Summary page for comparison: 'DLBCL_vs_BCell2' (HS0640_vs_HS0670) - Project: Lymphoma


Download complete candidate list as tab delimited text file: DLBCL_vs_BCell2.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 7,460 (of 36,953 possible genes)

DE Genes: 3,332

AE Genes: 5,350

Alternative Exon Usage (EU) Genes: 4,019

Alernative Exon Skipping (ES) Genes: 1,028

Alternative Exon Boundary (AB) Genes: 1,332

Intron Retention (IR) Genes: 249

Cryptic Exon (CE) Genes: 470


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.57BRE'protein_coding'721AELoss-905.4911EU ES AB CE I1_AR180.00
2212.64AC022210.8'pseudogene'13AEGain168.672ES AB E1_Da0
3311.89HLA-DRB1'protein_coding'16AELoss-179.771EU E2a_E3a0
449.53RPL15'protein_coding'26AELoss-28.144EU AB ER2a50.00
558.59SEPP1'protein_coding'14DEGain385.970N/ASEPP1N/A
668.35HS2ST1'protein_coding'415AEGain15.153EU ER10a100.00
778.29CXCL9'protein_coding'14DEGain313.910N/ACXCL9N/A
888.12HLA-DQB1'protein_coding'817AELoss-26.901ES E6a_E9a0
998.05AC004448.3'pseudogene'12AELoss-2.092EU AB E1_Da0
10108.01APOC1'protein_coding'15DEGain258.010N/AAPOC1N/A
11117.95CCL19'protein_coding'26DEGain248.000N/ACCL19N/A
12127.81CCL21'protein_coding'26DEGain223.740N/ACCL21N/A
13137.79LUM'protein_coding'13DEGain220.970N/ALUMN/A
14147.74TCTN1'protein_coding'827AELoss-4.6620EU ES AB CE E6_Da64.29
15157.67BGN'protein_coding'211DEGain203.860N/ABGNN/A
16167.58TMEM77'protein_coding'211AEGain83.313EU E1a_E2a100.00
17177.48D87015.2'miRNA'11DELoss-178.140N/AD87015.2N/A
18187.48FOSB'protein_coding'14DELoss-177.992AB FOSB0
19197.45APOE'protein_coding'14DEGain174.362EU APOE0.00
20207.44TNFRSF6B'protein_coding'1049AEGain17.6719EU AB E36_Da23.08
21217.44SLC40A1'protein_coding'18DEGain173.410N/ASLC40A1N/A
22227.32NCF1'protein_coding'111AELoss-11.753EU ER1a0.00
23237.28CCDC152'protein_coding'19AELoss-2.7110EU ER1a77.78
24247.26IGL@'IG_V_gene'12DELoss-153.800N/AIGL@N/A
25257.18COL3A1'protein_coding'254DEGain144.950N/ACOL3A1N/A
26267.15YPEL3'protein_coding'39AEGain43.132EU ER1a100.00
27277.10GTF2I'protein_coding'335AELoss-17.901ES E30a_E32a0
28287.07IL16'protein_coding'934AELoss-14.792EU AB E21a_E22a0
29296.97TIMP3'protein_coding'28DEGain125.490N/ATIMP3N/A
30306.95SPTBN1'protein_coding'338AEGain14.234EU ES ER2a66.67
31316.95SSH3BP'protein_coding'1319AEGain10.8514EU ES AB ER4a75.00
32326.91HLA-A'protein_coding'723AELoss-12.2614EU ES AB IR E7a_E9a33.33
33336.88PLA2G2D'protein_coding'14DEGain117.860N/APLA2G2DN/A
34346.85COL1A1'protein_coding'151DEGain115.500N/ACOL1A1N/A
35356.80HNRNPA1'protein_coding'213AELoss-109.913EU E3a_E4a50.00
36366.79SPARC'protein_coding'110DEGain110.373EU SPARC50.00
37376.77ITGB7'protein_coding'216AEGain14.346EU IR I4_AR150.00
38386.75EIF4E'protein_coding'29AELoss-32.434EU E5a_E6a100.00
39396.74A2M'protein_coding'240DEGain106.720N/AA2MN/A
40406.73COL1A2'protein_coding'254DEGain106.010N/ACOL1A2N/A
41416.72DCN'protein_coding'610DEGain105.070N/ADCNN/A
42426.71AC034193.5'protein_coding'12AELoss-11.362EU ER2a100.00
43436.70IGHE'IG_C_gene'211DEGain104.283EU CE IGHE0.00
44446.65ASNS'protein_coding'316AELoss-11.422EU E1a_E2b100.00
45456.65AC004833.1'pseudogene'13AELoss-18.052AB E2_Da0
46466.65C1S'protein_coding'634DEGain39.899EU AB C1S40.00
47476.62HSPA8'protein_coding'211AELoss-58.022EU ES E2a_E4a0.00
48486.61CCL2'protein_coding'13DEGain97.750N/ACCL2N/A
49496.58FCER1G'protein_coding'27AELoss-2.352EU AB E6_Aa0
50506.57NUTF2'protein_coding'15AEGain14.081CE I4_AR20
51516.57GPNMB'protein_coding'314DEGain95.187EU GPNMB66.67
52526.57SAMSN1'protein_coding'516AELoss-16.081ES E7a_E9a0
53536.57POSTN'protein_coding'524DEGain94.730N/APOSTNN/A
54546.56IGHG4'IG_C_gene'29AELoss-2.684EU AB E1_Da0.00
55556.54TBC1D4'protein_coding'221AELoss-8.8020EU CE ER9a100.00
56566.51IFITM3'protein_coding'27DEGain36.914EU AB IFITM3100.00
57576.49D87024.1'miRNA'11DELoss-90.090N/AD87024.1N/A
58586.45BCL2'protein_coding'24DEGain35.7120EU AB CE BCL2100.00
59596.42SLC37A1'protein_coding'323AELoss-14.3223AB IR E6_Da0
60606.41IGLV3-21'IG_V_gene'12DELoss-85.080N/AIGLV3-21N/A
61616.40IL32'protein_coding'613DEGain34.875EU ES IL3275.00
62626.36FN1'protein_coding'1050DEGain82.2710EU AB FN10.00
63636.35ADAMDEC1'protein_coding'215DEGain33.848EU ADAMDEC157.14
64646.35HNRPA2B1'protein_coding'519AELoss-53.291ES E8a_E10a0
65656.34LYZ'protein_coding'14DEGain80.850N/ALYZN/A
66666.33NFIC'protein_coding'514AELoss-5.348EU AB CE E7_Aa60.00
67676.33SPARCL1'protein_coding'111DEGain80.600N/ASPARCL1N/A
68686.33BCL2A1'protein_coding'23AEGain11.883EU E2a_E3a100.00
69696.33SERPING1'protein_coding'617DEGain80.180N/ASERPING1N/A
70706.28ENPP2'protein_coding'226DEGain77.9010EU ENPP20.00
71716.27P2RY5'protein_coding'28AELoss-4.121EU ER4a0
72726.27CSDA'protein_coding'212AEGain14.711EU ER1a0
73736.25BPNT1'protein_coding'315AEGain11.274EU ES AB E9c_E9d0.00
74746.25CHCHD10'protein_coding'27AEGain9.812EU ER1a100.00
75756.23FSTL1'protein_coding'111DEGain75.110N/AFSTL1N/A
76766.20SGK1'protein_coding'418AEGain15.304EU ES E1a_E2a0.00
77776.18C3'protein_coding'141DEGain72.4814EU C330.77
78786.17C1QB'protein_coding'13DEGain71.820N/AC1QBN/A
79796.15AHSA2'protein_coding'723AELoss-9.719EU AB IR E11_Db0
80806.14RARRES1'protein_coding'16DEGain70.640N/ARARRES1N/A
81816.13PGAM1'protein_coding'14AELoss-44.584EU ER3a66.67
82826.12AC010422.7'protein_coding'19AEGain13.447EU AB IR E6_Aa0
83836.10STAG3'protein_coding'440AELoss-6.845EU AB E21_Aa0.00
84846.10CD52'protein_coding'12AELoss-10.992EU AB E2_Aa0
85856.08AB019438.1'IG_V_gene'12DELoss-67.750N/AAB019438.1N/A
86866.07PAOX'protein_coding'920AELoss-7.217EU ES AB E7_Aa33.33
87876.07TMBIM4'protein_coding'312AELoss-12.611AB E8_Da0
88886.06IGFBP7'protein_coding'15DEGain66.803EU IGFBP70.00
89896.05C1QA'protein_coding'311DEGain66.298EU ES AB C1QA20.00
90906.02IGHA1'IG_C_gene'13DELoss-64.970N/AIGHA1N/A
91916.02NCF1C'protein_coding'213AELoss-7.222EU ER1b100.00
92926.01IGHD'IG_C_gene'27DELoss-64.560N/AIGHDN/A
93936.01TIMP1'protein_coding'411DEGain64.353EU TIMP1100.00
94945.99IL18'protein_coding'16DEGain63.442EU IL180.00
95955.98THY1'protein_coding'14DEGain63.290N/ATHY1N/A
96965.98MMP9'protein_coding'113DEGain63.200N/AMMP9N/A
97975.97TPT1'protein_coding'412AELoss-13.831ES E2a_E4a0
98985.97HLA-DQB2'protein_coding'49AEGain5.673EU E4a_E5a50.00
99995.96TMEM176B'protein_coding'29DEGain62.382EU TMEM176B0.00
1001005.96FNBP1'protein_coding'525AELoss-10.2210EU ES AB CE E12a_E15b100.00
1011015.94HN1'protein_coding'512AELoss-15.054EU AB ER5a0.00
1021025.91AB019440.1'IG_V_gene'12DELoss-60.240N/AAB019440.1N/A
1031035.90CTSL1'protein_coding'414DEGain59.780N/ACTSL1N/A
1041045.90CBWD2'protein_coding'319AELoss-11.342EU ER15a0.00
1051055.88AC004053.1'protein_coding'432AELoss-11.003EU AB ER2b0.00
1061065.87GZMA'protein_coding'15DEGain58.570N/AGZMAN/A
1071075.86CLIP3'protein_coding'114AELoss-3.583EU CE I7_AR2100.00
1081085.86MNDA'protein_coding'17DEGain57.890N/AMNDAN/A
1091095.84TOMM40'protein_coding'213AEGain8.303EU E1a_E2a100.00
1101105.83RPSA'protein_coding'17AELoss-11.833EU E3a_E4a0.00
1111115.83SH3YL1'protein_coding'727AELoss-6.542EU ER13a0.00
1121125.83C1QC'protein_coding'37DEGain56.811EU C1QC0
1131135.78WTAP'protein_coding'311AEGain12.053EU AB CE I1_AR20
1141145.76C14orf104'protein_coding'56AELoss-6.393EU AB E1_Db100.00
1151155.75ZCCHC10'protein_coding'25AELoss-12.992EU ES E3a_E5a0.00
1161165.75CD40'protein_coding'414AELoss-12.717EU ES AB ENST000003722760.00
1171175.74RPS24'protein_coding'39AEGain13.973EU ES ENST0000036083050.00
1181185.74RGS2'protein_coding'15DELoss-53.531EU RGS20
1191195.73GZMK'protein_coding'15DEGain53.101EU GZMK0
1201205.71ATAD5'protein_coding'123AEGain6.161AB E22_Aa0
1211215.70EFEMP1'protein_coding'416DEGain52.050N/AEFEMP1N/A
1221225.70PICALM'protein_coding'523AEGain9.098EU ES ER18a85.71
1231235.69MS4A6A'protein_coding'17DEGain51.684EU AB IR MS4A6A0
1241245.68CCL18'protein_coding'13DEGain51.421EU CCL180
1251255.68SC-9C5.12'protein_coding'35AEGain3.8712EU ES IR I1_SR3100.00
1261265.65FABP4'protein_coding'14DEGain50.340N/AFABP4N/A
1271275.65MAML1'protein_coding'28AELoss-11.773EU AB CE E2_Da0
1281285.64CSF1R'protein_coding'224DEGain49.770N/ACSF1RN/A
1291295.62AQP1'protein_coding'410DEGain49.230N/AAQP1N/A
1301305.61NR4A1'protein_coding'615DELoss-48.926EU ES AB NR4A10.00
1311315.61UCHL3'protein_coding'210AEGain10.582AB CE I9_AR10
1321325.61MRPL15'protein_coding'15AELoss-12.602EU ES E3a_E5a0.00
1331335.60RBM5'protein_coding'227AELoss-13.155EU ES AB E16a_E18a0.00
1341345.60OR2I1P'unprocessed_pseudogene'11DEGain48.490N/AOR2I1PN/A
1351355.60ZNF410'protein_coding'314AELoss-25.942EU ES E9a_E11a0.00
1361365.59AC140077.17'protein_coding'110DEGain48.031EU AC140077.170
1371375.58COL4A1'protein_coding'467DEGain47.730N/ACOL4A1N/A
1381385.54PLEKHK1'protein_coding'417AELoss-8.2710EU ER4a100.00
1391395.53C7'protein_coding'118DEGain46.290N/AC7N/A
1401405.52COL4A2'protein_coding'461DEGain45.810N/ACOL4A2N/A
1411415.50TIMD4'protein_coding'313DEGain45.290N/ATIMD4N/A
1421425.50PDCD7'protein_coding'29AEGain10.235AB IR I4_AR10
1431435.50MMP2'protein_coding'113DEGain45.120N/AMMP2N/A
1441445.49GUK1'protein_coding'1536AELoss-10.132EU I4_SR30
1451455.46SH3GLB2'protein_coding'419AEGain7.601EU ER1b0
1461465.45IGHV4-31'IG_C_gene'27AEGain2.322EU E4a_E5a0.00
1471475.45SLC9A1'protein_coding'420AEGain12.251EU E11a_E12a0
1481485.44IGHJ3P'IG_pseudogene'11DELoss-43.560N/AIGHJ3PN/A
1491495.44AB019439.1'IG_V_gene'12DELoss-43.420N/AAB019439.1N/A
1501505.44JUN'protein_coding'11DELoss-43.320N/AJUNN/A
1511515.43FOXP3'protein_coding'315DEGain43.010N/AFOXP3N/A
1521525.43PHTF2'protein_coding'321AELoss-20.373ES AB CE E2_Aa0
1531535.42GMDS'protein_coding'213AELoss-7.055EU CE I9_AR8100.00
1541545.42TNFRSF13C'protein_coding'13AEGain7.693EU IR E1a_E2a0
1551555.42CHKB'protein_coding'111AELoss-11.365EU AB ER10a0.00
1561565.42EXOSC8'protein_coding'315AEGain10.312AB E4_Da0
1571575.42AUP1'protein_coding'217AELoss-7.536EU ES AB E3a_E6a100.00
1581585.41XYLT1'protein_coding'112AEGain8.2110AB IR I8_SR20
1591595.41IGHA2'IG_C_gene'25AELoss-402.268EU AB CE E3a_E4a25.00
1601605.40AFF3'protein_coding'429AELoss-7.155ES AB CE E1a_E5a100.00
1611615.39C9orf86'protein_coding'625AEGain8.762AB E1_Ab0
1621625.37PTPRC'protein_coding'1143AEGain21.583EU ES E4a_E9a50.00
1631635.36IL33'protein_coding'17DEGain41.190N/AIL33N/A
1641645.36MGP'protein_coding'14DEGain41.120N/AMGPN/A
1651655.36KIF15'protein_coding'236AEGain7.674EU ES AB E24_Aa50.00
1661665.36IGLV3-1'IG_V_gene'12DELoss-40.940N/AIGLV3-1N/A
1671675.35AL122127.6'IG_J_gene'11DELoss-40.890N/AAL122127.6N/A
1681685.32PTK2B'protein_coding'438AELoss-7.706EU CE E28a_E29a100.00
1691695.32PPP1R15A'protein_coding'13DELoss-40.020N/APPP1R15AN/A
1701705.32PSPH'protein_coding'312AEGain44.962ES AB ENST000003662330
1711715.31PLA2G7'protein_coding'112DEGain39.750N/APLA2G7N/A
1721725.31MFAP4'protein_coding'28DEGain39.650N/AMFAP4N/A
1731735.31CUX1'protein_coding'535AELoss-9.9921EU ES AB CE ENST0000033899066.67
1741745.30CCDC80'protein_coding'18DEGain39.480N/ACCDC80N/A
1751755.30C17orf44'protein_coding'13AELoss-3.522EU AB E2_Da0
1761765.30CD14'protein_coding'24DEGain39.310N/ACD14N/A
1771775.29TMEM176A'protein_coding'17DEGain39.082AB CE TMEM176A0
1781785.28TCN2'protein_coding'314DEGain38.890N/ATCN2N/A
1791795.28ULK3'protein_coding'115AELoss-6.741EU E13a_E14a0
1801805.28C16orf7'protein_coding'322AELoss-8.5210EU ES AB CE E6_Aa0.00
1811815.28RASSF4'protein_coding'515DEGain38.732EU ES RASSF40.00
1821825.27WDR66'protein_coding'223AELoss-6.1017EU E16a_E17a62.50
1831835.26CRELD2'protein_coding'415AEGain8.297EU AB E1_Ab66.67
1841845.26WSB1'protein_coding'29AELoss-26.002ES E1a_E3a0.00
1851855.24NNMT'protein_coding'13DEGain37.820N/ANNMTN/A
1861865.24IGHG3'IG_C_gene'610DELoss-37.765EU AB CE IGHG30.00
1871875.24PLVAP'protein_coding'16DEGain37.720N/APLVAPN/A
1881885.23FAM3C'protein_coding'110AELoss-16.163EU ES E8a_E9a100.00
1891895.22AB019438.1'IG_V_gene'12DELoss-37.300N/AAB019438.1N/A
1901905.21GTF2H2B'protein_coding'117AELoss-10.143EU ER5a0.00
1911915.20TIMP2'protein_coding'15DEGain36.672EU TIMP20.00
1921925.18COL6A1'protein_coding'135DEGain36.1512EU COL6A10.00
1931935.16IGLV2-5'IG_pseudogene'11DELoss-35.870N/AIGLV2-5N/A
1941945.16AFMID'protein_coding'516AEGain8.5312EU ES AB IR CE E6_Aa33.33
1951955.16CD46'protein_coding'1515AELoss-4.632ES CE I8_AR20
1961965.15ACTR6'protein_coding'111AELoss-8.761EU E1a_E2a0
1971975.15APBB2'protein_coding'221AEGain8.085EU ES ER9a25.00
1981985.13CST3'protein_coding'38DEGain34.950N/ACST3N/A
1991995.12RHBDD1'protein_coding'311AELoss-9.713EU AB CE E1_Da0
2002005.12CYP27A1'protein_coding'19DEGain34.880N/ACYP27A1N/A
2012015.12AL645929.4'protein_coding'17AELoss-10.6311EU ES AB E2a_E3a85.71
2022025.12MOBKL3'protein_coding'616AELoss-10.185EU ES E2a_E5a50.00
2032035.11PAPOLG'protein_coding'222AELoss-7.451ES E14a_E16a0
2042045.11MAF1'protein_coding'18AELoss-8.153AB IR I5_AR10
2052055.11HSPA6'protein_coding'11DELoss-34.520N/AHSPA6N/A
2062065.10AB019438.1'IG_V_gene'12DELoss-34.270N/AAB019438.1N/A
2072075.09SFRP4'protein_coding'16DEGain34.130N/ASFRP4N/A
2082085.09SIRPA'protein_coding'413DEGain16.785EU SIRPA50.00
2092095.08NCALD'protein_coding'511AEGain6.702EU CE ER4a0
2102105.07STK17A'protein_coding'17AELoss-6.021ES E3a_E5a0
2112115.07POLR2J2'protein_coding'312AEGain135.674EU ER7a0.00
2122125.06HNRNPH2'protein_coding'512AELoss-5.586EU ES IR Ix75.00
2132135.06U11'snRNA'11DELoss-33.280N/AU11N/A
2142145.06ORC4L'protein_coding'317AELoss-9.033EU E2a_E3a0.00
2152155.05AB019441.1'IG_V_gene'12DELoss-16.482EU AB019441.1100.00
2162165.05U66059.1'IG_V_gene'12DEGain33.201EU U66059.10
2172175.05AB019439.1'IG_V_gene'12DELoss-33.190N/AAB019439.1N/A
2182185.04MOSC2'protein_coding'311AELoss-8.475EU AB E6_Da0.00
2192195.03IGFBP3'protein_coding'310DEGain32.752EU AB IGFBP30
2202205.03IGLV3-25'IG_V_gene'12DELoss-32.730N/AIGLV3-25N/A
2212215.02AC104692.1'pseudogene'12DEGain32.380N/AAC104692.1N/A
2222225.01CTSD'protein_coding'212DEGain16.133EU AB CTSD100.00
2232235.01HMGB1'protein_coding'718AEGain5.984EU ES E4a_E4c0.00
2242245.00DAB2'protein_coding'215DEGain32.060N/ADAB2N/A
2252254.99SASH3'protein_coding'18AELoss-6.031ES E2a_E4a0
2262264.99TNFRSF1A'protein_coding'110DEGain31.820N/ATNFRSF1AN/A
2272274.99MS4A7'protein_coding'27AELoss-6.508EU AB CE E3a_E4a66.67
2282284.99CTHRC1'protein_coding'27DEGain31.680N/ACTHRC1N/A
2292294.98AB019439.1'IG_V_gene'12DELoss-31.600N/AAB019439.1N/A
2302304.98PIK3AP1'protein_coding'320AELoss-9.402ES E16a_E19a0.00
2312314.98HSPA1B'protein_coding'11DELoss-31.560N/AHSPA1BN/A
2322324.97CFH'protein_coding'425DEGain31.420N/ACFHN/A
2332334.97TRIM11'protein_coding'28AEGain9.181EU ER1a0
2342344.97AB019440.1'IG_V_gene'12DELoss-31.281EU AB019440.10
2352354.97PLAU'protein_coding'313DEGain31.280N/APLAUN/A
2362364.97LY9'protein_coding'1024AEGain5.9710EU AB CE E10b_E11a20.00
2372374.96CNN2'protein_coding'27AEGain6.471ES E4a_E6a0
2382384.96ZNF276'protein_coding'111AELoss-6.3713EU AB IR I933.33
2392394.96AIF1'protein_coding'59AEGain77.228EU AB E3a_E4b66.67
2402404.96COL6A3'protein_coding'850DEGain31.030N/ACOL6A3N/A
2412414.95TNFSF13'protein_coding'823AELoss-2.867EU ES ER9b50.00
2422424.91ZFYVE19'protein_coding'315AEGain6.765EU AB E10_Aa50.00
2432434.91PCOLCE'protein_coding'19DEGain15.192EU PCOLCE0.00
2442444.91ALPK1'protein_coding'221AEGain6.843EU E1a_E2a50.00
2452454.91IGFBP5'protein_coding'14DEGain29.980N/AIGFBP5N/A
2462464.90ATP2A3'protein_coding'829AEGain7.080N/AENST00000397035N/A
2472474.90CALD1'protein_coding'417DEGain29.800N/ACALD1N/A
2482484.89C3orf63'protein_coding'226AELoss-6.611ES E11a_E14a0
2492494.89HLA-DPB1'protein_coding'818AELoss-4.455EU ES AB ENST000003952720.00
2502504.89RBBP5'protein_coding'419AEGain7.481EU E3a_E4a0
2512514.89COL6A2'protein_coding'533DEGain29.584EU COL6A233.33


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.57BRE'protein_coding'721AELoss-905.4911EU ES AB CE I1_AR180.00
2212.64AC022210.8'pseudogene'13AEGain168.672ES AB E1_Da0
3311.89HLA-DRB1'protein_coding'16AELoss-179.771EU E2a_E3a0
449.53RPL15'protein_coding'26AELoss-28.144EU AB ER2a50.00
568.35HS2ST1'protein_coding'415AEGain15.153EU ER10a100.00
688.12HLA-DQB1'protein_coding'817AELoss-26.901ES E6a_E9a0
798.05AC004448.3'pseudogene'12AELoss-2.092EU AB E1_Da0
8147.74TCTN1'protein_coding'827AELoss-4.6620EU ES AB CE E6_Da64.29
9167.58TMEM77'protein_coding'211AEGain83.313EU E1a_E2a100.00
10187.48FOSB'protein_coding'14DELoss-177.992AB FOSB0
11197.45APOE'protein_coding'14DEGain174.362EU APOE0.00
12207.44TNFRSF6B'protein_coding'1049AEGain17.6719EU AB E36_Da23.08
13227.32NCF1'protein_coding'111AELoss-11.753EU ER1a0.00
14237.28CCDC152'protein_coding'19AELoss-2.7110EU ER1a77.78
15267.15YPEL3'protein_coding'39AEGain43.132EU ER1a100.00
16277.10GTF2I'protein_coding'335AELoss-17.901ES E30a_E32a0
17287.07IL16'protein_coding'934AELoss-14.792EU AB E21a_E22a0
18306.95SPTBN1'protein_coding'338AEGain14.234EU ES ER2a66.67
19316.95SSH3BP'protein_coding'1319AEGain10.8514EU ES AB ER4a75.00
20326.91HLA-A'protein_coding'723AELoss-12.2614EU ES AB IR E7a_E9a33.33
21356.80HNRNPA1'protein_coding'213AELoss-109.913EU E3a_E4a50.00
22366.79SPARC'protein_coding'110DEGain110.373EU SPARC50.00
23376.77ITGB7'protein_coding'216AEGain14.346EU IR I4_AR150.00
24386.75EIF4E'protein_coding'29AELoss-32.434EU E5a_E6a100.00
25426.71AC034193.5'protein_coding'12AELoss-11.362EU ER2a100.00
26436.70IGHE'IG_C_gene'211DEGain104.283EU CE IGHE0.00
27446.65ASNS'protein_coding'316AELoss-11.422EU E1a_E2b100.00
28456.65AC004833.1'pseudogene'13AELoss-18.052AB E2_Da0
29466.65C1S'protein_coding'634DEGain39.899EU AB C1S40.00
30476.62HSPA8'protein_coding'211AELoss-58.022EU ES E2a_E4a0.00
31496.58FCER1G'protein_coding'27AELoss-2.352EU AB E6_Aa0
32506.57NUTF2'protein_coding'15AEGain14.081CE I4_AR20
33516.57GPNMB'protein_coding'314DEGain95.187EU GPNMB66.67
34526.57SAMSN1'protein_coding'516AELoss-16.081ES E7a_E9a0
35546.56IGHG4'IG_C_gene'29AELoss-2.684EU AB E1_Da0.00
36556.54TBC1D4'protein_coding'221AELoss-8.8020EU CE ER9a100.00
37566.51IFITM3'protein_coding'27DEGain36.914EU AB IFITM3100.00
38586.45BCL2'protein_coding'24DEGain35.7120EU AB CE BCL2100.00
39596.42SLC37A1'protein_coding'323AELoss-14.3223AB IR E6_Da0
40616.40IL32'protein_coding'613DEGain34.875EU ES IL3275.00
41626.36FN1'protein_coding'1050DEGain82.2710EU AB FN10.00
42636.35ADAMDEC1'protein_coding'215DEGain33.848EU ADAMDEC157.14
43646.35HNRPA2B1'protein_coding'519AELoss-53.291ES E8a_E10a0
44666.33NFIC'protein_coding'514AELoss-5.348EU AB CE E7_Aa60.00
45686.33BCL2A1'protein_coding'23AEGain11.883EU E2a_E3a100.00
46706.28ENPP2'protein_coding'226DEGain77.9010EU ENPP20.00
47716.27P2RY5'protein_coding'28AELoss-4.121EU ER4a0
48726.27CSDA'protein_coding'212AEGain14.711EU ER1a0
49736.25BPNT1'protein_coding'315AEGain11.274EU ES AB E9c_E9d0.00
50746.25CHCHD10'protein_coding'27AEGain9.812EU ER1a100.00
51766.20SGK1'protein_coding'418AEGain15.304EU ES E1a_E2a0.00
52776.18C3'protein_coding'141DEGain72.4814EU C330.77
53796.15AHSA2'protein_coding'723AELoss-9.719EU AB IR E11_Db0
54816.13PGAM1'protein_coding'14AELoss-44.584EU ER3a66.67
55826.12AC010422.7'protein_coding'19AEGain13.447EU AB IR E6_Aa0
56836.10STAG3'protein_coding'440AELoss-6.845EU AB E21_Aa0.00
57846.10CD52'protein_coding'12AELoss-10.992EU AB E2_Aa0
58866.07PAOX'protein_coding'920AELoss-7.217EU ES AB E7_Aa33.33
59876.07TMBIM4'protein_coding'312AELoss-12.611AB E8_Da0
60886.06IGFBP7'protein_coding'15DEGain66.803EU IGFBP70.00
61896.05C1QA'protein_coding'311DEGain66.298EU ES AB C1QA20.00
62916.02NCF1C'protein_coding'213AELoss-7.222EU ER1b100.00
63936.01TIMP1'protein_coding'411DEGain64.353EU TIMP1100.00
64945.99IL18'protein_coding'16DEGain63.442EU IL180.00
65975.97TPT1'protein_coding'412AELoss-13.831ES E2a_E4a0
66985.97HLA-DQB2'protein_coding'49AEGain5.673EU E4a_E5a50.00
67995.96TMEM176B'protein_coding'29DEGain62.382EU TMEM176B0.00
681005.96FNBP1'protein_coding'525AELoss-10.2210EU ES AB CE E12a_E15b100.00
691015.94HN1'protein_coding'512AELoss-15.054EU AB ER5a0.00
701045.90CBWD2'protein_coding'319AELoss-11.342EU ER15a0.00
711055.88AC004053.1'protein_coding'432AELoss-11.003EU AB ER2b0.00
721075.86CLIP3'protein_coding'114AELoss-3.583EU CE I7_AR2100.00
731095.84TOMM40'protein_coding'213AEGain8.303EU E1a_E2a100.00
741105.83RPSA'protein_coding'17AELoss-11.833EU E3a_E4a0.00
751115.83SH3YL1'protein_coding'727AELoss-6.542EU ER13a0.00
761125.83C1QC'protein_coding'37DEGain56.811EU C1QC0
771135.78WTAP'protein_coding'311AEGain12.053EU AB CE I1_AR20
781145.76C14orf104'protein_coding'56AELoss-6.393EU AB E1_Db100.00
791155.75ZCCHC10'protein_coding'25AELoss-12.992EU ES E3a_E5a0.00
801165.75CD40'protein_coding'414AELoss-12.717EU ES AB ENST000003722760.00
811175.74RPS24'protein_coding'39AEGain13.973EU ES ENST0000036083050.00
821185.74RGS2'protein_coding'15DELoss-53.531EU RGS20
831195.73GZMK'protein_coding'15DEGain53.101EU GZMK0
841205.71ATAD5'protein_coding'123AEGain6.161AB E22_Aa0
851225.70PICALM'protein_coding'523AEGain9.098EU ES ER18a85.71
861235.69MS4A6A'protein_coding'17DEGain51.684EU AB IR MS4A6A0
871245.68CCL18'protein_coding'13DEGain51.421EU CCL180
881255.68SC-9C5.12'protein_coding'35AEGain3.8712EU ES IR I1_SR3100.00
891275.65MAML1'protein_coding'28AELoss-11.773EU AB CE E2_Da0
901305.61NR4A1'protein_coding'615DELoss-48.926EU ES AB NR4A10.00
911315.61UCHL3'protein_coding'210AEGain10.582AB CE I9_AR10
921325.61MRPL15'protein_coding'15AELoss-12.602EU ES E3a_E5a0.00
931335.60RBM5'protein_coding'227AELoss-13.155EU ES AB E16a_E18a0.00
941355.60ZNF410'protein_coding'314AELoss-25.942EU ES E9a_E11a0.00
951365.59AC140077.17'protein_coding'110DEGain48.031EU AC140077.170
961385.54PLEKHK1'protein_coding'417AELoss-8.2710EU ER4a100.00
971425.50PDCD7'protein_coding'29AEGain10.235AB IR I4_AR10
981445.49GUK1'protein_coding'1536AELoss-10.132EU I4_SR30
991455.46SH3GLB2'protein_coding'419AEGain7.601EU ER1b0
1001465.45IGHV4-31'IG_C_gene'27AEGain2.322EU E4a_E5a0.00
1011475.45SLC9A1'protein_coding'420AEGain12.251EU E11a_E12a0
1021525.43PHTF2'protein_coding'321AELoss-20.373ES AB CE E2_Aa0
1031535.42GMDS'protein_coding'213AELoss-7.055EU CE I9_AR8100.00
1041545.42TNFRSF13C'protein_coding'13AEGain7.693EU IR E1a_E2a0
1051555.42CHKB'protein_coding'111AELoss-11.365EU AB ER10a0.00
1061565.42EXOSC8'protein_coding'315AEGain10.312AB E4_Da0
1071575.42AUP1'protein_coding'217AELoss-7.536EU ES AB E3a_E6a100.00
1081585.41XYLT1'protein_coding'112AEGain8.2110AB IR I8_SR20
1091595.41IGHA2'IG_C_gene'25AELoss-402.268EU AB CE E3a_E4a25.00
1101605.40AFF3'protein_coding'429AELoss-7.155ES AB CE E1a_E5a100.00
1111615.39C9orf86'protein_coding'625AEGain8.762AB E1_Ab0
1121625.37PTPRC'protein_coding'1143AEGain21.583EU ES E4a_E9a50.00
1131655.36KIF15'protein_coding'236AEGain7.674EU ES AB E24_Aa50.00
1141685.32PTK2B'protein_coding'438AELoss-7.706EU CE E28a_E29a100.00
1151705.32PSPH'protein_coding'312AEGain44.962ES AB ENST000003662330
1161735.31CUX1'protein_coding'535AELoss-9.9921EU ES AB CE ENST0000033899066.67
1171755.30C17orf44'protein_coding'13AELoss-3.522EU AB E2_Da0
1181775.29TMEM176A'protein_coding'17DEGain39.082AB CE TMEM176A0
1191795.28ULK3'protein_coding'115AELoss-6.741EU E13a_E14a0
1201805.28C16orf7'protein_coding'322AELoss-8.5210EU ES AB CE E6_Aa0.00
1211815.28RASSF4'protein_coding'515DEGain38.732EU ES RASSF40.00
1221825.27WDR66'protein_coding'223AELoss-6.1017EU E16a_E17a62.50
1231835.26CRELD2'protein_coding'415AEGain8.297EU AB E1_Ab66.67
1241845.26WSB1'protein_coding'29AELoss-26.002ES E1a_E3a0.00
1251865.24IGHG3'IG_C_gene'610DELoss-37.765EU AB CE IGHG30.00
1261885.23FAM3C'protein_coding'110AELoss-16.163EU ES E8a_E9a100.00
1271905.21GTF2H2B'protein_coding'117AELoss-10.143EU ER5a0.00
1281915.20TIMP2'protein_coding'15DEGain36.672EU TIMP20.00
1291925.18COL6A1'protein_coding'135DEGain36.1512EU COL6A10.00
1301945.16AFMID'protein_coding'516AEGain8.5312EU ES AB IR CE E6_Aa33.33
1311955.16CD46'protein_coding'1515AELoss-4.632ES CE I8_AR20
1321965.15ACTR6'protein_coding'111AELoss-8.761EU E1a_E2a0
1331975.15APBB2'protein_coding'221AEGain8.085EU ES ER9a25.00
1341995.12RHBDD1'protein_coding'311AELoss-9.713EU AB CE E1_Da0
1352015.12AL645929.4'protein_coding'17AELoss-10.6311EU ES AB E2a_E3a85.71
1362025.12MOBKL3'protein_coding'616AELoss-10.185EU ES E2a_E5a50.00
1372035.11PAPOLG'protein_coding'222AELoss-7.451ES E14a_E16a0
1382045.11MAF1'protein_coding'18AELoss-8.153AB IR I5_AR10
1392085.09SIRPA'protein_coding'413DEGain16.785EU SIRPA50.00
1402095.08NCALD'protein_coding'511AEGain6.702EU CE ER4a0
1412105.07STK17A'protein_coding'17AELoss-6.021ES E3a_E5a0
1422115.07POLR2J2'protein_coding'312AEGain135.674EU ER7a0.00
1432125.06HNRNPH2'protein_coding'512AELoss-5.586EU ES IR Ix75.00
1442145.06ORC4L'protein_coding'317AELoss-9.033EU E2a_E3a0.00
1452155.05AB019441.1'IG_V_gene'12DELoss-16.482EU AB019441.1100.00
1462165.05U66059.1'IG_V_gene'12DEGain33.201EU U66059.10
1472185.04MOSC2'protein_coding'311AELoss-8.475EU AB E6_Da0.00
1482195.03IGFBP3'protein_coding'310DEGain32.752EU AB IGFBP30
1492225.01CTSD'protein_coding'212DEGain16.133EU AB CTSD100.00
1502235.01HMGB1'protein_coding'718AEGain5.984EU ES E4a_E4c0.00
1512254.99SASH3'protein_coding'18AELoss-6.031ES E2a_E4a0
1522274.99MS4A7'protein_coding'27AELoss-6.508EU AB CE E3a_E4a66.67
1532304.98PIK3AP1'protein_coding'320AELoss-9.402ES E16a_E19a0.00
1542334.97TRIM11'protein_coding'28AEGain9.181EU ER1a0
1552344.97AB019440.1'IG_V_gene'12DELoss-31.281EU AB019440.10
1562364.97LY9'protein_coding'1024AEGain5.9710EU AB CE E10b_E11a20.00
1572374.96CNN2'protein_coding'27AEGain6.471ES E4a_E6a0
1582384.96ZNF276'protein_coding'111AELoss-6.3713EU AB IR I933.33
1592394.96AIF1'protein_coding'59AEGain77.228EU AB E3a_E4b66.67
1602414.95TNFSF13'protein_coding'823AELoss-2.867EU ES ER9b50.00
1612424.91ZFYVE19'protein_coding'315AEGain6.765EU AB E10_Aa50.00
1622434.91PCOLCE'protein_coding'19DEGain15.192EU PCOLCE0.00
1632444.91ALPK1'protein_coding'221AEGain6.843EU E1a_E2a50.00
1642484.89C3orf63'protein_coding'226AELoss-6.611ES E11a_E14a0
1652494.89HLA-DPB1'protein_coding'818AELoss-4.455EU ES AB ENST000003952720.00
1662504.89RBBP5'protein_coding'419AEGain7.481EU E3a_E4a0
1672514.89COL6A2'protein_coding'533DEGain29.584EU COL6A233.33
1682534.88ACTA2'protein_coding'19DEGain29.523EU ACTA250.00
1692564.87SLCO2B1'protein_coding'214DEGain29.262EU SLCO2B10.00
1702584.85RBBP7'protein_coding'619AEGain6.814EU ENST0000038008433.33
1712604.85RECK'protein_coding'222AELoss-4.605EU E8a_E9a50.00
1722624.84ANXA5'protein_coding'215AELoss-6.112EU ES E7a_E9a0.00
1732644.82NLRC5'protein_coding'351AELoss-5.565EU ES E32a_E33a25.00
1742654.82RAPGEF1'protein_coding'837AELoss-17.606EU IR CE I13_AR20
1752664.82RERE'protein_coding'427AEGain7.055EU ES E9a_E10a25.00
1762684.82TYROBP'protein_coding'15DEGain28.161EU TYROBP0
1772704.80PRPSAP2'protein_coding'215AELoss-32.904ES E11a_E13a0.00
1782714.80LSM14B'protein_coding'823AEGain5.932CE I4_AR10
1792724.79HLA-F'protein_coding'616AELoss-3.393EU IR I50
1802744.78ENTPD1'protein_coding'414AELoss-8.291CE I1_AR10
1812774.78LILRB1'protein_coding'726AEGain6.561AB E2_Ad0
1822784.78HERC2P3'protein_coding'127AELoss-6.506EU E22a_E23a40.00
1832804.77NCK1'protein_coding'14AEGain17.131CE I2_AR20
1842824.77ZNF451'protein_coding'622AELoss-8.486EU ES CE ENST0000037071033.33
1852844.76MTMR1'protein_coding'321AELoss-6.032EU AB E2a_E3a0
1862854.75KBTBD4'protein_coding'412AELoss-7.471AB E4_Da0
1872864.75ZNF646'protein_coding'413AEGain7.284EU AB E1a_E2b0.00
1882874.75SMARCA5'protein_coding'124AELoss-18.851ES E13a_E15a0
1892884.75RAP1B'protein_coding'210AELoss-21.763EU E6a_E7a50.00
1902894.74DOCK9'protein_coding'1072AEGain5.394EU E3a_E4a33.33
1912904.74WBP5'protein_coding'23AELoss-7.561ES ENST000003726560
1922924.74ABLIM1'protein_coding'1540AEGain5.802EU ER10a0.00
1932934.74UBE2K'protein_coding'29AELoss-8.292EU ES E5a_E7a0.00
1942944.73CUL3'protein_coding'420AELoss-15.611AB E4_Da0
1952954.73TAGLN'protein_coding'310DEGain26.584EU AB TAGLN50.00
1962964.73MAT2A'protein_coding'315AELoss-5.3512AB IR E6_Da0
1972974.73RP4-604K5.1'protein_coding'512AELoss-6.042EU E3a_E4a0.00
1982984.72RNFT1'protein_coding'312AELoss-8.473EU AB E8a_E9a0.00
1992994.72LRCH4'protein_coding'118AELoss-6.182EU ES E17a_E18a0.00
2003014.72USP34'protein_coding'382AEGain13.6812EU AB IR E77_Da0
2013044.71ADCY3'protein_coding'224AELoss-5.306EU AB E20_Aa0.00
2023064.71FOS'protein_coding'14DELoss-26.095EU AB IR FOS0
2033094.69SERPINF1'protein_coding'18DEGain25.873EU AB SERPINF10.00
2043104.69AGPAT5'protein_coding'18AELoss-5.691ES E4a_E7a0
2053114.68SNX5'protein_coding'418AELoss-14.622EU E1a_E2b100.00
2063124.68TCF4'protein_coding'324AEGain4.284EU AB IR E8a_E9a100.00
2073134.68STK38'protein_coding'217AELoss-7.031ES E9a_E11a0
2083144.68C2orf56'protein_coding'213AELoss-5.814EU ES AB IR E5b_E7a0.00
2093154.68MAX'protein_coding'69AELoss-5.881EU E3a_E4a0
2103164.67C12orf35'protein_coding'38AELoss-5.882EU ES E4a_E6a0.00
2113174.67RBKS'protein_coding'18AELoss-104.504EU AB CE I1_AR10
2123194.66KIAA2013'protein_coding'48AELoss-6.531CE I4_AR140
2133204.66IGLV2-11'IG_V_gene'12DELoss-25.331EU IGLV2-110
2143224.66RNF19B'protein_coding'517AEGain4.251EU ER1d0
2153234.66PIGN'protein_coding'231AELoss-7.042EU E2a_E3a0.00
2163254.65STRADA'protein_coding'520AEGain8.912EU ES ENST00000336174100.00
2173264.65ACYP1'protein_coding'24AEGain6.787EU AB IR I3_AR250.00
2183274.65UFC1'protein_coding'16AELoss-7.163EU ES E2a_E4a0.00
2193304.62GIMAP4'protein_coding'13DEGain24.631EU GIMAP40
2203314.62REC8'protein_coding'120AEGain7.192EU AB E13_Aa0
2213324.62MTIF3'protein_coding'311AELoss-3.753EU ES E2a_E4b100.00
2223334.62DUSP1'protein_coding'14DELoss-24.552IR DUSP10
2233354.61PAQR3'protein_coding'418AEGain6.956EU AB CE ER1b0
2243374.61ANUBL1'protein_coding'719AEGain4.715AB CE E14_Aa0
2253384.61ILKAP'protein_coding'112AELoss-6.181ES E7a_E9a0
2263394.60BX664615.10'protein_coding'36AEGain7.181AB E3_Aa0
2273414.60CHPT1'protein_coding'19AELoss-4.852EU AB E3_Da0
2283424.59NCOA4'protein_coding'516AEGain17.622ES E2a_E4a0.00
2293434.59ZNF783'protein_coding'114AELoss-2.607EU AB CE I5_AR20.00
2303444.59ZNF76'protein_coding'316AEGain7.943IR I13_SR10
2313504.58DENND1B'protein_coding'419AEGain5.924EU AB E4_Aa0.00
2323514.57RAB2'protein_coding'313AELoss-7.351ES E7a_E9a0
2333534.57IQGAP1'protein_coding'138AELoss-6.831AB E2_Da0
2343554.57BAG1'protein_coding'618AEGain7.803EU AB CE ER1b0
2353564.57IL1R1'protein_coding'621DEGain12.588EU AB IL1R183.33
2363584.56CCDC90B'protein_coding'19AELoss-6.961EU E1a_E2a0
2373594.56DNAJC5B'protein_coding'16DEGain23.613EU DNAJC5B0.00
2383604.55CYFIP1'protein_coding'131DEGain23.488EU CYFIP10.00
2393614.55GCSH'protein_coding'15AELoss-5.392EU E2a_E3a100.00
2403624.55PPP1R10'protein_coding'120AELoss-12.561ES E10a_E12a0
2413634.55DGKZ'protein_coding'435AEGain6.3110EU AB E2_Aa25.00
2423644.54DZIP3'protein_coding'235AEGain6.924EU ES CE I1_AR30.00
2433674.52SQRDL'protein_coding'110DEGain23.013EU ES SQRDL50.00
2443704.52PLSCR1'protein_coding'19AELoss-4.691ES E1a_E3a0
2453724.52CPEB2'protein_coding'514AELoss-5.001CE I3_AR30
2463734.52RPL3'protein_coding'417AELoss-13.5335EU ES AB IR CE I2_AR20.00
2473754.51ACSL5'protein_coding'523AEGain7.631ES E21a_E23a0
2483764.50SH3TC1'protein_coding'322AELoss-15.304EU CE I13_AR150.00
2493784.49SYNGR3'protein_coding'26AEGain5.931EU E1a_E2a0
2503794.49ARRDC2'protein_coding'29AELoss-6.711ES E4a_E6a0
2513834.48TRIB2'protein_coding'37AELoss-4.412EU E2a_E3a100.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1212.64AC022210.8'pseudogene'13AEGain168.672ES AB E1_Da0
258.59SEPP1'protein_coding'14DEGain385.970N/ASEPP1N/A
368.35HS2ST1'protein_coding'415AEGain15.153EU ER10a100.00
478.29CXCL9'protein_coding'14DEGain313.910N/ACXCL9N/A
5108.01APOC1'protein_coding'15DEGain258.010N/AAPOC1N/A
6117.95CCL19'protein_coding'26DEGain248.000N/ACCL19N/A
7127.81CCL21'protein_coding'26DEGain223.740N/ACCL21N/A
8137.79LUM'protein_coding'13DEGain220.970N/ALUMN/A
9157.67BGN'protein_coding'211DEGain203.860N/ABGNN/A
10167.58TMEM77'protein_coding'211AEGain83.313EU E1a_E2a100.00
11197.45APOE'protein_coding'14DEGain174.362EU APOE0.00
12207.44TNFRSF6B'protein_coding'1049AEGain17.6719EU AB E36_Da23.08
13217.44SLC40A1'protein_coding'18DEGain173.410N/ASLC40A1N/A
14257.18COL3A1'protein_coding'254DEGain144.950N/ACOL3A1N/A
15267.15YPEL3'protein_coding'39AEGain43.132EU ER1a100.00
16296.97TIMP3'protein_coding'28DEGain125.490N/ATIMP3N/A
17306.95SPTBN1'protein_coding'338AEGain14.234EU ES ER2a66.67
18316.95SSH3BP'protein_coding'1319AEGain10.8514EU ES AB ER4a75.00
19336.88PLA2G2D'protein_coding'14DEGain117.860N/APLA2G2DN/A
20346.85COL1A1'protein_coding'151DEGain115.500N/ACOL1A1N/A
21366.79SPARC'protein_coding'110DEGain110.373EU SPARC50.00
22376.77ITGB7'protein_coding'216AEGain14.346EU IR I4_AR150.00
23396.74A2M'protein_coding'240DEGain106.720N/AA2MN/A
24406.73COL1A2'protein_coding'254DEGain106.010N/ACOL1A2N/A
25416.72DCN'protein_coding'610DEGain105.070N/ADCNN/A
26436.70IGHE'IG_C_gene'211DEGain104.283EU CE IGHE0.00
27466.65C1S'protein_coding'634DEGain39.899EU AB C1S40.00
28486.61CCL2'protein_coding'13DEGain97.750N/ACCL2N/A
29506.57NUTF2'protein_coding'15AEGain14.081CE I4_AR20
30516.57GPNMB'protein_coding'314DEGain95.187EU GPNMB66.67
31536.57POSTN'protein_coding'524DEGain94.730N/APOSTNN/A
32566.51IFITM3'protein_coding'27DEGain36.914EU AB IFITM3100.00
33586.45BCL2'protein_coding'24DEGain35.7120EU AB CE BCL2100.00
34616.40IL32'protein_coding'613DEGain34.875EU ES IL3275.00
35626.36FN1'protein_coding'1050DEGain82.2710EU AB FN10.00
36636.35ADAMDEC1'protein_coding'215DEGain33.848EU ADAMDEC157.14
37656.34LYZ'protein_coding'14DEGain80.850N/ALYZN/A
38676.33SPARCL1'protein_coding'111DEGain80.600N/ASPARCL1N/A
39686.33BCL2A1'protein_coding'23AEGain11.883EU E2a_E3a100.00
40696.33SERPING1'protein_coding'617DEGain80.180N/ASERPING1N/A
41706.28ENPP2'protein_coding'226DEGain77.9010EU ENPP20.00
42726.27CSDA'protein_coding'212AEGain14.711EU ER1a0
43736.25BPNT1'protein_coding'315AEGain11.274EU ES AB E9c_E9d0.00
44746.25CHCHD10'protein_coding'27AEGain9.812EU ER1a100.00
45756.23FSTL1'protein_coding'111DEGain75.110N/AFSTL1N/A
46766.20SGK1'protein_coding'418AEGain15.304EU ES E1a_E2a0.00
47776.18C3'protein_coding'141DEGain72.4814EU C330.77
48786.17C1QB'protein_coding'13DEGain71.820N/AC1QBN/A
49806.14RARRES1'protein_coding'16DEGain70.640N/ARARRES1N/A
50826.12AC010422.7'protein_coding'19AEGain13.447EU AB IR E6_Aa0
51886.06IGFBP7'protein_coding'15DEGain66.803EU IGFBP70.00
52896.05C1QA'protein_coding'311DEGain66.298EU ES AB C1QA20.00
53936.01TIMP1'protein_coding'411DEGain64.353EU TIMP1100.00
54945.99IL18'protein_coding'16DEGain63.442EU IL180.00
55955.98THY1'protein_coding'14DEGain63.290N/ATHY1N/A
56965.98MMP9'protein_coding'113DEGain63.200N/AMMP9N/A
57985.97HLA-DQB2'protein_coding'49AEGain5.673EU E4a_E5a50.00
58995.96TMEM176B'protein_coding'29DEGain62.382EU TMEM176B0.00
591035.90CTSL1'protein_coding'414DEGain59.780N/ACTSL1N/A
601065.87GZMA'protein_coding'15DEGain58.570N/AGZMAN/A
611085.86MNDA'protein_coding'17DEGain57.890N/AMNDAN/A
621095.84TOMM40'protein_coding'213AEGain8.303EU E1a_E2a100.00
631125.83C1QC'protein_coding'37DEGain56.811EU C1QC0
641135.78WTAP'protein_coding'311AEGain12.053EU AB CE I1_AR20
651175.74RPS24'protein_coding'39AEGain13.973EU ES ENST0000036083050.00
661195.73GZMK'protein_coding'15DEGain53.101EU GZMK0
671205.71ATAD5'protein_coding'123AEGain6.161AB E22_Aa0
681215.70EFEMP1'protein_coding'416DEGain52.050N/AEFEMP1N/A
691225.70PICALM'protein_coding'523AEGain9.098EU ES ER18a85.71
701235.69MS4A6A'protein_coding'17DEGain51.684EU AB IR MS4A6A0
711245.68CCL18'protein_coding'13DEGain51.421EU CCL180
721255.68SC-9C5.12'protein_coding'35AEGain3.8712EU ES IR I1_SR3100.00
731265.65FABP4'protein_coding'14DEGain50.340N/AFABP4N/A
741285.64CSF1R'protein_coding'224DEGain49.770N/ACSF1RN/A
751295.62AQP1'protein_coding'410DEGain49.230N/AAQP1N/A
761315.61UCHL3'protein_coding'210AEGain10.582AB CE I9_AR10
771345.60OR2I1P'unprocessed_pseudogene'11DEGain48.490N/AOR2I1PN/A
781365.59AC140077.17'protein_coding'110DEGain48.031EU AC140077.170
791375.58COL4A1'protein_coding'467DEGain47.730N/ACOL4A1N/A
801395.53C7'protein_coding'118DEGain46.290N/AC7N/A
811405.52COL4A2'protein_coding'461DEGain45.810N/ACOL4A2N/A
821415.50TIMD4'protein_coding'313DEGain45.290N/ATIMD4N/A
831425.50PDCD7'protein_coding'29AEGain10.235AB IR I4_AR10
841435.50MMP2'protein_coding'113DEGain45.120N/AMMP2N/A
851455.46SH3GLB2'protein_coding'419AEGain7.601EU ER1b0
861465.45IGHV4-31'IG_C_gene'27AEGain2.322EU E4a_E5a0.00
871475.45SLC9A1'protein_coding'420AEGain12.251EU E11a_E12a0
881515.43FOXP3'protein_coding'315DEGain43.010N/AFOXP3N/A
891545.42TNFRSF13C'protein_coding'13AEGain7.693EU IR E1a_E2a0
901565.42EXOSC8'protein_coding'315AEGain10.312AB E4_Da0
911585.41XYLT1'protein_coding'112AEGain8.2110AB IR I8_SR20
921615.39C9orf86'protein_coding'625AEGain8.762AB E1_Ab0
931625.37PTPRC'protein_coding'1143AEGain21.583EU ES E4a_E9a50.00
941635.36IL33'protein_coding'17DEGain41.190N/AIL33N/A
951645.36MGP'protein_coding'14DEGain41.120N/AMGPN/A
961655.36KIF15'protein_coding'236AEGain7.674EU ES AB E24_Aa50.00
971705.32PSPH'protein_coding'312AEGain44.962ES AB ENST000003662330
981715.31PLA2G7'protein_coding'112DEGain39.750N/APLA2G7N/A
991725.31MFAP4'protein_coding'28DEGain39.650N/AMFAP4N/A
1001745.30CCDC80'protein_coding'18DEGain39.480N/ACCDC80N/A
1011765.30CD14'protein_coding'24DEGain39.310N/ACD14N/A
1021775.29TMEM176A'protein_coding'17DEGain39.082AB CE TMEM176A0
1031785.28TCN2'protein_coding'314DEGain38.890N/ATCN2N/A
1041815.28RASSF4'protein_coding'515DEGain38.732EU ES RASSF40.00
1051835.26CRELD2'protein_coding'415AEGain8.297EU AB E1_Ab66.67
1061855.24NNMT'protein_coding'13DEGain37.820N/ANNMTN/A
1071875.24PLVAP'protein_coding'16DEGain37.720N/APLVAPN/A
1081915.20TIMP2'protein_coding'15DEGain36.672EU TIMP20.00
1091925.18COL6A1'protein_coding'135DEGain36.1512EU COL6A10.00
1101945.16AFMID'protein_coding'516AEGain8.5312EU ES AB IR CE E6_Aa33.33
1111975.15APBB2'protein_coding'221AEGain8.085EU ES ER9a25.00
1121985.13CST3'protein_coding'38DEGain34.950N/ACST3N/A
1132005.12CYP27A1'protein_coding'19DEGain34.880N/ACYP27A1N/A
1142075.09SFRP4'protein_coding'16DEGain34.130N/ASFRP4N/A
1152085.09SIRPA'protein_coding'413DEGain16.785EU SIRPA50.00
1162095.08NCALD'protein_coding'511AEGain6.702EU CE ER4a0
1172115.07POLR2J2'protein_coding'312AEGain135.674EU ER7a0.00
1182165.05U66059.1'IG_V_gene'12DEGain33.201EU U66059.10
1192195.03IGFBP3'protein_coding'310DEGain32.752EU AB IGFBP30
1202215.02AC104692.1'pseudogene'12DEGain32.380N/AAC104692.1N/A
1212225.01CTSD'protein_coding'212DEGain16.133EU AB CTSD100.00
1222235.01HMGB1'protein_coding'718AEGain5.984EU ES E4a_E4c0.00
1232245.00DAB2'protein_coding'215DEGain32.060N/ADAB2N/A
1242264.99TNFRSF1A'protein_coding'110DEGain31.820N/ATNFRSF1AN/A
1252284.99CTHRC1'protein_coding'27DEGain31.680N/ACTHRC1N/A
1262324.97CFH'protein_coding'425DEGain31.420N/ACFHN/A
1272334.97TRIM11'protein_coding'28AEGain9.181EU ER1a0
1282354.97PLAU'protein_coding'313DEGain31.280N/APLAUN/A
1292364.97LY9'protein_coding'1024AEGain5.9710EU AB CE E10b_E11a20.00
1302374.96CNN2'protein_coding'27AEGain6.471ES E4a_E6a0
1312394.96AIF1'protein_coding'59AEGain77.228EU AB E3a_E4b66.67
1322404.96COL6A3'protein_coding'850DEGain31.030N/ACOL6A3N/A
1332424.91ZFYVE19'protein_coding'315AEGain6.765EU AB E10_Aa50.00
1342434.91PCOLCE'protein_coding'19DEGain15.192EU PCOLCE0.00
1352444.91ALPK1'protein_coding'221AEGain6.843EU E1a_E2a50.00
1362454.91IGFBP5'protein_coding'14DEGain29.980N/AIGFBP5N/A
1372464.90ATP2A3'protein_coding'829AEGain7.080N/AENST00000397035N/A
1382474.90CALD1'protein_coding'417DEGain29.800N/ACALD1N/A
1392504.89RBBP5'protein_coding'419AEGain7.481EU E3a_E4a0
1402514.89COL6A2'protein_coding'533DEGain29.584EU COL6A233.33
1412534.88ACTA2'protein_coding'19DEGain29.523EU ACTA250.00
1422554.88SDC3'protein_coding'39DEGain29.440N/ASDC3N/A
1432564.87SLCO2B1'protein_coding'214DEGain29.262EU SLCO2B10.00
1442574.87PTGDS'protein_coding'310DEGain29.170N/APTGDSN/A
1452584.85RBBP7'protein_coding'619AEGain6.814EU ENST0000038008433.33
1462594.85IFI27'protein_coding'15DEGain28.840N/AIFI27N/A
1472614.85SLAMF8'protein_coding'25DEGain28.760N/ASLAMF8N/A
1482634.83LILRB4'protein_coding'522DEGain28.480N/ALILRB4N/A
1492664.82RERE'protein_coding'427AEGain7.055EU ES E9a_E10a25.00
1502674.82SOD3'protein_coding'12DEGain28.170N/ASOD3N/A
1512684.82TYROBP'protein_coding'15DEGain28.161EU TYROBP0
1522694.80CXCL12'protein_coding'610DEGain27.940N/ACXCL12N/A
1532714.80LSM14B'protein_coding'823AEGain5.932CE I4_AR10
1542754.78FMOD'protein_coding'13DEGain27.500N/AFMODN/A
1552764.78TSPAN7'protein_coding'210DEGain27.440N/ATSPAN7N/A
1562774.78LILRB1'protein_coding'726AEGain6.561AB E2_Ad0
1572794.77SERPINE1'protein_coding'19DEGain27.340N/ASERPINE1N/A
1582804.77NCK1'protein_coding'14AEGain17.131CE I2_AR20
1592814.77FPR3'protein_coding'12DEGain27.310N/AFPR3N/A
1602864.75ZNF646'protein_coding'413AEGain7.284EU AB E1a_E2b0.00
1612894.74DOCK9'protein_coding'1072AEGain5.394EU E3a_E4a33.33
1622924.74ABLIM1'protein_coding'1540AEGain5.802EU ER10a0.00
1632954.73TAGLN'protein_coding'310DEGain26.584EU AB TAGLN50.00
1643004.72TNC'protein_coding'528DEGain26.320N/ATNCN/A
1653014.72USP34'protein_coding'382AEGain13.6812EU AB IR E77_Da0
1663024.71ANTXR1'protein_coding'628DEGain26.240N/AANTXR1N/A
1673034.71DPT'protein_coding'14DEGain26.190N/ADPTN/A
1683054.71CYBRD1'protein_coding'36DEGain26.120N/ACYBRD1N/A
1693074.70C2'protein_coding'621DEGain26.050N/AC2N/A
1703084.69CLIC2'protein_coding'27DEGain25.900N/ACLIC2N/A
1713094.69SERPINF1'protein_coding'18DEGain25.873EU AB SERPINF10.00
1723124.68TCF4'protein_coding'324AEGain4.284EU AB IR E8a_E9a100.00
1733184.67HTRA1'protein_coding'19DEGain25.440N/AHTRA1N/A
1743224.66RNF19B'protein_coding'517AEGain4.251EU ER1d0
1753254.65STRADA'protein_coding'520AEGain8.912EU ES ENST00000336174100.00
1763264.65ACYP1'protein_coding'24AEGain6.787EU AB IR I3_AR250.00
1773304.62GIMAP4'protein_coding'13DEGain24.631EU GIMAP40
1783314.62REC8'protein_coding'120AEGain7.192EU AB E13_Aa0
1793344.61MXRA5'protein_coding'210DEGain24.430N/AMXRA5N/A
1803354.61PAQR3'protein_coding'418AEGain6.956EU AB CE ER1b0
1813364.61THBS1'protein_coding'325DEGain24.390N/ATHBS1N/A
1823374.61ANUBL1'protein_coding'719AEGain4.715AB CE E14_Aa0
1833394.60BX664615.10'protein_coding'36AEGain7.181AB E3_Aa0
1843404.60RGL1'protein_coding'323DEGain24.240N/ARGL1N/A
1853424.59NCOA4'protein_coding'516AEGain17.622ES E2a_E4a0.00
1863444.59ZNF76'protein_coding'316AEGain7.943IR I13_SR10
1873454.59DARC'protein_coding'36DEGain24.100N/ADARCN/A
1883464.59ISLR'protein_coding'24DEGain24.070N/AISLRN/A
1893484.58RNASE1'protein_coding'34DEGain23.970N/ARNASE1N/A
1903494.58COMP'protein_coding'119DEGain23.940N/ACOMPN/A
1913504.58DENND1B'protein_coding'419AEGain5.924EU AB E4_Aa0.00
1923524.57LOXL1'protein_coding'28DEGain23.800N/ALOXL1N/A
1933544.57CMKLR1'protein_coding'26DEGain23.770N/ACMKLR1N/A
1943554.57BAG1'protein_coding'618AEGain7.803EU AB CE ER1b0
1953564.57IL1R1'protein_coding'621DEGain12.588EU AB IL1R183.33
1963574.56ABI3BP'protein_coding'567DEGain23.650N/AABI3BPN/A
1973594.56DNAJC5B'protein_coding'16DEGain23.613EU DNAJC5B0.00
1983604.55CYFIP1'protein_coding'131DEGain23.488EU CYFIP10.00
1993634.55DGKZ'protein_coding'435AEGain6.3110EU AB E2_Aa25.00
2003644.54DZIP3'protein_coding'235AEGain6.924EU ES CE I1_AR30.00
2013654.54CSF1'protein_coding'514DEGain23.250N/ACSF1N/A
2023664.54DPYSL3'protein_coding'215DEGain23.210N/ADPYSL3N/A
2033674.52SQRDL'protein_coding'110DEGain23.013EU ES SQRDL50.00
2043684.52TNFSF13B'protein_coding'16DEGain22.990N/ATNFSF13BN/A
2053754.51ACSL5'protein_coding'523AEGain7.631ES E21a_E23a0
2063774.50PTRF'protein_coding'37DEGain22.620N/APTRFN/A
2073784.49SYNGR3'protein_coding'26AEGain5.931EU E1a_E2a0
2083804.49MYL9'protein_coding'24DEGain22.500N/AMYL9N/A
2093814.49CXCR6'protein_coding'12DEGain22.450N/ACXCR6N/A
2103824.49CEBPA'protein_coding'11DEGain22.430N/ACEBPAN/A
2113874.47SLC1A3'protein_coding'210DEGain22.150N/ASLC1A3N/A
2123884.47PMP22'protein_coding'39DEGain22.140N/APMP22N/A
2133914.46CMTM7'protein_coding'37AEGain6.051AB E1_Ab0
2143924.46C12orf24'protein_coding'17AEGain6.221AB E6_Aa0
2153934.45THBS2'protein_coding'224DEGain21.880N/ATHBS2N/A
2163944.45PRSS23'protein_coding'12DEGain21.820N/APRSS23N/A
2173984.44SELM'protein_coding'313DEGain11.723EU AB SELM100.00
2183994.44PLA2G2A'protein_coding'28DEGain21.660N/APLA2G2AN/A
2194024.43SH2D3C'protein_coding'516AEGain7.561CE I2_AR30
2204034.43AC025449.6'protein_coding'118AEGain6.552EU E13a_E14a0.00
2214044.43SCP2'protein_coding'521AEGain14.9019EU ES AB E11a_E13a82.35
2224054.42AKAP5'protein_coding'23AEGain6.731I1_SR70
2234104.41SH2D1A'protein_coding'410DEGain21.321AB SH2D1A0
2244114.41FXYD6'protein_coding'18DEGain21.310N/AFXYD6N/A
2254124.41C1orf165'protein_coding'26AEGain5.871EU E5a_E6a0
2264144.41SYNE2'protein_coding'7123AEGain5.6024EU AB IR CE I115_AR10.00
2274174.40RIPX'protein_coding'220AEGain7.092AB E16_Aa0
2284194.40LYPD6B'protein_coding'413DEGain21.092ES LYPD6B100.00
2294224.39U66061.1'IG_V_gene'12DEGain21.020N/AU66061.1N/A
2304234.39GIMAP5'protein_coding'13DEGain20.990N/AGIMAP5N/A
2314264.39ANKLE2'protein_coding'214AEGain6.501EU E1a_E2a0
2324274.39IGSF6'protein_coding'16DEGain20.980N/AIGSF6N/A
2334284.39AE000659.1'IG_V_gene'12DEGain20.940N/AAE000659.1N/A
2344304.38STX16'protein_coding'1038AEGain5.505EU AB E14a_E15a66.67
2354364.37GPX3'protein_coding'15DEGain20.610N/AGPX3N/A
2364374.37MCM5'protein_coding'322AEGain4.763EU AB CE E7_Aa0
2374384.36POLR2J'protein_coding'27AEGain19.001AB E2_Aa0
2384424.36SAMD9L'protein_coding'27DEGain20.571EU SAMD9L0
2394444.36CPE'protein_coding'213DEGain20.500N/ACPEN/A
2404464.35NPL'protein_coding'724DEGain20.447EU ES AB NPL0.00
2414474.35VWF'protein_coding'254DEGain20.400N/AVWFN/A
2424484.35CCHCR1'protein_coding'422AEGain7.072EU AB E16_Aa0
2434494.34FHOD1'protein_coding'122AEGain6.383EU AB E21_Da0.00
2444524.33PHLDA3'protein_coding'25DEGain20.100N/APHLDA3N/A
2454544.32GNG11'protein_coding'12DEGain19.970N/AGNG11N/A
2464574.31TMEM189'protein_coding'1125AEGain6.897EU ES E1a_E2a66.67
2474584.31AOAH'protein_coding'121DEGain19.830N/AAOAHN/A
2484594.31SELP'protein_coding'1026DEGain19.820N/ASELPN/A
2494604.31CMC1'protein_coding'25AEGain13.312EU CE I2_AR50
2504614.30TMEM119'protein_coding'25DEGain19.681AB TMEM1190
2514624.30U66059.1'IG_V_gene'12DEGain19.671EU U66059.10


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.57BRE'protein_coding'721AELoss-905.4911EU ES AB CE I1_AR180.00
2311.89HLA-DRB1'protein_coding'16AELoss-179.771EU E2a_E3a0
349.53RPL15'protein_coding'26AELoss-28.144EU AB ER2a50.00
488.12HLA-DQB1'protein_coding'817AELoss-26.901ES E6a_E9a0
598.05AC004448.3'pseudogene'12AELoss-2.092EU AB E1_Da0
6147.74TCTN1'protein_coding'827AELoss-4.6620EU ES AB CE E6_Da64.29
7177.48D87015.2'miRNA'11DELoss-178.140N/AD87015.2N/A
8187.48FOSB'protein_coding'14DELoss-177.992AB FOSB0
9227.32NCF1'protein_coding'111AELoss-11.753EU ER1a0.00
10237.28CCDC152'protein_coding'19AELoss-2.7110EU ER1a77.78
11247.26IGL@'IG_V_gene'12DELoss-153.800N/AIGL@N/A
12277.10GTF2I'protein_coding'335AELoss-17.901ES E30a_E32a0
13287.07IL16'protein_coding'934AELoss-14.792EU AB E21a_E22a0
14326.91HLA-A'protein_coding'723AELoss-12.2614EU ES AB IR E7a_E9a33.33
15356.80HNRNPA1'protein_coding'213AELoss-109.913EU E3a_E4a50.00
16386.75EIF4E'protein_coding'29AELoss-32.434EU E5a_E6a100.00
17426.71AC034193.5'protein_coding'12AELoss-11.362EU ER2a100.00
18446.65ASNS'protein_coding'316AELoss-11.422EU E1a_E2b100.00
19456.65AC004833.1'pseudogene'13AELoss-18.052AB E2_Da0
20476.62HSPA8'protein_coding'211AELoss-58.022EU ES E2a_E4a0.00
21496.58FCER1G'protein_coding'27AELoss-2.352EU AB E6_Aa0
22526.57SAMSN1'protein_coding'516AELoss-16.081ES E7a_E9a0
23546.56IGHG4'IG_C_gene'29AELoss-2.684EU AB E1_Da0.00
24556.54TBC1D4'protein_coding'221AELoss-8.8020EU CE ER9a100.00
25576.49D87024.1'miRNA'11DELoss-90.090N/AD87024.1N/A
26596.42SLC37A1'protein_coding'323AELoss-14.3223AB IR E6_Da0
27606.41IGLV3-21'IG_V_gene'12DELoss-85.080N/AIGLV3-21N/A
28646.35HNRPA2B1'protein_coding'519AELoss-53.291ES E8a_E10a0
29666.33NFIC'protein_coding'514AELoss-5.348EU AB CE E7_Aa60.00
30716.27P2RY5'protein_coding'28AELoss-4.121EU ER4a0
31796.15AHSA2'protein_coding'723AELoss-9.719EU AB IR E11_Db0
32816.13PGAM1'protein_coding'14AELoss-44.584EU ER3a66.67
33836.10STAG3'protein_coding'440AELoss-6.845EU AB E21_Aa0.00
34846.10CD52'protein_coding'12AELoss-10.992EU AB E2_Aa0
35856.08AB019438.1'IG_V_gene'12DELoss-67.750N/AAB019438.1N/A
36866.07PAOX'protein_coding'920AELoss-7.217EU ES AB E7_Aa33.33
37876.07TMBIM4'protein_coding'312AELoss-12.611AB E8_Da0
38906.02IGHA1'IG_C_gene'13DELoss-64.970N/AIGHA1N/A
39916.02NCF1C'protein_coding'213AELoss-7.222EU ER1b100.00
40926.01IGHD'IG_C_gene'27DELoss-64.560N/AIGHDN/A
41975.97TPT1'protein_coding'412AELoss-13.831ES E2a_E4a0
421005.96FNBP1'protein_coding'525AELoss-10.2210EU ES AB CE E12a_E15b100.00
431015.94HN1'protein_coding'512AELoss-15.054EU AB ER5a0.00
441025.91AB019440.1'IG_V_gene'12DELoss-60.240N/AAB019440.1N/A
451045.90CBWD2'protein_coding'319AELoss-11.342EU ER15a0.00
461055.88AC004053.1'protein_coding'432AELoss-11.003EU AB ER2b0.00
471075.86CLIP3'protein_coding'114AELoss-3.583EU CE I7_AR2100.00
481105.83RPSA'protein_coding'17AELoss-11.833EU E3a_E4a0.00
491115.83SH3YL1'protein_coding'727AELoss-6.542EU ER13a0.00
501145.76C14orf104'protein_coding'56AELoss-6.393EU AB E1_Db100.00
511155.75ZCCHC10'protein_coding'25AELoss-12.992EU ES E3a_E5a0.00
521165.75CD40'protein_coding'414AELoss-12.717EU ES AB ENST000003722760.00
531185.74RGS2'protein_coding'15DELoss-53.531EU RGS20
541275.65MAML1'protein_coding'28AELoss-11.773EU AB CE E2_Da0
551305.61NR4A1'protein_coding'615DELoss-48.926EU ES AB NR4A10.00
561325.61MRPL15'protein_coding'15AELoss-12.602EU ES E3a_E5a0.00
571335.60RBM5'protein_coding'227AELoss-13.155EU ES AB E16a_E18a0.00
581355.60ZNF410'protein_coding'314AELoss-25.942EU ES E9a_E11a0.00
591385.54PLEKHK1'protein_coding'417AELoss-8.2710EU ER4a100.00
601445.49GUK1'protein_coding'1536AELoss-10.132EU I4_SR30
611485.44IGHJ3P'IG_pseudogene'11DELoss-43.560N/AIGHJ3PN/A
621495.44AB019439.1'IG_V_gene'12DELoss-43.420N/AAB019439.1N/A
631505.44JUN'protein_coding'11DELoss-43.320N/AJUNN/A
641525.43PHTF2'protein_coding'321AELoss-20.373ES AB CE E2_Aa0
651535.42GMDS'protein_coding'213AELoss-7.055EU CE I9_AR8100.00
661555.42CHKB'protein_coding'111AELoss-11.365EU AB ER10a0.00
671575.42AUP1'protein_coding'217AELoss-7.536EU ES AB E3a_E6a100.00
681595.41IGHA2'IG_C_gene'25AELoss-402.268EU AB CE E3a_E4a25.00
691605.40AFF3'protein_coding'429AELoss-7.155ES AB CE E1a_E5a100.00
701665.36IGLV3-1'IG_V_gene'12DELoss-40.940N/AIGLV3-1N/A
711675.35AL122127.6'IG_J_gene'11DELoss-40.890N/AAL122127.6N/A
721685.32PTK2B'protein_coding'438AELoss-7.706EU CE E28a_E29a100.00
731695.32PPP1R15A'protein_coding'13DELoss-40.020N/APPP1R15AN/A
741735.31CUX1'protein_coding'535AELoss-9.9921EU ES AB CE ENST0000033899066.67
751755.30C17orf44'protein_coding'13AELoss-3.522EU AB E2_Da0
761795.28ULK3'protein_coding'115AELoss-6.741EU E13a_E14a0
771805.28C16orf7'protein_coding'322AELoss-8.5210EU ES AB CE E6_Aa0.00
781825.27WDR66'protein_coding'223AELoss-6.1017EU E16a_E17a62.50
791845.26WSB1'protein_coding'29AELoss-26.002ES E1a_E3a0.00
801865.24IGHG3'IG_C_gene'610DELoss-37.765EU AB CE IGHG30.00
811885.23FAM3C'protein_coding'110AELoss-16.163EU ES E8a_E9a100.00
821895.22AB019438.1'IG_V_gene'12DELoss-37.300N/AAB019438.1N/A
831905.21GTF2H2B'protein_coding'117AELoss-10.143EU ER5a0.00
841935.16IGLV2-5'IG_pseudogene'11DELoss-35.870N/AIGLV2-5N/A
851955.16CD46'protein_coding'1515AELoss-4.632ES CE I8_AR20
861965.15ACTR6'protein_coding'111AELoss-8.761EU E1a_E2a0
871995.12RHBDD1'protein_coding'311AELoss-9.713EU AB CE E1_Da0
882015.12AL645929.4'protein_coding'17AELoss-10.6311EU ES AB E2a_E3a85.71
892025.12MOBKL3'protein_coding'616AELoss-10.185EU ES E2a_E5a50.00
902035.11PAPOLG'protein_coding'222AELoss-7.451ES E14a_E16a0
912045.11MAF1'protein_coding'18AELoss-8.153AB IR I5_AR10
922055.11HSPA6'protein_coding'11DELoss-34.520N/AHSPA6N/A
932065.10AB019438.1'IG_V_gene'12DELoss-34.270N/AAB019438.1N/A
942105.07STK17A'protein_coding'17AELoss-6.021ES E3a_E5a0
952125.06HNRNPH2'protein_coding'512AELoss-5.586EU ES IR Ix75.00
962135.06U11'snRNA'11DELoss-33.280N/AU11N/A
972145.06ORC4L'protein_coding'317AELoss-9.033EU E2a_E3a0.00
982155.05AB019441.1'IG_V_gene'12DELoss-16.482EU AB019441.1100.00
992175.05AB019439.1'IG_V_gene'12DELoss-33.190N/AAB019439.1N/A
1002185.04MOSC2'protein_coding'311AELoss-8.475EU AB E6_Da0.00
1012205.03IGLV3-25'IG_V_gene'12DELoss-32.730N/AIGLV3-25N/A
1022254.99SASH3'protein_coding'18AELoss-6.031ES E2a_E4a0
1032274.99MS4A7'protein_coding'27AELoss-6.508EU AB CE E3a_E4a66.67
1042294.98AB019439.1'IG_V_gene'12DELoss-31.600N/AAB019439.1N/A
1052304.98PIK3AP1'protein_coding'320AELoss-9.402ES E16a_E19a0.00
1062314.98HSPA1B'protein_coding'11DELoss-31.560N/AHSPA1BN/A
1072344.97AB019440.1'IG_V_gene'12DELoss-31.281EU AB019440.10
1082384.96ZNF276'protein_coding'111AELoss-6.3713EU AB IR I933.33
1092414.95TNFSF13'protein_coding'823AELoss-2.867EU ES ER9b50.00
1102484.89C3orf63'protein_coding'226AELoss-6.611ES E11a_E14a0
1112494.89HLA-DPB1'protein_coding'818AELoss-4.455EU ES AB ENST000003952720.00
1122524.88IGLV1-36'IG_V_gene'12DELoss-29.530N/AIGLV1-36N/A
1132544.88AB019439.1'IG_V_gene'12DELoss-29.460N/AAB019439.1N/A
1142604.85RECK'protein_coding'222AELoss-4.605EU E8a_E9a50.00
1152624.84ANXA5'protein_coding'215AELoss-6.112EU ES E7a_E9a0.00
1162644.82NLRC5'protein_coding'351AELoss-5.565EU ES E32a_E33a25.00
1172654.82RAPGEF1'protein_coding'837AELoss-17.606EU IR CE I13_AR20
1182704.80PRPSAP2'protein_coding'215AELoss-32.904ES E11a_E13a0.00
1192724.79HLA-F'protein_coding'616AELoss-3.393EU IR I50
1202734.79AC096767.3'IG_V_gene'12DELoss-27.620N/AAC096767.3N/A
1212744.78ENTPD1'protein_coding'414AELoss-8.291CE I1_AR10
1222784.78HERC2P3'protein_coding'127AELoss-6.506EU E22a_E23a40.00
1232824.77ZNF451'protein_coding'622AELoss-8.486EU ES CE ENST0000037071033.33
1242834.77IGLV3-16'IG_V_gene'12DELoss-27.210N/AIGLV3-16N/A
1252844.76MTMR1'protein_coding'321AELoss-6.032EU AB E2a_E3a0
1262854.75KBTBD4'protein_coding'412AELoss-7.471AB E4_Da0
1272874.75SMARCA5'protein_coding'124AELoss-18.851ES E13a_E15a0
1282884.75RAP1B'protein_coding'210AELoss-21.763EU E6a_E7a50.00
1292904.74WBP5'protein_coding'23AELoss-7.561ES ENST000003726560
1302914.74IGLVI-70'IG_pseudogene'12DELoss-26.680N/AIGLVI-70N/A
1312934.74UBE2K'protein_coding'29AELoss-8.292EU ES E5a_E7a0.00
1322944.73CUL3'protein_coding'420AELoss-15.611AB E4_Da0
1332964.73MAT2A'protein_coding'315AELoss-5.3512AB IR E6_Da0
1342974.73RP4-604K5.1'protein_coding'512AELoss-6.042EU E3a_E4a0.00
1352984.72RNFT1'protein_coding'312AELoss-8.473EU AB E8a_E9a0.00
1362994.72LRCH4'protein_coding'118AELoss-6.182EU ES E17a_E18a0.00
1373044.71ADCY3'protein_coding'224AELoss-5.306EU AB E20_Aa0.00
1383064.71FOS'protein_coding'14DELoss-26.095EU AB IR FOS0
1393104.69AGPAT5'protein_coding'18AELoss-5.691ES E4a_E7a0
1403114.68SNX5'protein_coding'418AELoss-14.622EU E1a_E2b100.00
1413134.68STK38'protein_coding'217AELoss-7.031ES E9a_E11a0
1423144.68C2orf56'protein_coding'213AELoss-5.814EU ES AB IR E5b_E7a0.00
1433154.68MAX'protein_coding'69AELoss-5.881EU E3a_E4a0
1443164.67C12orf35'protein_coding'38AELoss-5.882EU ES E4a_E6a0.00
1453174.67RBKS'protein_coding'18AELoss-104.504EU AB CE I1_AR10
1463194.66KIAA2013'protein_coding'48AELoss-6.531CE I4_AR140
1473204.66IGLV2-11'IG_V_gene'12DELoss-25.331EU IGLV2-110
1483214.66AC116654.4'IG_V_gene'12DELoss-25.320N/AAC116654.4N/A
1493234.66PIGN'protein_coding'231AELoss-7.042EU E2a_E3a0.00
1503244.65IGKV1-5'IG_V_gene'12DELoss-25.170N/AIGKV1-5N/A
1513274.65UFC1'protein_coding'16AELoss-7.163EU ES E2a_E4a0.00
1523284.65RGS1'protein_coding'25DELoss-25.030N/ARGS1N/A
1533294.65IGLV6-57'IG_V_gene'12DELoss-25.020N/AIGLV6-57N/A
1543324.62MTIF3'protein_coding'311AELoss-3.753EU ES E2a_E4b100.00
1553334.62DUSP1'protein_coding'14DELoss-24.552IR DUSP10
1563384.61ILKAP'protein_coding'112AELoss-6.181ES E7a_E9a0
1573414.60CHPT1'protein_coding'19AELoss-4.852EU AB E3_Da0
1583434.59ZNF783'protein_coding'114AELoss-2.607EU AB CE I5_AR20.00
1593474.58HIST1H2AH'protein_coding'11DELoss-23.990N/AHIST1H2AHN/A
1603514.57RAB2'protein_coding'313AELoss-7.351ES E7a_E9a0
1613534.57IQGAP1'protein_coding'138AELoss-6.831AB E2_Da0
1623584.56CCDC90B'protein_coding'19AELoss-6.961EU E1a_E2a0
1633614.55GCSH'protein_coding'15AELoss-5.392EU E2a_E3a100.00
1643624.55PPP1R10'protein_coding'120AELoss-12.561ES E10a_E12a0
1653694.52HIST1H4C'protein_coding'11DELoss-22.990N/AHIST1H4CN/A
1663704.52PLSCR1'protein_coding'19AELoss-4.691ES E1a_E3a0
1673714.52IGLC1'IG_C_gene'11DELoss-22.960N/AIGLC1N/A
1683724.52CPEB2'protein_coding'514AELoss-5.001CE I3_AR30
1693734.52RPL3'protein_coding'417AELoss-13.5335EU ES AB IR CE I2_AR20.00
1703744.51D86994.1'miRNA'11DELoss-22.750N/AD86994.1N/A
1713764.50SH3TC1'protein_coding'322AELoss-15.304EU CE I13_AR150.00
1723794.49ARRDC2'protein_coding'29AELoss-6.711ES E4a_E6a0
1733834.48TRIB2'protein_coding'37AELoss-4.412EU E2a_E3a100.00
1743844.48ARG2'protein_coding'18AELoss-29.2015EU AB ER5a91.67
1753854.47C20orf30'protein_coding'916AELoss-4.891ES E1a_E3a0
1763864.47RAB3GAP1'protein_coding'227AELoss-6.631EU E24a_E24b0
1773894.47KIAA0528'protein_coding'228AELoss-4.562EU E8a_E9a100.00
1783904.46IGLV5-45'IG_V_gene'12DELoss-21.980N/AIGLV5-45N/A
1793954.44DIDO1'protein_coding'927AELoss-6.363AB CE E1_Da0
1803964.44EHMT1'protein_coding'534AELoss-23.527EU ES AB E12_Da0.00
1813974.44HIST1H2BD'protein_coding'23AELoss-4.593EU ER1b50.00
1824004.44KIAA0319L'protein_coding'423AELoss-5.471ES E15a_E17a0
1834014.43SQSTM1'protein_coding'210AELoss-5.673AB IR I6_AR10
1844064.42AL122127.6'IG_J_gene'11DELoss-21.470N/AAL122127.6N/A
1854074.42ZNF808'protein_coding'14AELoss-5.741CE I1_AR40
1864084.42PALLD'protein_coding'426AELoss-2.801EU ER8a0
1874094.42AB019440.1'IG_V_gene'12DELoss-21.360N/AAB019440.1N/A
1884134.41RPS21'protein_coding'515AELoss-2.365EU ER3l50.00
1894154.41ARPC3'protein_coding'29AELoss-5.271ES E5a_E7a0
1904164.41IGLV3-19'IG_V_gene'12DELoss-21.201EU IGLV3-190
1914184.40SIDT1'protein_coding'227AELoss-5.903EU CE I24_AR10.00
1924204.40OSGEP'protein_coding'111AELoss-5.161ES E7a_E9a0
1934214.39ATP6V0A2'protein_coding'120AELoss-6.971ES E15a_E17a0
1944244.39FGD6'protein_coding'121DELoss-20.994EU ES FGD60.00
1954254.39HSP90B1'protein_coding'118AELoss-5.693EU ES E5a_E7a0.00
1964294.39TP53INP2'protein_coding'27DELoss-20.923EU TP53INP250.00
1974314.38FAM65B'protein_coding'326AELoss-5.865EU ES E1a_E3a50.00
1984324.38C1orf85'protein_coding'39AELoss-5.181I6_SR10
1994334.37PDCD6IP'protein_coding'118AELoss-7.262EU ES E5a_E7a0.00
2004344.37SMS'protein_coding'314AELoss-7.212EU ES E2a_E5a0.00
2014354.37AB019438.1'IG_V_gene'12DELoss-20.660N/AAB019438.1N/A
2024394.36CUGBP1'protein_coding'517AELoss-17.561EU E14a_E15a0
2034404.36ANAPC7'protein_coding'111AELoss-5.481ES E8a_E10a0
2044414.36AB019440.1'IG_V_gene'12DELoss-20.580N/AAB019440.1N/A
2054434.36AC116654.4'IG_V_gene'12DELoss-20.510N/AAC116654.4N/A
2064454.36PSMC6'protein_coding'114AELoss-5.242EU E4a_E5a100.00
2074504.34DUSP'protein_coding'14DELoss-20.191AB DUSP0
2084514.33HIST1H2AL'protein_coding'11DELoss-20.120N/AHIST1H2ALN/A
2094534.32IGHV1-69'IG_V_gene'12DELoss-20.000N/AIGHV1-69N/A
2104554.32WDR42A'protein_coding'418AELoss-5.883ES AB E9a_E11a0.00
2114564.31GCC2'protein_coding'630AELoss-5.404EU CE I8_SR10.00
2124654.30VDAC2'protein_coding'416AELoss-14.043EU E5a_E6a0.00
2134694.29AC136428.3'protein_coding'12DELoss-19.570N/AAC136428.3N/A
2144714.29ARMC8'protein_coding'428AELoss-6.454EU ES E1a_E4a0.00
2154724.29HIST1H4F'protein_coding'11DELoss-19.530N/AHIST1H4FN/A
2164744.29PSMD10'protein_coding'716AELoss-6.521EU E2a_E3b0
2174754.29DALRD3'protein_coding'317AELoss-5.882EU AB E13_Da0
2184764.28BST2'protein_coding'15AELoss-5.561ES E1a_E4a0
2194784.28COL9A3'protein_coding'132DELoss-19.450N/ACOL9A3N/A
2204794.28TMEM156'protein_coding'210AELoss-8.435EU ES E1a_E3a75.00
2214804.27JMJD2C'protein_coding'325AELoss-5.194CE I17_AR50
2224824.27ARHGEF12'protein_coding'241AELoss-4.891CE I1_AR20
2234834.27RANBP2'protein_coding'231AELoss-7.022ES AB E18a_E20a0
2244854.26GLT8D1'protein_coding'627AELoss-4.561I1_SR10
2254864.26SEMA7A'protein_coding'114AELoss-3.903EU AB E10_Aa100.00
2264884.25TMSL3'protein_coding'23AELoss-3.652EU AB ER1b0
2274894.25NUMB'protein_coding'410AELoss-9.254EU ES ER9a100.00
2284954.24IGLV1-44'IG_V_gene'12DELoss-18.900N/AIGLV1-44N/A
2294984.24IL4I1'protein_coding'314AELoss-2.921AB E1_Ab0
2304994.23CLCC1'protein_coding'921AELoss-5.501AB E13_Db0
2315014.23TMEM50A'protein_coding'17AELoss-5.691ES E2a_E4a0
2325024.23RFX5'protein_coding'317AELoss-5.161ES E1a_E3a0
2335044.23AP1GBP1'protein_coding'629AELoss-5.703ES I15_SR10
2345064.23SFRS12IP1'protein_coding'310AELoss-5.161EU E1a_E2a0
2355074.22ME2'protein_coding'216AELoss-6.161ES E13a_E15a0
2365084.22UBE3C'protein_coding'224AELoss-5.391ES E15a_E17a0
2375104.22AC011841.7'protein_coding'11DELoss-18.630N/AAC011841.7N/A
2385114.22NUDT4'protein_coding'15AELoss-12.183EU E3a_E4a100.00
2395134.21ZNF641'protein_coding'16AELoss-4.651ES E3a_E5a0
2405154.21C8orf38'protein_coding'524AELoss-4.958EU AB CE E2_Aa0.00
2415174.20AL122127.6'IG_J_gene'11DELoss-18.390N/AAL122127.6N/A
2425234.19CANX'protein_coding'326AELoss-11.261ES E5a_E7b0
2435244.19DDX23'protein_coding'117AELoss-6.231ES E6a_E8a0
2445254.19AB019439.1'IG_V_gene'12DELoss-18.210N/AAB019439.1N/A
2455264.19IGHJ2P'IG_pseudogene'11DELoss-18.200N/AIGHJ2PN/A
2465284.19LYPLAL1'protein_coding'28AELoss-3.213EU E1a_E2a100.00
2475294.18AC110080.2'IG_V_gene'12DELoss-18.190N/AAC110080.2N/A
2485314.18D87023.1'IG_J_gene'11DELoss-18.160N/AD87023.1N/A
2495334.18PRDX5'protein_coding'47AELoss-5.022IR I10
2505344.18SEC31A'protein_coding'640AELoss-6.204EU ES E2a_E3a33.33
2515364.17AC021317.19'protein_coding'113AELoss-15.571EU ER6a0