a33.33
12159.90HIF1A'protein_coding'418AELoss-54.751I12_SR20
13169.73H3F3A'protein_coding'411AELoss-31.977EU AB E2a_E3b33.33
14189.56PCNP'protein_coding'25AELoss-45.123EU CE I1_SR10
15199.53SMC4'protein_coding'429AELoss-80.4213EU AB CE I5_AR470.00
16229.33RAB3GAP2'protein_coding'239AELoss-34.0814EU AB IR I27_AR170.00
17268.94TAOK3'protein_coding'225AELoss-69.9719EU CE I3_AR581.82
18278.90SNX6'protein_coding'420AELoss-24.2712EU CE I11_AR290.00
19298.89PRPF18'protein_coding'419AELoss-188.748EU ES AB E3_Da40.00
20308.87KIAA1033'protein_coding'234AELoss-7.2516EU AB ENST0000031131757.14
21318.79AHSA2'protein_coding'723AELoss-11.3521EU ES AB IR CE E11_Db20.00
22328.78ANKRD17'protein_coding'344AELoss-21.005EU CE I1_AR6100.00
23348.72AC004448.3'pseudogene'12AELoss-7.335EU AB E2_Aa100.00
24358.70IL6ST'protein_coding'1029AELoss-3.615EU AB CE I18_AR40.00
25368.65AHR'protein_coding'213AELoss-35.824EU AB IR I11_SR10
26378.65RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.071EU E3a_E4a0
27388.58IFITM2'protein_coding'27AELoss-25.032EU AB E1c_E2a0
28398.54AC112777.7'rRNA_pseudogene'11DELoss-373.200N/AAC112777.7N/A
29428.46FAM172A'protein_coding'213AELoss-26.9411EU CE I10_AR2133.33
30438.46EIF4E'protein_coding'29AELoss-31.813EU E5a_E6a50.00
31458.44FAM126B'protein_coding'112AELoss-25.023EU CE I1_SR30
32468.37AL163011.3'rRNA_pseudogene'11DELoss-331.340N/AAL163011.3N/A
33478.35FOSB'protein_coding'14DELoss-326.282EU AB FOSB0
34488.29TBC1D4'protein_coding'221AELoss-17.8429EU AB CE ER9a91.30
35518.22AC091982.3'pseudogene'12AELoss-34.541AB E2_Aa0
36538.12FER'protein_coding'120AELoss-32.266EU CE I2_AR275.00
37548.10IGHD'IG_C_gene'27DELoss-274.160N/AIGHDN/A
38587.98MGST3'protein_coding'717AELoss-11.212EU ER10a0.00
39617.95DENND4A'protein_coding'132AELoss-27.4815EU IR I19_SR266.67
40627.91ESNA1'protein_coding'522AELoss-28.395EU CE I12_AR10.00
41637.90CCDC144B'protein_coding'221AELoss-20.764AB IR CE I70
42647.89HIST1H2AC'protein_coding'35AELoss-13.124EU AB E3_Aa0.00
43677.79C1orf71'protein_coding'315AELoss-18.581CE I2_AR10
44687.79VPS53'protein_coding'326AELoss-35.262CE I5_AR10
45697.78AC010970.2'processed_pseudogene'11DELoss-219.860N/AAC010970.2N/A
46707.78AC004866.1'rRNA_pseudogene'11DELoss-219.380N/AAC004866.1N/A
47737.75TRAPPC10'protein_coding'224AELoss-20.684EU CE I3_SR10
48747.74ZMAT1'protein_coding'212AELoss-2.105EU CE ER2a0.00
49757.74TM9SF3'protein_coding'115AELoss-12.358EU I4_SR1100.00
50777.74TMEM119'protein_coding'25AELoss-2.512EU AB E2_Ab0
51797.72GOLGA3'protein_coding'124AELoss-78.9310EU AB IR CE I1_AR240.00
52827.67ERBB2IP'protein_coding'628AELoss-11.3232EU ES CE E22a_E23a76.67
53847.65A2LD1'protein_coding'25AELoss-20.222AB CE I2_AR100
54867.62PPP2R5C'protein_coding'418AELoss-33.917EU ES CE I4_AR13100.00
55887.60NAPEPLD'protein_coding'16AELoss-11.784EU I1_SR40.00
56907.59CWC15'protein_coding'18AELoss-29.903EU E6a_E7a0.00
57917.58MGEA5'protein_coding'318AELoss-19.817EU IR CE I9_AR10
58987.39IKZF2'protein_coding'616AELoss-7.105EU AB E1_Da0.00
591027.36TMEM66'protein_coding'16AELoss-22.441CE I1_AR20
601037.35DMTF1'protein_coding'323AELoss-10.9119EU ES AB IR CE I5_AR125.00
611047.35TCTN1'protein_coding'827AELoss-2.3923EU ES AB CE E3_Aa58.82
621057.34SSU_rRNA_5'rRNA'11DELoss-161.670N/ASSU_rRNA_5N/A
631067.33SNX9'protein_coding'220AELoss-16.672EU CE I5_AR90
641117.19ADAM10'protein_coding'426AELoss-12.4611EU ES AB CE I4_AR128.57
651127.18WDR68'protein_coding'18AELoss-27.594EU E5a_E6a66.67
661137.17AFF4'protein_coding'427AELoss-13.764EU ES AB CE I1_AR1100.00
671147.17ANKRD11'protein_coding'622AELoss-17.335EU AB IR CE I2_SR20
681157.16RB1'protein_coding'127AELoss-10.2013EU CE I1_AR660.00
691177.15AC044839.16'rRNA_pseudogene'11DELoss-142.380N/AAC044839.16N/A
701207.12PPP1R10'protein_coding'120AELoss-10.176EU AB E2_Aa100.00
711217.12PNPLA8'protein_coding'213AELoss-17.382CE I4_AR20
721227.10C5orf5'protein_coding'123AELoss-11.769EU CE I10_AR183.33
731277.06HERC2'protein_coding'193AELoss-16.2853EU AB CE I2_AR656.00
741307.04DYRK1A'protein_coding'621AELoss-11.6511EU ES ER2a80.00
751327.03SORL1'protein_coding'148AELoss-19.855EU CE I14_AR20.00
761366.99CUL3'protein_coding'420AELoss-17.1114EU ES AB CE I7_AR166.67
771396.95EEA1'protein_coding'129AELoss-7.305EU CE I2_AR150.00
781406.94PLXND1'protein_coding'237AELoss-5.0016EU CE I9_AR221.43
791436.92COBLL1'protein_coding'521AELoss-7.4312EU AB E3_Da90.00
801456.90RHBDD1'protein_coding'311AELoss-15.094EU AB E1_Da0.00
811466.90ZEB2'protein_coding'520AELoss-5.465EU AB ER13a0.00
821476.89AKAP10'protein_coding'215AELoss-12.813EU CE I5_AR10
831486.88DTWD2'protein_coding'16AELoss-19.591CE I1_AR10
841496.87MON2'protein_coding'540AELoss-11.596EU CE I5_AR20.00
851506.87MOBKL3'protein_coding'616AELoss-8.297EU ES AB E2a_E5a66.67
861516.85AC010468.5'pseudogene'12AELoss-21.291EU ENST000003989810
871526.85TALDO1'protein_coding'18AELoss-79.353EU ER3a100.00
881546.83IGL@'IG_V_gene'12DELoss-113.810N/AIGL@N/A
891576.76PCBD2'protein_coding'25AELoss-48.275IR I3_AR110
901586.76ARMC8'protein_coding'428AELoss-10.926EU ES E1a_E4a80.00
911596.75USP9X'protein_coding'248AELoss-9.3546EU AB E30_Da83.72
921606.73PIK3CG'protein_coding'111AELoss-14.301AB E8_Aa0
931616.72SAPS1'protein_coding'124AELoss-70.981EU E17a_E18a0
941636.71SENP7'protein_coding'729AELoss-7.4710EU CE I4_AR250.00
951676.69MAP4K4'protein_coding'535AELoss-12.9211EU ES E17a_E18a70.00
961696.66ZC3HAV1'protein_coding'113AELoss-8.9212EU AB IR CE E9_Da83.33
971706.66SSU_rRNA_5'rRNA'11DELoss-101.160N/ASSU_rRNA_5N/A
981716.64FAM3C'protein_coding'110AELoss-13.134EU E6a_E7a0.00
991726.64ZNF609'protein_coding'19AELoss-47.575EU CE I1_AR120.00
1001736.63LRCH3'protein_coding'119AELoss-9.209EU ES CE I8_AR271.43
1011746.62CDC42SE2'protein_coding'26AELoss-15.111CE I3_AR90
1021756.61RANBP2'protein_coding'231AELoss-8.4122EU AB IR CE I12_SR140.00
1031796.60AC004833.1'pseudogene'13AELoss-65.861AB E2_Da0
1041806.60LACTB2'protein_coding'17AELoss-12.562EU CE I1_AR10
1051816.59NFAT5'protein_coding'316AELoss-10.9814EU CE I15_AR166.67
1061826.56ZNF85'protein_coding'26AELoss-9.684EU E3a_E4a33.33
1071846.55PJA2'protein_coding'212AELoss-10.007EU CE I1_AR250.00
1081856.55ZC3H6'protein_coding'216AELoss-15.109EU AB CE E1_Da66.67
1091876.54AL122127.6'IG_J_gene'11DELoss-92.770N/AAL122127.6N/A
1101886.53ZNF410'protein_coding'314AELoss-19.462EU ES ENST000003245930.00
1111896.52AC026713.5'protein_coding'239AELoss-5.3616EU AB CE I9_AR38.33
1121926.50CD40'protein_coding'414AELoss-16.7712EU ES AB ENST0000037227650.00
1131946.49IKZF1'protein_coding'68AELoss-11.903EU CE I3_AR140
1142006.45RPS27'protein_coding'37AELoss-63.182EU E3c_E4a0.00
1152016.44FOXN3'protein_coding'27AELoss-18.981CE I2_AR200
1162026.44SYTL3'protein_coding'321AELoss-7.5112EU AB IR I16_AR125.00
1172046.44CCDC138'protein_coding'217AELoss-5.884EU AB E2_Da100.00
1182066.43PARP14'protein_coding'422AELoss-4.0818EU IR CE I6_AR158.33
1192086.40GPR160'protein_coding'25AELoss-46.099EU CE I2_AR5100.00
1202096.40NPL'protein_coding'724AELoss-2.034EU ES AB E7_Da0.00
1212106.39SLC15A2'protein_coding'122AELoss-6.125EU CE I5_AR133.33
1222126.38ANKRD44'protein_coding'533AELoss-7.588EU CE I1_AR1416.67
1232136.38ZFX'protein_coding'516AELoss-8.038EU ES AB E4_Da100.00
1242156.37PSMA8'protein_coding'29AELoss-8.891CE I4_AR10
1252206.35ZNF588'protein_coding'310AELoss-3.1012EU AB IR I260.00
1262246.32C18orf1'protein_coding'59AELoss-7.8513EU ES AB CE E5_Aa80.00
1272266.31RPL3'protein_coding'417AELoss-785.0112EU AB IR ER9b50.00
1282276.31PCNT'protein_coding'249AELoss-5.8716EU AB IR E19_Aa75.00
1292306.29CCDC93'protein_coding'227AELoss-9.873AB E7_Aa0
1302316.29MAPK8IP3'protein_coding'340AELoss-11.319EU AB CE I1_AR233.33
1312326.28MTMR6'protein_coding'216AELoss-12.252CE I1_SR10
1322346.26RBM6'protein_coding'121AELoss-41.547EU AB CE I2_SR10.00
1332386.25ZNF738'protein_coding'27AELoss-10.603EU E4a_E5b100.00
1342396.25ZCCHC6'protein_coding'735AELoss-15.1321EU AB IR CE I966.67
1352416.22AC005726.1'pseudogene'12AELoss-15.582AB E1_Da0
1362426.22CASK'protein_coding'835AELoss-7.8011EU AB CE I5_AR50.00
1372446.21ZNF44'protein_coding'419AELoss-14.694EU IR CE I3_AR40
1382466.21FUSIP1'protein_coding'615AELoss-11.013AB E1_Ad0
1392486.20UGCG'protein_coding'19AELoss-10.801I5_SR10
1402496.20TXLNB'protein_coding'212AELoss-16.274CE I2_AR40
1412506.20PLEKHK1'protein_coding'417AELoss-7.066EU ES E1a_E2a80.00
1422516.20NT5C2'protein_coding'521AELoss-23.7211EU ES AB I1_SR887.50
1432526.19NR4A1'protein_coding'615DELoss-73.247EU AB NR4A10.00
1442546.19STIM2'protein_coding'215AELoss-19.007EU CE I1_SR566.67
1452556.19ITSN2'protein_coding'646AELoss-14.4616EU ES CE I4_AR171.43
1462596.15GMDS'protein_coding'213AELoss-37.878EU CE I9_SR750.00
1472606.14EEF1A1'protein_coding'619AELoss-12.966EU AB E7a_E8a0.00
1482626.14CSAD'protein_coding'527AELoss-6.665EU AB CE E4_Da100.00
1492646.13WDR43'protein_coding'221AELoss-12.552CE I1_SR10
1502676.12D87024.1'miRNA'11DELoss-69.540N/AD87024.1N/A
1512686.12AC096767.3'IG_V_gene'12DELoss-69.440N/AAC096767.3N/A
1522696.12AC007599.6'rRNA_pseudogene'11DELoss-69.360N/AAC007599.6N/A
1532706.12DDX50'protein_coding'115AELoss-10.559EU AB CE I1_AR183.33
1542726.11CPEB2'protein_coding'514AELoss-5.546EU CE I3_AR350.00
1552736.10ESR2'protein_coding'614AELoss-11.304EU CE I9_SR40
1562746.10VPS11'protein_coding'117AELoss-7.974EU E2a_E3a100.00
1572776.08GCDH'protein_coding'112AELoss-65.543IR I6_AR20
1582816.06ZNF682'protein_coding'37AELoss-9.942EU E3a_E4a0.00
1592836.06AC013414.7'protein_coding'126AELoss-5.622EU CE I1_AR20
1602856.06TMBIM4'protein_coding'312AELoss-9.434EU AB E8_Da50.00
1612866.05C10orf118'protein_coding'321AELoss-6.935EU CE I2_AR20.00
1622906.04C1orf103'protein_coding'24AELoss-10.881AB E1_Da0
1632926.03ZNF680'protein_coding'25AELoss-4.572EU CE I1_AR90
1642936.03TTC7A'protein_coding'528AELoss-12.543EU ER5a50.00
1652956.01ZDHHC14'protein_coding'210AELoss-6.241I1_SR180
1662976.01AC116654.4'IG_V_gene'12DELoss-64.320N/AAC116654.4N/A
1673005.97AB019440.1'IG_V_gene'12DELoss-27.462EU AB019440.1100.00
1683025.97PHIP'protein_coding'242AELoss-11.3011EU CE I4_SR112.50
1693035.97MAP3K5'protein_coding'336AELoss-4.4610EU ES CE I1_AR425.00
1703055.96PI4KA'protein_coding'258AELoss-11.2819EU AB ER50b52.94
1713085.95PPARA'protein_coding'517AELoss-3.304EU AB CE I8_AR20.00
1723115.94TGFBR2'protein_coding'311AELoss-8.981CE I1_AR20
1733205.91RAPGEF1'protein_coding'837AELoss-14.8915EU ES AB CE I14_SR160.00
1743215.91PALLD'protein_coding'426AELoss-4.0614EU ES AB E3a_E4a66.67
1753225.91MAML3'protein_coding'310AELoss-10.054EU AB CE I5_AR16100.00
1763265.89GBA3'protein_coding'15AELoss-10.5016IR I1_SR170
1773275.89NFATC2'protein_coding'315AELoss-10.732CE I4_AR10
1783295.89TBC1D9B'protein_coding'222AELoss-13.341CE I7_AR10
1793305.88TRIB2'protein_coding'37AELoss-3.512EU AB ER3a0
1803315.88DOCK6'protein_coding'148AELoss-7.413EU CE I39_AR30
1813335.87FILIP1L'protein_coding'410AELoss-3.031EU ER5a0
1823345.87ETNK1'protein_coding'312AELoss-4.867EU ES ER3a33.33
1833375.86DOPEY2'protein_coding'238AELoss-9.7014EU I2_SR333.33
1843385.86TNKS'protein_coding'127AELoss-8.972AB CE I11_AR10
1853395.86DALRD3'protein_coding'317AELoss-14.956AB CE E13_Da0
1863405.86IREB2'protein_coding'122AELoss-12.163IR I1_SR10
1873415.86PAG1'protein_coding'19AELoss-8.762AB CE E7_Da0
1883435.85VAV3'protein_coding'228AELoss-12.8115EU CE I1_SR166.67
1893455.85AL662782.3'protein_coding'17AELoss-9.562EU AB E4a_E5a0
1903475.83IGLV3-21'IG_V_gene'12DELoss-57.020N/AIGLV3-21N/A
1913485.83TMED5'protein_coding'37AELoss-4.812EU CE I1_AR10
1923495.83GCSH'protein_coding'15AELoss-9.001EU E2a_E3a0
1933505.83IGHA1'IG_C_gene'13DELoss-56.690N/AIGHA1N/A
1943515.82SMARCA5'protein_coding'124AELoss-5.556EU ES E13a_E15a80.00
1953535.82PKN2'protein_coding'428AELoss-5.037EU I1_SR120.00
1963545.81TADA2L'protein_coding'321AELoss-43.002EU CE I11_AR60
1973585.79NUPL1'protein_coding'520AELoss-10.021CE I3_AR20
1983615.79BEND4'protein_coding'28AELoss-8.522ES AB E3_Da0
1993625.79AP001011.6'protein_coding'17AELoss-3.803EU IR I10.00
2003635.78KCNMA1'protein_coding'1351AELoss-4.209EU CE I2_AR1725.00
2013645.78KIAA1432'protein_coding'331AELoss-11.9814EU CE I1_AR175.00
2023655.78PTPN22'protein_coding'322AELoss-4.697EU I18_SR220.00
2033665.78AC008267.6'protein_coding'15AELoss-6.711ES E1a_E4a0
2043695.77WDR39'protein_coding'17AELoss-11.571I1_SR10
2053705.77ZDHHC20'protein_coding'322AELoss-6.816EU AB IR CE I3_AR3100.00
2063725.76APP'protein_coding'719AELoss-2.566EU ES AB E7_Da0.00
2073745.76CCDC132'protein_coding'331AELoss-3.6311EU ER21a40.00
2083765.75ZNF619'protein_coding'27AELoss-7.863EU ER5a50.00
2093785.75RBKS'protein_coding'18AELoss-397.004EU AB CE I1_AR10.00
2103805.74AC008507.11'pseudogene'12AELoss-25.331AB E1_Da0
2113825.74PGS1'protein_coding'319AELoss-12.1412EU AB CE I7_AR30
2123835.74NUP98'protein_coding'739AELoss-27.7511EU ES AB CE I25_AR250.00
2133885.73PAOX'protein_coding'920AELoss-8.5212EU ES AB E7_Aa16.67
2143895.73MYO1E'protein_coding'128AELoss-51.563EU IR I10_SR10
2153945.71RC3H2'protein_coding'631AELoss-10.464EU AB CE E4_Da0
2163995.69MAN1A1'protein_coding'214AELoss-8.251CE I2_AR10
2174005.69TRIM55'protein_coding'512AELoss-11.972EU CE I4_AR20
2184025.68SYNJ2'protein_coding'532AELoss-13.3616EU ES CE I4_AR350.00
2194035.68TOR1AIP2'protein_coding'16AELoss-7.793CE I2_AR20
2204045.67SETD7'protein_coding'313AELoss-9.0110EU AB CE I1_AR150.00
2214055.67KCNN4'protein_coding'211AELoss-7.114EU ES AB CE E5a_E7a0.00
2224075.67AL645929.4'protein_coding'17AELoss-19.976EU AB E6_Aa25.00
2234085.67ARID4B'protein_coding'427AELoss-10.9014EU ES IR CE I1550.00
2244125.66FAM62B'protein_coding'327AELoss-8.0918EU AB CE I13_AR475.00
2254135.65MCTP2'protein_coding'225AELoss-31.5110EU AB CE I1_AR128.57
2264155.65GCN1L1'protein_coding'158AELoss-13.1145EU IR I57_SR166.67
2274185.64CLASP1'protein_coding'450AELoss-8.5229EU ES CE I2_AR1559.26
2284205.63UBE4B'protein_coding'533AELoss-8.973EU E3a_E4a0.00
2294215.63ZNF813'protein_coding'26AELoss-7.785ES CE I1_SR20
2304225.62ALCAM'protein_coding'316AELoss-7.242EU I1_SR20
2314235.62AP006216.9'protein_coding'327AELoss-12.7511EU CE I1_SR10.00
2324255.62OXNAD1'protein_coding'19AELoss-11.276EU AB E1_Da33.33
2334275.61PAPLN'protein_coding'536AELoss-4.7514EU IR I2_SR330.00
2344285.61SMC5'protein_coding'125AELoss-10.1412EU ES CE I1_AR260.00
2354315.60AL122127.6'IG_J_gene'11DELoss-48.540N/AAL122127.6N/A
2364345.59NFIC'protein_coding'514AELoss-6.945EU CE I6_AR166.67
2374375.58NUDT4'protein_coding'15AELoss-9.562EU E3a_E4a100.00
2384395.58AC073416.8'IG_V_gene'12DELoss-47.900N/AAC073416.8N/A
2394405.58CBWD1'protein_coding'827AELoss-8.756EU AB ER14a0.00
2404425.58SFRS2IP'protein_coding'419AELoss-3.7317EU ES AB E5_Da86.67
2414435.57PHF3'protein_coding'218AELoss-7.8114EU AB E4_Da91.67
2424475.56NLRP1'protein_coding'419AELoss-5.595EU IR I90.00
2434485.56CLEC17A'protein_coding'216DELoss-21.7711EU ES CLEC17A70.00
2444585.53NLRC3'protein_coding'325AELoss-8.945EU AB E10a_E11a0.00
2454595.53SLC38A2'protein_coding'218AELoss-10.199EU AB CE E2_Da66.67
2464605.53SCFD1'protein_coding'328AELoss-8.422EU CE I2_AR20
2474635.52TMEM156'protein_coding'210AELoss-7.1911EU ES AB CE ER1a100.00
2484645.52PPP1R15A'protein_coding'13DELoss-45.812EU PPP1R15A100.00
2494665.51GMCL1'protein_coding'114AELoss-7.915EU CE I2_AR2100.00
2504675.51LY75'protein_coding'443AELoss-2.5924EU AB CE I1_SR173.68
2514715.50TPP2'protein_coding'433AELoss-9.0710EU ES AB E2a_E3a16.67