Summary page for comparison: 'DLBCL_vs_BCell1' (HS0640_vs_HS0669) - Project: Lymphoma


Download complete candidate list as tab delimited text file: DLBCL_vs_BCell1.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 8,346 (of 36,953 possible genes)

DE Genes: 3,722

AE Genes: 6,152

Alternative Exon Usage (EU) Genes: 5,102

Alernative Exon Skipping (ES) Genes: 832

Alternative Exon Boundary (AB) Genes: 1,589

Intron Retention (IR) Genes: 216

Cryptic Exon (CE) Genes: 493


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.74HLA-DQB1'protein_coding'817AELoss-247.084EU ES E8a_E9a100.00
2215.49HLA-DRB1'protein_coding'16AELoss-930.841EU E2a_E3a0
3314.11IGHG4'IG_C_gene'29AELoss-49.308EU AB CE I4_AR150.00
4412.23IGHV4-31'IG_C_gene'27AEGain72.952EU E4a_E5a0.00
5511.43HLA-DRB5'protein_coding'27AEGain599.094EU ES E3a_E4a66.67
6610.42AC022210.8'pseudogene'13AEGain74.012ES AB E1_Da0
7710.37BRE'protein_coding'721AELoss-184.0110EU AB CE I1_AR175.00
8810.08SPARC'protein_coding'110DEGain268.342EU SPARC100.00
999.63HLA-B'protein_coding'521AELoss-40.9511EU ES ENST0000040662640.00
10109.60TMEM77'protein_coding'211AEGain163.603EU E1a_E2a100.00
11119.18SEPP1'protein_coding'14DEGain580.000N/ASEPP1N/A
12129.10RPS4Y1'protein_coding'17DELoss-549.110N/ARPS4Y1N/A
13139.01CXCL9'protein_coding'14DEGain514.730N/ACXCL9N/A
14148.95APOE'protein_coding'14DEGain495.290N/AAPOEN/A
15158.87TMBIM4'protein_coding'312AELoss-16.743EU AB E8_Da100.00
16168.74RPL9'protein_coding'18AEGain3.5414EU AB IR E6a_E7a77.78
17178.70AHSA2'protein_coding'723AELoss-8.0713EU ES AB IR E11_Db50.00
18188.65CCL19'protein_coding'26DEGain401.030N/ACCL19N/A
19198.64D87015.2'miRNA'11DELoss-400.000N/AD87015.2N/A
20208.61IGFBP7'protein_coding'15DEGain389.980N/AIGFBP7N/A
21218.53FUBP1'protein_coding'526AEGain39.395EU AB IR CE E20_Aa0
22228.53EIF4E'protein_coding'29AELoss-71.145EU E5a_E6a75.00
23238.51PTPRC'protein_coding'1143AEGain48.005EU ES E4a_E9a75.00
24248.47CCL21'protein_coding'26DEGain355.510N/ACCL21N/A
25258.40APOC1'protein_coding'15DEGain338.170N/AAPOC1N/A
26268.38LUM'protein_coding'13DEGain334.000N/ALUMN/A
27278.34SC-9C5.12'protein_coding'35AEGain14.4112EU AB IR E3_Aa0
28288.22PTGDS'protein_coding'310DEGain297.730N/APTGDSN/A
29298.20AC004448.3'pseudogene'12AELoss-4.253EU AB E2_Aa0
30308.18IGHD'IG_C_gene'27DELoss-290.510N/AIGHDN/A
31318.16C3'protein_coding'141DEGain285.800N/AC3N/A
32328.11OSBPL9'protein_coding'835AEGain26.434EU ES ER1a33.33
33338.02CCDC144B'protein_coding'221AELoss-20.816EU AB IR CE I70.00
34348.02MMP9'protein_coding'113DEGain259.050N/AMMP9N/A
35357.97BGN'protein_coding'211DEGain249.910N/ABGNN/A
36367.92IGHE'IG_C_gene'211DEGain241.860N/AIGHEN/A
37377.89LYZ'protein_coding'14DEGain237.841EU LYZ0
38387.80DUT'protein_coding'211AEGain11.995EU AB ER1e66.67
39397.80AL122127.6'IG_J_gene'11DELoss-222.460N/AAL122127.6N/A
40407.79CHCHD10'protein_coding'27AEGain31.283EU ER1a50.00
41417.76PICALM'protein_coding'523AEGain16.447EU ES ER18a83.33
42427.76PLA2G2D'protein_coding'14DEGain217.150N/APLA2G2DN/A
43437.75ENPP2'protein_coding'226DEGain215.080N/AENPP2N/A
44447.71NCOA4'protein_coding'516AEGain33.913EU ES E2a_E4a0.00
45457.69COL1A1'protein_coding'151DEGain205.850N/ACOL1A1N/A
46467.68GPNMB'protein_coding'314DEGain205.730N/AGPNMBN/A
47477.66FOSB'protein_coding'14DELoss-202.272AB FOSB0
48487.56FN1'protein_coding'1050DEGain188.590N/AFN1N/A
49497.51C1QB'protein_coding'13DEGain182.060N/AC1QBN/A
50507.47COL1A2'protein_coding'254DEGain177.010N/ACOL1A2N/A
51517.47TBC1D4'protein_coding'221AELoss-10.7623EU AB CE E4a_E5a100.00
52527.43HIST1H2AC'protein_coding'35AELoss-14.151AB E3_Aa0
53537.43TOR1AIP1'protein_coding'415AELoss-19.773EU E2a_E3a100.00
54547.41COL3A1'protein_coding'254DEGain170.100N/ACOL3A1N/A
55557.40SLC40A1'protein_coding'18DEGain169.230N/ASLC40A1N/A
56567.37TCTN1'protein_coding'827AELoss-3.8517EU ES AB CE E6_Da72.73
57577.35A2M'protein_coding'240DEGain162.880N/AA2MN/A
58587.30TAGLN'protein_coding'310DEGain57.387EU AB TAGLN50.00
59597.23SERPING1'protein_coding'617DEGain150.410N/ASERPING1N/A
60607.23CCL18'protein_coding'13DEGain150.210N/ACCL18N/A
61617.23TIMP1'protein_coding'411DEGain149.600N/ATIMP1N/A
62627.22TMEM176B'protein_coding'29DEGain149.120N/ATMEM176BN/A
63637.20TIMP3'protein_coding'28DEGain146.930N/ATIMP3N/A
64647.18AIF1'protein_coding'59AEGain265.0010EU AB ER3a87.50
65657.14CD52'protein_coding'12AELoss-20.382EU AB E2_Aa0
66667.12C11orf10'protein_coding'14AELoss-13.323EU E3a_E4a100.00
67677.11ADAMDEC1'protein_coding'215DEGain138.430N/AADAMDEC1N/A
68687.11NUTF2'protein_coding'15AEGain22.262EU CE I4_AR20
69697.07RPS27'protein_coding'37AELoss-54.633EU E3c_E4a0.00
70707.03TK1'protein_coding'210AEGain3.183EU AB E5_Da100.00
71716.94C1QA'protein_coding'311DEGain122.970N/AC1QAN/A
72726.94TYROBP'protein_coding'15DEGain122.450N/ATYROBPN/A
73736.90MTMR10'protein_coding'218AEGain15.323AB E17_Aa0
74746.89C1QC'protein_coding'37DEGain118.600N/AC1QCN/A
75756.88SIRPB1'protein_coding'819AEGain9.425EU AB E4_Da100.00
76766.86CCL2'protein_coding'13DEGain116.310N/ACCL2N/A
77776.84RPS24'protein_coding'39AEGain19.222ES ENST00000360830100.00
78786.81CTSL1'protein_coding'414DEGain112.310N/ACTSL1N/A
79796.81TMEM176A'protein_coding'17DEGain111.940N/ATMEM176AN/A
80806.80CCDC152'protein_coding'19AELoss-2.1912EU E6a_E7a81.82
81816.79POSTN'protein_coding'524DEGain110.840N/APOSTNN/A
82826.78HLA-DOA'protein_coding'28AELoss-11.101ES E3b_E5a0
83836.77FSTL1'protein_coding'111DEGain109.470N/AFSTL1N/A
84846.76DDX17'protein_coding'519AEGain50.168EU AB IR ER11b100.00
85856.76IGHA1'IG_C_gene'13DELoss-108.150N/AIGHA1N/A
86866.75PTS'protein_coding'16AEGain12.333EU ES E2a_E4a50.00
87876.74AUP1'protein_coding'217AEGain38.608EU ES AB E4a_E5a100.00
88886.73C1S'protein_coding'634DEGain105.990N/AC1SN/A
89896.69RARRES1'protein_coding'16DEGain103.130N/ARARRES1N/A
90906.64MS4A6A'protein_coding'17DEGain99.670N/AMS4A6AN/A
91916.63AB019438.1'IG_V_gene'12DELoss-99.190N/AAB019438.1N/A
92926.63AC004053.1'protein_coding'432AELoss-16.003EU AB ER2b0.00
93936.63SPARCL1'protein_coding'111DEGain98.740N/ASPARCL1N/A
94946.62SNRPA1'protein_coding'211AEGain12.564EU AB CE E7_Da0
95956.56ITGB2'protein_coding'827AEGain53.798EU ES AB CE ER1b75.00
96966.56TET1'protein_coding'112AELoss-48.001CE I3_AR10
97976.55FCER1G'protein_coding'27DEGain37.787EU FCER1G66.67
98986.54HNRNPA1'protein_coding'213AELoss-80.253EU E3a_E4a50.00
99996.53ASMTL'protein_coding'215AEGain11.824EU AB E13_Aa100.00
1001006.53SERPINF1'protein_coding'18DEGain92.541AB SERPINF10
1011016.51PGAM1'protein_coding'14AELoss-41.814EU ER3a66.67
1021026.50AC004098.1'pseudogene'12AELoss-12.161AB E1_Da0
1031036.48IGLV3-21'IG_V_gene'12DELoss-89.570N/AIGLV3-21N/A
1041046.45DIDO1'protein_coding'927AELoss-16.353EU AB E2a_E3a0.00
1051056.44CST3'protein_coding'38DEGain87.110N/ACST3N/A
1061066.42C10orf32'protein_coding'522AELoss-8.715EU AB E5a_E6a66.67
1071076.42DCN'protein_coding'610DEGain85.894EU ES DCN66.67
1081086.41IL18'protein_coding'16DEGain85.261EU IL180
1091096.41AAAS'protein_coding'217AEGain13.823AB IR E2_Aa0
1101106.41COL6A1'protein_coding'135DEGain84.780N/ACOL6A1N/A
1111116.40NCF1C'protein_coding'213AELoss-9.982EU ER1b100.00
1121126.38ARHGEF1'protein_coding'639AEGain41.157EU ES AB E15_Db25.00
1131136.38THY1'protein_coding'14DEGain83.000N/ATHY1N/A
1141146.36CD14'protein_coding'24DEGain81.860N/ACD14N/A
1151156.35NCK1'protein_coding'14AEGain17.451CE I2_AR20
1161166.34CSF1R'protein_coding'224DEGain80.960N/ACSF1RN/A
1171176.32C9orf86'protein_coding'625AEGain14.062AB E1_Ab0
1181186.31TGIF2'protein_coding'24AEGain10.403EU AB E1_Da0.00
1191196.29AB019438.1'IG_V_gene'12DELoss-78.500N/AAB019438.1N/A
1201206.29RPL15'protein_coding'26AELoss-15.973EU AB ER2a0.00
1211216.27SLCO2B1'protein_coding'214DEGain77.300N/ASLCO2B1N/A
1221226.26RASSF4'protein_coding'515DEGain76.890N/ARASSF4N/A
1231236.26PPARA'protein_coding'517AELoss-5.197EU AB E6_Da66.67
1241246.26C14orf156'protein_coding'14AELoss-10.344EU E3a_E4a33.33
1251256.25HLA-A'protein_coding'723AEGain423.9812EU ES AB E8b_E9a37.50
1261266.23EIF1AY'protein_coding'29DELoss-74.880N/AEIF1AYN/A
1271276.21AB019439.1'IG_V_gene'12DELoss-73.790N/AAB019439.1N/A
1281286.20PLA2G7'protein_coding'112DEGain73.340N/APLA2G7N/A
1291296.19AB019439.1'IG_V_gene'12DELoss-72.821EU AB019439.10
1301306.18COBLL1'protein_coding'521AELoss-8.735EU ES E9a_E10a75.00
1311316.16BCL2A1'protein_coding'23AEGain9.423EU E2a_E3a100.00
1321326.14COL6A2'protein_coding'533DEGain70.470N/ACOL6A2N/A
1331336.13AL645929.4'protein_coding'17AELoss-12.748EU ES AB E2a_E3a33.33
1341346.09RARRES2'protein_coding'16DEGain68.280N/ARARRES2N/A
1351356.08OR2I1P'unprocessed_pseudogene'11DEGain67.620N/AOR2I1PN/A
1361366.05D87024.1'miRNA'11DELoss-66.460N/AD87024.1N/A
1371376.05IL32'protein_coding'613DEGain28.625EU AB IL3266.67
1381386.03IGHA2'IG_C_gene'25AELoss-938.447EU AB CE E3a_E4a33.33
1391396.03AB019439.1'IG_V_gene'12DELoss-65.250N/AAB019439.1N/A
1401406.02NCF1'protein_coding'111AEGain15.205EU AB E6_Da0.00
1411416.02CLK1'protein_coding'418AEGain12.5911EU ES AB IR E4_Da0.00
1421426.01IGHM'IG_C_gene'26DELoss-64.573EU AB IGHM0.00
1431436.00LGALS3'protein_coding'28DEGain64.061ES LGALS30
1441445.98AC004833.1'pseudogene'13AELoss-14.321AB E2_Da0
1451455.98ITGAX'protein_coding'230DEGain63.110N/AITGAXN/A
1461465.97DDX3Y'protein_coding'220DELoss-62.900N/ADDX3YN/A
1471475.96PMPCA'protein_coding'214AEGain12.364EU AB E6_Da0.00
1481485.96C7'protein_coding'118DEGain62.090N/AC7N/A
1491495.95PSMA8'protein_coding'29AELoss-11.702EU CE I4_AR10
1501505.94CBWD1'protein_coding'827AELoss-15.394EU E8a_E9a0.00
1511515.93HN1'protein_coding'512AELoss-15.322EU AB ER5a0
1521525.92AC110080.2'IG_V_gene'12DELoss-60.350N/AAC110080.2N/A
1531535.91HS2ST1'protein_coding'415AEGain7.443EU ER10a100.00
1541545.90GZMK'protein_coding'15DEGain59.892EU GZMK0.00
1551555.89FOXP3'protein_coding'315DEGain59.350N/AFOXP3N/A
1561565.88AQP1'protein_coding'410DEGain58.840N/AAQP1N/A
1571575.87AC116654.4'IG_V_gene'12DELoss-58.580N/AAC116654.4N/A
1581585.87TMEM119'protein_coding'25DEGain58.500N/ATMEM119N/A
1591595.85IL4I1'protein_coding'314AELoss-2.543EU AB E1_Ab0
1601605.85AC140077.17'protein_coding'110DEGain57.572EU AC140077.170.00
1611615.85AB019439.1'IG_V_gene'12DELoss-57.520N/AAB019439.1N/A
1621625.83FABP4'protein_coding'14DEGain57.060N/AFABP4N/A
1631635.83PARP15'protein_coding'213DEGain25.3410EU ES AB IR CE PARP1540.00
1641645.83BOLA1'protein_coding'38AELoss-12.893EU AB E2_Aa0
1651655.82RGS2'protein_coding'15DELoss-56.362EU RGS2100.00
1661665.81BPNT1'protein_coding'315AEGain12.176EU ES AB E9c_E9d25.00
1671675.81COL4A1'protein_coding'467DEGain56.070N/ACOL4A1N/A
1681685.80DMAP1'protein_coding'518AEGain10.353EU ES AB E5_Da0.00
1691695.79AC005000.2'pseudogene'12AELoss-39.092IR I10
1701705.79CXCL10'protein_coding'25DEGain55.430N/ACXCL10N/A
1711715.79COL4A2'protein_coding'461DEGain55.420N/ACOL4A2N/A
1721725.77MMP2'protein_coding'113DEGain54.390N/AMMP2N/A
1731735.76AB019439.1'IG_V_gene'12DELoss-54.200N/AAB019439.1N/A
1741745.76CDK5RAP1'protein_coding'416AEGain11.174EU AB CE E11_Aa0
1751755.75TCN2'protein_coding'314DEGain53.780N/ATCN2N/A
1761765.75EFEMP1'protein_coding'416DEGain53.650N/AEFEMP1N/A
1771775.74AC096767.3'pseudogene'12DELoss-53.470N/AAC096767.3N/A
1781785.74SND1'protein_coding'124AEGain8.821AB E15_Aa0
1791795.74TIMP2'protein_coding'15DEGain53.320N/ATIMP2N/A
1801805.73MGP'protein_coding'14DEGain53.180N/AMGPN/A
1811815.73SNX22'protein_coding'28AEGain12.375EU AB CE E3_Da0.00
1821825.71DNAJC5B'protein_coding'16DEGain52.341EU DNAJC5B0
1831835.70BCL2'protein_coding'24DEGain52.1115EU AB CE BCL266.67
1841845.70AFF1'protein_coding'431AELoss-4.685EU AB ER4b0.00
1851855.70GSTM1'protein_coding'413DELoss-51.870N/AGSTM1N/A
1861865.69CYorf15A'protein_coding'28DELoss-51.550N/ACYorf15AN/A
1871875.68HIST1H3H'protein_coding'23AELoss-30.983AB CE I1_AR10
1881885.68VCAM1'protein_coding'414DEGain51.280N/AVCAM1N/A
1891895.67CDC42SE1'protein_coding'26AEGain32.384EU AB E3_Da0
1901905.67MARCH8'protein_coding'410AEGain9.598EU AB CE E7_Da0
1911915.66GIMAP4'protein_coding'13DEGain50.630N/AGIMAP4N/A
1921925.66AC096767.3'IG_V_gene'12DELoss-50.570N/AAC096767.3N/A
1931935.66CLIC2'protein_coding'27DEGain50.540N/ACLIC2N/A
1941945.64LILRB4'protein_coding'522DEGain50.020N/ALILRB4N/A
1951955.64ZNF85'protein_coding'26AELoss-16.523EU E3a_E4a100.00
1961965.64REC8'protein_coding'120AEGain9.343EU AB E12_Da0
1971975.63CYP27A1'protein_coding'19DEGain49.590N/ACYP27A1N/A
1981985.63WSB1'protein_coding'29AELoss-9.214ES AB IR E1a_E3a0
1991995.63PSMC6'protein_coding'114AELoss-9.055EU E4a_E5a50.00
2002005.62C11orf79'protein_coding'14AELoss-9.322EU ES E2a_E4a100.00
2012015.62MRPS28'protein_coding'13AEGain8.392EU ES E1a_E3a100.00
2022025.61RP11-488L18.4'unprocessed_pseudogene'14AELoss-3.726EU AB CE I1_SR10.00
2032035.61C18orf1'protein_coding'59AELoss-7.3410EU ES AB CE I5_AR160.00
2042045.61AL122127.6'IG_J_gene'11DELoss-48.760N/AAL122127.6N/A
2052055.60RPL38'protein_coding'15AELoss-11.132EU E4a_E5a100.00
2062065.60AFG3L2'protein_coding'117AEGain8.142EU E1a_E2a100.00
2072075.59BTNL9'protein_coding'420DEGain48.3322EU ES AB IR BTNL963.64
2082085.59ICAM2'protein_coding'15AEGain17.495EU AB CE E2_Aa100.00
2092095.59MFAP4'protein_coding'28DEGain48.160N/AMFAP4N/A
2102105.59CTHRC1'protein_coding'27DEGain48.150N/ACTHRC1N/A
2112115.58PSPH'protein_coding'312AEGain51.951ES ENST000003662330
2122125.58MTMR1'protein_coding'321AELoss-9.791EU E2a_E3a0
2132135.58MNDA'protein_coding'17DEGain47.680N/AMNDAN/A
2142145.57IL33'protein_coding'17DEGain47.550N/AIL33N/A
2152155.56ATP5O'protein_coding'17AEGain16.523EU ES E3a_E6a100.00
2162165.56HNRNPH3'protein_coding'212AELoss-11.312EU ES E2a_E5a0.00
2172175.55NNMT'protein_coding'13DEGain46.930N/ANNMTN/A
2182185.55SHC1'protein_coding'720AEGain23.834EU ES AB E2_Aa0.00
2192195.54AC116654.4'IG_V_gene'12DELoss-46.410N/AAC116654.4N/A
2202205.53EXOSC8'protein_coding'315AEGain7.945EU AB E4_Da100.00
2212215.53DDT'protein_coding'511AEGain7.533EU AB E7_Aa0
2222225.53HMGB1'protein_coding'718AEGain7.983EU ES ENST000003398720.00
2232235.53AC010422.7'protein_coding'19AEGain11.7913EU AB CE E3_Aa0
2242245.53ACSL5'protein_coding'523AEGain8.211ES E21a_E23a0
2252255.51IFITM3'protein_coding'27DEGain45.714EU AB IFITM30.00
2262265.51TBC1D22B'protein_coding'214AEGain12.413EU E1a_E2a100.00
2272275.51AB019440.1'IG_V_gene'12DELoss-45.550N/AAB019440.1N/A
2282285.51TNC'protein_coding'528DEGain45.460N/ATNCN/A
2292295.50SEPT11'protein_coding'110AEGain8.181AB E9_Da0
2302305.50CAMLG'protein_coding'14AELoss-10.894EU ES AB E3_Aa100.00
2312315.50CSTA'protein_coding'13DEGain45.110N/ACSTAN/A
2322325.49IGKV1-5'IG_V_gene'12DELoss-45.090N/AIGKV1-5N/A
2332335.49APBB2'protein_coding'221AEGain8.543EU ES ER9a50.00
2342345.49C20orf52'protein_coding'511AELoss-15.235EU AB E2_Da66.67
2352355.49PLAU'protein_coding'313DEGain44.810N/APLAUN/A
2362365.48RPS21'protein_coding'515AELoss-8.279EU ER3l62.50
2372375.47CALD1'protein_coding'417DEGain44.450N/ACALD1N/A
2382385.47SAR1A'protein_coding'619AELoss-8.583EU ES E1a_E4b0.00
2392395.47TIMD4'protein_coding'313DEGain44.310N/ATIMD4N/A
2402405.47DAB2'protein_coding'215DEGain44.260N/ADAB2N/A
2412415.46LSM12'protein_coding'15AELoss-17.793EU ER3a100.00
2422425.46PRKDC'protein_coding'287AEGain8.711ES ENST000003383680
2432435.46ABI3BP'protein_coding'567DEGain43.920N/AABI3BPN/A
2442445.46TNFAIP2'protein_coding'111DEGain43.890N/ATNFAIP2N/A
2452455.45PLVAP'protein_coding'16DEGain43.860N/APLVAPN/A
2462465.45GRINA'protein_coding'28AEGain50.125EU AB ER1a66.67
2472475.45C2'protein_coding'621DEGain43.590N/AC2N/A
2482485.43FNBP1'protein_coding'525AELoss-7.298EU ES AB CE E12a_E15b80.00
2492495.42CSGALNACT2'protein_coding'29AEGain8.731AB E6_Aa0
2502505.42NAPSB'protein_coding'19AEGain15.874EU CE I5_AR3100.00
2512515.41CCDC80'protein_coding'18DEGain42.610N/ACCDC80N/A


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.74HLA-DQB1'protein_coding'817AELoss-247.084EU ES E8a_E9a100.00
2215.49HLA-DRB1'protein_coding'16AELoss-930.841EU E2a_E3a0
3314.11IGHG4'IG_C_gene'29AELoss-49.308EU AB CE I4_AR150.00
4412.23IGHV4-31'IG_C_gene'27AEGain72.952EU E4a_E5a0.00
5511.43HLA-DRB5'protein_coding'27AEGain599.094EU ES E3a_E4a66.67
6610.42AC022210.8'pseudogene'13AEGain74.012ES AB E1_Da0
7710.37BRE'protein_coding'721AELoss-184.0110EU AB CE I1_AR175.00
8810.08SPARC'protein_coding'110DEGain268.342EU SPARC100.00
999.63HLA-B'protein_coding'521AELoss-40.9511EU ES ENST0000040662640.00
10109.60TMEM77'protein_coding'211AEGain163.603EU E1a_E2a100.00
11158.87TMBIM4'protein_coding'312AELoss-16.743EU AB E8_Da100.00
12168.74RPL9'protein_coding'18AEGain3.5414EU AB IR E6a_E7a77.78
13178.70AHSA2'protein_coding'723AELoss-8.0713EU ES AB IR E11_Db50.00
14218.53FUBP1'protein_coding'526AEGain39.395EU AB IR CE E20_Aa0
15228.53EIF4E'protein_coding'29AELoss-71.145EU E5a_E6a75.00
16238.51PTPRC'protein_coding'1143AEGain48.005EU ES E4a_E9a75.00
17278.34SC-9C5.12'protein_coding'35AEGain14.4112EU AB IR E3_Aa0
18298.20AC004448.3'pseudogene'12AELoss-4.253EU AB E2_Aa0
19328.11OSBPL9'protein_coding'835AEGain26.434EU ES ER1a33.33
20338.02CCDC144B'protein_coding'221AELoss-20.816EU AB IR CE I70.00
21377.89LYZ'protein_coding'14DEGain237.841EU LYZ0
22387.80DUT'protein_coding'211AEGain11.995EU AB ER1e66.67
23407.79CHCHD10'protein_coding'27AEGain31.283EU ER1a50.00
24417.76PICALM'protein_coding'523AEGain16.447EU ES ER18a83.33
25447.71NCOA4'protein_coding'516AEGain33.913EU ES E2a_E4a0.00
26477.66FOSB'protein_coding'14DELoss-202.272AB FOSB0
27517.47TBC1D4'protein_coding'221AELoss-10.7623EU AB CE E4a_E5a100.00
28527.43HIST1H2AC'protein_coding'35AELoss-14.151AB E3_Aa0
29537.43TOR1AIP1'protein_coding'415AELoss-19.773EU E2a_E3a100.00
30567.37TCTN1'protein_coding'827AELoss-3.8517EU ES AB CE E6_Da72.73
31587.30TAGLN'protein_coding'310DEGain57.387EU AB TAGLN50.00
32647.18AIF1'protein_coding'59AEGain265.0010EU AB ER3a87.50
33657.14CD52'protein_coding'12AELoss-20.382EU AB E2_Aa0
34667.12C11orf10'protein_coding'14AELoss-13.323EU E3a_E4a100.00
35687.11NUTF2'protein_coding'15AEGain22.262EU CE I4_AR20
36697.07RPS27'protein_coding'37AELoss-54.633EU E3c_E4a0.00
37707.03TK1'protein_coding'210AEGain3.183EU AB E5_Da100.00
38736.90MTMR10'protein_coding'218AEGain15.323AB E17_Aa0
39756.88SIRPB1'protein_coding'819AEGain9.425EU AB E4_Da100.00
40776.84RPS24'protein_coding'39AEGain19.222ES ENST00000360830100.00
41806.80CCDC152'protein_coding'19AELoss-2.1912EU E6a_E7a81.82
42826.78HLA-DOA'protein_coding'28AELoss-11.101ES E3b_E5a0
43846.76DDX17'protein_coding'519AEGain50.168EU AB IR ER11b100.00
44866.75PTS'protein_coding'16AEGain12.333EU ES E2a_E4a50.00
45876.74AUP1'protein_coding'217AEGain38.608EU ES AB E4a_E5a100.00
46926.63AC004053.1'protein_coding'432AELoss-16.003EU AB ER2b0.00
47946.62SNRPA1'protein_coding'211AEGain12.564EU AB CE E7_Da0
48956.56ITGB2'protein_coding'827AEGain53.798EU ES AB CE ER1b75.00
49966.56TET1'protein_coding'112AELoss-48.001CE I3_AR10
50976.55FCER1G'protein_coding'27DEGain37.787EU FCER1G66.67
51986.54HNRNPA1'protein_coding'213AELoss-80.253EU E3a_E4a50.00
52996.53ASMTL'protein_coding'215AEGain11.824EU AB E13_Aa100.00
531006.53SERPINF1'protein_coding'18DEGain92.541AB SERPINF10
541016.51PGAM1'protein_coding'14AELoss-41.814EU ER3a66.67
551026.50AC004098.1'pseudogene'12AELoss-12.161AB E1_Da0
561046.45DIDO1'protein_coding'927AELoss-16.353EU AB E2a_E3a0.00
571066.42C10orf32'protein_coding'522AELoss-8.715EU AB E5a_E6a66.67
581076.42DCN'protein_coding'610DEGain85.894EU ES DCN66.67
591086.41IL18'protein_coding'16DEGain85.261EU IL180
601096.41AAAS'protein_coding'217AEGain13.823AB IR E2_Aa0
611116.40NCF1C'protein_coding'213AELoss-9.982EU ER1b100.00
621126.38ARHGEF1'protein_coding'639AEGain41.157EU ES AB E15_Db25.00
631156.35NCK1'protein_coding'14AEGain17.451CE I2_AR20
641176.32C9orf86'protein_coding'625AEGain14.062AB E1_Ab0
651186.31TGIF2'protein_coding'24AEGain10.403EU AB E1_Da0.00
661206.29RPL15'protein_coding'26AELoss-15.973EU AB ER2a0.00
671236.26PPARA'protein_coding'517AELoss-5.197EU AB E6_Da66.67
681246.26C14orf156'protein_coding'14AELoss-10.344EU E3a_E4a33.33
691256.25HLA-A'protein_coding'723AEGain423.9812EU ES AB E8b_E9a37.50
701296.19AB019439.1'IG_V_gene'12DELoss-72.821EU AB019439.10
711306.18COBLL1'protein_coding'521AELoss-8.735EU ES E9a_E10a75.00
721316.16BCL2A1'protein_coding'23AEGain9.423EU E2a_E3a100.00
731336.13AL645929.4'protein_coding'17AELoss-12.748EU ES AB E2a_E3a33.33
741376.05IL32'protein_coding'613DEGain28.625EU AB IL3266.67
751386.03IGHA2'IG_C_gene'25AELoss-938.447EU AB CE E3a_E4a33.33
761406.02NCF1'protein_coding'111AEGain15.205EU AB E6_Da0.00
771416.02CLK1'protein_coding'418AEGain12.5911EU ES AB IR E4_Da0.00
781426.01IGHM'IG_C_gene'26DELoss-64.573EU AB IGHM0.00
791436.00LGALS3'protein_coding'28DEGain64.061ES LGALS30
801445.98AC004833.1'pseudogene'13AELoss-14.321AB E2_Da0
811475.96PMPCA'protein_coding'214AEGain12.364EU AB E6_Da0.00
821495.95PSMA8'protein_coding'29AELoss-11.702EU CE I4_AR10
831505.94CBWD1'protein_coding'827AELoss-15.394EU E8a_E9a0.00
841515.93HN1'protein_coding'512AELoss-15.322EU AB ER5a0
851535.91HS2ST1'protein_coding'415AEGain7.443EU ER10a100.00
861545.90GZMK'protein_coding'15DEGain59.892EU GZMK0.00
871595.85IL4I1'protein_coding'314AELoss-2.543EU AB E1_Ab0
881605.85AC140077.17'protein_coding'110DEGain57.572EU AC140077.170.00
891635.83PARP15'protein_coding'213DEGain25.3410EU ES AB IR CE PARP1540.00
901645.83BOLA1'protein_coding'38AELoss-12.893EU AB E2_Aa0
911655.82RGS2'protein_coding'15DELoss-56.362EU RGS2100.00
921665.81BPNT1'protein_coding'315AEGain12.176EU ES AB E9c_E9d25.00
931685.80DMAP1'protein_coding'518AEGain10.353EU ES AB E5_Da0.00
941695.79AC005000.2'pseudogene'12AELoss-39.092IR I10
951745.76CDK5RAP1'protein_coding'416AEGain11.174EU AB CE E11_Aa0
961785.74SND1'protein_coding'124AEGain8.821AB E15_Aa0
971815.73SNX22'protein_coding'28AEGain12.375EU AB CE E3_Da0.00
981825.71DNAJC5B'protein_coding'16DEGain52.341EU DNAJC5B0
991835.70BCL2'protein_coding'24DEGain52.1115EU AB CE BCL266.67
1001845.70AFF1'protein_coding'431AELoss-4.685EU AB ER4b0.00
1011875.68HIST1H3H'protein_coding'23AELoss-30.983AB CE I1_AR10
1021895.67CDC42SE1'protein_coding'26AEGain32.384EU AB E3_Da0
1031905.67MARCH8'protein_coding'410AEGain9.598EU AB CE E7_Da0
1041955.64ZNF85'protein_coding'26AELoss-16.523EU E3a_E4a100.00
1051965.64REC8'protein_coding'120AEGain9.343EU AB E12_Da0
1061985.63WSB1'protein_coding'29AELoss-9.214ES AB IR E1a_E3a0
1071995.63PSMC6'protein_coding'114AELoss-9.055EU E4a_E5a50.00
1082005.62C11orf79'protein_coding'14AELoss-9.322EU ES E2a_E4a100.00
1092015.62MRPS28'protein_coding'13AEGain8.392EU ES E1a_E3a100.00
1102025.61RP11-488L18.4'unprocessed_pseudogene'14AELoss-3.726EU AB CE I1_SR10.00
1112035.61C18orf1'protein_coding'59AELoss-7.3410EU ES AB CE I5_AR160.00
1122055.60RPL38'protein_coding'15AELoss-11.132EU E4a_E5a100.00
1132065.60AFG3L2'protein_coding'117AEGain8.142EU E1a_E2a100.00
1142075.59BTNL9'protein_coding'420DEGain48.3322EU ES AB IR BTNL963.64
1152085.59ICAM2'protein_coding'15AEGain17.495EU AB CE E2_Aa100.00
1162115.58PSPH'protein_coding'312AEGain51.951ES ENST000003662330
1172125.58MTMR1'protein_coding'321AELoss-9.791EU E2a_E3a0
1182155.56ATP5O'protein_coding'17AEGain16.523EU ES E3a_E6a100.00
1192165.56HNRNPH3'protein_coding'212AELoss-11.312EU ES E2a_E5a0.00
1202185.55SHC1'protein_coding'720AEGain23.834EU ES AB E2_Aa0.00
1212205.53EXOSC8'protein_coding'315AEGain7.945EU AB E4_Da100.00
1222215.53DDT'protein_coding'511AEGain7.533EU AB E7_Aa0
1232225.53HMGB1'protein_coding'718AEGain7.983EU ES ENST000003398720.00
1242235.53AC010422.7'protein_coding'19AEGain11.7913EU AB CE E3_Aa0
1252245.53ACSL5'protein_coding'523AEGain8.211ES E21a_E23a0
1262255.51IFITM3'protein_coding'27DEGain45.714EU AB IFITM30.00
1272265.51TBC1D22B'protein_coding'214AEGain12.413EU E1a_E2a100.00
1282295.50SEPT11'protein_coding'110AEGain8.181AB E9_Da0
1292305.50CAMLG'protein_coding'14AELoss-10.894EU ES AB E3_Aa100.00
1302335.49APBB2'protein_coding'221AEGain8.543EU ES ER9a50.00
1312345.49C20orf52'protein_coding'511AELoss-15.235EU AB E2_Da66.67
1322365.48RPS21'protein_coding'515AELoss-8.279EU ER3l62.50
1332385.47SAR1A'protein_coding'619AELoss-8.583EU ES E1a_E4b0.00
1342415.46LSM12'protein_coding'15AELoss-17.793EU ER3a100.00
1352425.46PRKDC'protein_coding'287AEGain8.711ES ENST000003383680
1362465.45GRINA'protein_coding'28AEGain50.125EU AB ER1a66.67
1372485.43FNBP1'protein_coding'525AELoss-7.298EU ES AB CE E12a_E15b80.00
1382495.42CSGALNACT2'protein_coding'29AEGain8.731AB E6_Aa0
1392505.42NAPSB'protein_coding'19AEGain15.874EU CE I5_AR3100.00
1402525.41CAPG'protein_coding'520DEGain42.455EU ES AB CAPG33.33
1412535.40MYH11'protein_coding'443AEGain7.947EU AB E28_Aa0.00
1422555.38ACYP1'protein_coding'24AEGain11.325EU AB CE E4_Aa50.00
1432565.38AB019438.1'IG_V_gene'12DELoss-41.731EU AB019438.10
1442595.37PARP2'protein_coding'116AEGain8.933EU ES AB E2a_E3a0.00
1452605.36ENTPD1'protein_coding'414AELoss-7.652EU CE I1_AR10
1462615.36NDUFB8'protein_coding'38AEGain11.332AB E5_Aa0
1472635.35NR4A1'protein_coding'615DELoss-40.888EU ES AB NR4A10.00
1482645.34RPL27A'protein_coding'15AELoss-9.092EU E1a_E2a0.00
1492735.30AC007000.2'protein_coding'18AELoss-7.522EU AB E2_Aa0
1502765.29JMJD3'protein_coding'122AEGain5.841EU ER1a0
1512785.28SH3TC1'protein_coding'322AELoss-27.752EU CE I13_AR10
1522795.28BX537114.2'protein_coding'14AEGain6.651ES E1a_E3a0
1532825.27ZNF165'protein_coding'27AEGain7.291EU E1a_E2a0
1542845.27MAML3'protein_coding'310AEGain7.051AB E3_Aa0
1552855.27PLEKHK1'protein_coding'417AELoss-11.6111EU AB ER4a100.00
1562865.27FCRLA'protein_coding'1011AEGain9.954ES E2a_E4a33.33
1572885.26ITGB7'protein_coding'216AEGain6.308EU AB IR E5_Da100.00
1582895.26NFIC'protein_coding'514AELoss-5.351CE I6_AR10
1592905.23HTR3A'protein_coding'310AELoss-7.444EU CE I1_AR1100.00
1602925.22SYNE2'protein_coding'7123AEGain10.4418EU AB CE E116_Aa0.00
1612955.21RABGAP1L'protein_coding'1554AEGain8.297EU AB CE E26a_E27a50.00
1622965.21ZDHHC14'protein_coding'210AELoss-2.762EU I1_SR180
1632985.19C8orf80'protein_coding'120AEGain3.043EU AB E20_Aa0.00
1642995.19PPP1R12A'protein_coding'424AEGain11.764EU ES ENST00000312727100.00
1653005.19AB019438.1'IG_V_gene'12DELoss-36.451EU AB019438.10
1663015.19EZH2'protein_coding'221AEGain7.162EU AB E12_Aa0
1673035.17NUDT4'protein_coding'15AELoss-18.313EU E3a_E4a100.00
1683075.16ZNF783'protein_coding'114AELoss-2.4612EU AB CE I5_AR242.86
1693095.15IGLV2-14'IG_V_gene'12DELoss-35.591EU IGLV2-140
1703105.15RECK'protein_coding'222AELoss-6.126EU CE ENST0000037796425.00
1713115.15TELO2'protein_coding'121AEGain10.601AB E18_Aa0
1723125.15ZC3H12D'protein_coding'311AEGain7.861AB E7_Aa0
1733135.14MADD'protein_coding'1243AEGain8.982EU AB E36_Da0
1743145.14XYLT1'protein_coding'112AEGain6.785AB CE E9_Aa0
1753155.13TOMM70A'protein_coding'112AEGain9.451AB E12_Aa0
1763185.12D87021.1'IG_V_gene'12DELoss-34.761EU D87021.10
1773205.12LIMA1'protein_coding'212AEGain14.684EU AB ER3a100.00
1783215.11BST2'protein_coding'15AELoss-5.352EU ES E1a_E3a100.00
1793225.11SELPLG'protein_coding'25DEGain17.012EU SELPLG100.00
1803235.11VDAC2'protein_coding'416AELoss-21.453EU AB E5a_E6a0.00
1813255.11KIAA1586'protein_coding'14AELoss-7.132EU E1a_E2a0.00
1823265.11NPHP3'protein_coding'857AELoss-3.8910EU AB I30_SR30.00
1833305.10KIAA1731'protein_coding'230AEGain7.393EU E28a_E29a100.00
1843315.10FANCA'protein_coding'346AEGain3.968EU ES AB E41_Da25.00
1853335.08RAP1B'protein_coding'210AELoss-31.082EU E6a_E7a100.00
1863345.08NFATC2IP'protein_coding'18AEGain9.932AB CE I3_AR20
1873355.08WDR32'protein_coding'39AELoss-8.691AB E6_Da0
1883375.07WBSCR1'protein_coding'27AELoss-21.067EU ES E2a_E3a66.67
1893385.06SH2D1A'protein_coding'410DEGain33.383EU ES AB SH2D1A0.00
1903405.05TMSL3'protein_coding'23AELoss-6.492EU AB ER1b0
1913425.04FOS'protein_coding'14DELoss-32.936EU AB IR FOS0.00
1923455.03GTF2H2B'protein_coding'117AELoss-9.813EU ER5a0.00
1933465.03WAS'protein_coding'112AELoss-7.181ES E2a_E4a0
1943475.02CD1C'protein_coding'26AEGain9.678ES AB IR E5_Da0
1953495.01HIST1H2BD'protein_coding'23AELoss-8.033EU AB E1_Db0.00
1963535.00MS4A7'protein_coding'27AELoss-7.185EU AB ER3a50.00
1973545.00TAF1D'protein_coding'217AEGain9.2211EU AB E12_Db0.00
1983554.99HNRNPH2'protein_coding'512AEGain31.355EU ES E3a_E4b75.00
1993564.99SPTBN1'protein_coding'338AEGain11.924EU ES ER2a66.67
2003574.99AL662782.3'protein_coding'17AELoss-2.712EU E4a_E5a100.00
2013584.99CENPO'protein_coding'311AEGain6.2411EU ES AB E8_Da85.71
2023624.97AB019440.1'IG_V_gene'12DELoss-31.251EU AB019440.10
2033634.97JMJD2C'protein_coding'325AELoss-6.543CE I17_AR50
2043644.96PPP1R15A'protein_coding'13DELoss-31.101EU PPP1R15A0
2053654.96DYNLT3'protein_coding'310AELoss-4.782EU E5a_E6a100.00
2063674.96IGHG3'IG_C_gene'610DELoss-31.035EU AB CE IGHG350.00
2073704.95GIMAP7'protein_coding'12DEGain30.921EU GIMAP70
2083714.94ADD1'protein_coding'624AELoss-6.371EU E18a_E19a0
2093724.94DLD'protein_coding'114AELoss-8.893EU ES E3a_E5a50.00
2103744.93SYNGR3'protein_coding'26AEGain6.361EU E1a_E2a0
2113754.93WDR4'protein_coding'213AEGain7.092EU AB E12_Aa0
2123764.93SFRS2'protein_coding'37AEGain7.221AB E2_Da0
2133774.93CLCC1'protein_coding'921AELoss-6.602EU AB E13_Db0
2143804.92TRIM5'protein_coding'822AEGain12.073EU IR E4b_E5a100.00
2153814.92CCNE2'protein_coding'213AEGain2.366EU AB E12_Da75.00
2163854.91SIDT1'protein_coding'227AELoss-7.137EU ES CE I24_AR120.00
2173864.91ANP32A'protein_coding'313AELoss-27.313EU ER4a0.00
2183884.90INTS1'protein_coding'456AEGain6.573EU AB CE I43_AR10
2193924.89S100A6'protein_coding'27DEGain29.573EU ES S100A60.00
2203944.88PVRIG'protein_coding'16AEGain17.673EU AB IR E1_Da0
2213954.88CD4'protein_coding'110DEGain29.462EU CD40.00
2223974.87U66059.1'IG_V_gene'12DEGain29.331EU U66059.10
2233984.87ARMC8'protein_coding'428AELoss-7.711ES E1a_E4a0
2243994.87MRRF'protein_coding'1022AEGain11.128EU AB E5_Db60.00
2254014.86ARHGAP9'protein_coding'426AEGain19.013AB CE E10_Aa0
2264034.86MTG1'protein_coding'111AEGain9.454AB CE E7_Aa0
2274044.86RPL21'protein_coding'410AELoss-6.864EU E4a_E5a66.67
2284054.85TTC17'protein_coding'226AEGain15.8318EU AB IR E20_Aa90.91
2294064.85AC096767.3'IG_V_gene'12DELoss-28.881EU AC096767.30
2304084.85C17orf62'protein_coding'213AELoss-6.535ES AB CE E1a_E5a100.00
2314114.84WDR6'protein_coding'310AEGain31.074AB IR E3_Aa0
2324124.84RP11-764K9.4'unprocessed_pseudogene'19AEGain6.721AB E9_Aa0
2334134.83FAM149B1'protein_coding'217AEGain8.641AB E11_Aa0
2344154.83SQRDL'protein_coding'110DEGain28.483EU ES SQRDL50.00
2354164.83COX6B1'protein_coding'26AELoss-5.794EU E4a_E5a100.00
2364184.82DENND1B'protein_coding'419AEGain6.631AB E4_Aa0
2374194.82TMEM161A'protein_coding'112AEGain5.732EU AB E8_Da0
2384204.82TOMM40'protein_coding'213AEGain5.183EU E1a_E2a100.00
2394214.82SON'protein_coding'822AEGain16.616EU IR ER11a33.33
2404224.82SGK1'protein_coding'418AEGain8.255EU ES E2a_E3a0.00
2414234.81FAM116B'protein_coding'119AEGain5.081EU E3a_E4a0
2424244.81GTF3C5'protein_coding'622AEGain7.764EU AB CE E12_Aa0
2434254.81CD2'protein_coding'27DEGain28.041EU CD20
2444264.80NDUFB6'protein_coding'24AELoss-7.921ES E2a_E4a0
2454274.80ACTA2'protein_coding'19DEGain27.934EU ACTA233.33
2464294.80PFKFB3'protein_coding'929AELoss-28.313EU AB ER2d0.00
2474304.80CSNK1E'protein_coding'726AEGain7.802EU AB E18_Aa0
2484334.79CUGBP1'protein_coding'517AELoss-24.981EU E14a_E15a0
2494394.77FAM184A'protein_coding'725AEGain6.392EU ES E10a_E12a0.00
2504404.77ZNF827'protein_coding'319AEGain5.752EU E17a_E18a100.00
2514434.76C7orf28B'protein_coding'115AELoss-19.522EU ER6a0.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1412.23IGHV4-31'IG_C_gene'27AEGain72.952EU E4a_E5a0.00
2511.43HLA-DRB5'protein_coding'27AEGain599.094EU ES E3a_E4a66.67
3610.42AC022210.8'pseudogene'13AEGain74.012ES AB E1_Da0
4810.08SPARC'protein_coding'110DEGain268.342EU SPARC100.00
5109.60TMEM77'protein_coding'211AEGain163.603EU E1a_E2a100.00
6119.18SEPP1'protein_coding'14DEGain580.000N/ASEPP1N/A
7139.01CXCL9'protein_coding'14DEGain514.730N/ACXCL9N/A
8148.95APOE'protein_coding'14DEGain495.290N/AAPOEN/A
9168.74RPL9'protein_coding'18AEGain3.5414EU AB IR E6a_E7a77.78
10188.65CCL19'protein_coding'26DEGain401.030N/ACCL19N/A
11208.61IGFBP7'protein_coding'15DEGain389.980N/AIGFBP7N/A
12218.53FUBP1'protein_coding'526AEGain39.395EU AB IR CE E20_Aa0
13238.51PTPRC'protein_coding'1143AEGain48.005EU ES E4a_E9a75.00
14248.47CCL21'protein_coding'26DEGain355.510N/ACCL21N/A
15258.40APOC1'protein_coding'15DEGain338.170N/AAPOC1N/A
16268.38LUM'protein_coding'13DEGain334.000N/ALUMN/A
17278.34SC-9C5.12'protein_coding'35AEGain14.4112EU AB IR E3_Aa0
18288.22PTGDS'protein_coding'310DEGain297.730N/APTGDSN/A
19318.16C3'protein_coding'141DEGain285.800N/AC3N/A
20328.11OSBPL9'protein_coding'835AEGain26.434EU ES ER1a33.33
21348.02MMP9'protein_coding'113DEGain259.050N/AMMP9N/A
22357.97BGN'protein_coding'211DEGain249.910N/ABGNN/A
23367.92IGHE'IG_C_gene'211DEGain241.860N/AIGHEN/A
24377.89LYZ'protein_coding'14DEGain237.841EU LYZ0
25387.80DUT'protein_coding'211AEGain11.995EU AB ER1e66.67
26407.79CHCHD10'protein_coding'27AEGain31.283EU ER1a50.00
27417.76PICALM'protein_coding'523AEGain16.447EU ES ER18a83.33
28427.76PLA2G2D'protein_coding'14DEGain217.150N/APLA2G2DN/A
29437.75ENPP2'protein_coding'226DEGain215.080N/AENPP2N/A
30447.71NCOA4'protein_coding'516AEGain33.913EU ES E2a_E4a0.00
31457.69COL1A1'protein_coding'151DEGain205.850N/ACOL1A1N/A
32467.68GPNMB'protein_coding'314DEGain205.730N/AGPNMBN/A
33487.56FN1'protein_coding'1050DEGain188.590N/AFN1N/A
34497.51C1QB'protein_coding'13DEGain182.060N/AC1QBN/A
35507.47COL1A2'protein_coding'254DEGain177.010N/ACOL1A2N/A
36547.41COL3A1'protein_coding'254DEGain170.100N/ACOL3A1N/A
37557.40SLC40A1'protein_coding'18DEGain169.230N/ASLC40A1N/A
38577.35A2M'protein_coding'240DEGain162.880N/AA2MN/A
39587.30TAGLN'protein_coding'310DEGain57.387EU AB TAGLN50.00
40597.23SERPING1'protein_coding'617DEGain150.410N/ASERPING1N/A
41607.23CCL18'protein_coding'13DEGain150.210N/ACCL18N/A
42617.23TIMP1'protein_coding'411DEGain149.600N/ATIMP1N/A
43627.22TMEM176B'protein_coding'29DEGain149.120N/ATMEM176BN/A
44637.20TIMP3'protein_coding'28DEGain146.930N/ATIMP3N/A
45647.18AIF1'protein_coding'59AEGain265.0010EU AB ER3a87.50
46677.11ADAMDEC1'protein_coding'215DEGain138.430N/AADAMDEC1N/A
47687.11NUTF2'protein_coding'15AEGain22.262EU CE I4_AR20
48707.03TK1'protein_coding'210AEGain3.183EU AB E5_Da100.00
49716.94C1QA'protein_coding'311DEGain122.970N/AC1QAN/A
50726.94TYROBP'protein_coding'15DEGain122.450N/ATYROBPN/A
51736.90MTMR10'protein_coding'218AEGain15.323AB E17_Aa0
52746.89C1QC'protein_coding'37DEGain118.600N/AC1QCN/A
53756.88SIRPB1'protein_coding'819AEGain9.425EU AB E4_Da100.00
54766.86CCL2'protein_coding'13DEGain116.310N/ACCL2N/A
55776.84RPS24'protein_coding'39AEGain19.222ES ENST00000360830100.00
56786.81CTSL1'protein_coding'414DEGain112.310N/ACTSL1N/A
57796.81TMEM176A'protein_coding'17DEGain111.940N/ATMEM176AN/A
58816.79POSTN'protein_coding'524DEGain110.840N/APOSTNN/A
59836.77FSTL1'protein_coding'111DEGain109.470N/AFSTL1N/A
60846.76DDX17'protein_coding'519AEGain50.168EU AB IR ER11b100.00
61866.75PTS'protein_coding'16AEGain12.333EU ES E2a_E4a50.00
62876.74AUP1'protein_coding'217AEGain38.608EU ES AB E4a_E5a100.00
63886.73C1S'protein_coding'634DEGain105.990N/AC1SN/A
64896.69RARRES1'protein_coding'16DEGain103.130N/ARARRES1N/A
65906.64MS4A6A'protein_coding'17DEGain99.670N/AMS4A6AN/A
66936.63SPARCL1'protein_coding'111DEGain98.740N/ASPARCL1N/A
67946.62SNRPA1'protein_coding'211AEGain12.564EU AB CE E7_Da0
68956.56ITGB2'protein_coding'827AEGain53.798EU ES AB CE ER1b75.00
69976.55FCER1G'protein_coding'27DEGain37.787EU FCER1G66.67
70996.53ASMTL'protein_coding'215AEGain11.824EU AB E13_Aa100.00
711006.53SERPINF1'protein_coding'18DEGain92.541AB SERPINF10
721056.44CST3'protein_coding'38DEGain87.110N/ACST3N/A
731076.42DCN'protein_coding'610DEGain85.894EU ES DCN66.67
741086.41IL18'protein_coding'16DEGain85.261EU IL180
751096.41AAAS'protein_coding'217AEGain13.823AB IR E2_Aa0
761106.41COL6A1'protein_coding'135DEGain84.780N/ACOL6A1N/A
771126.38ARHGEF1'protein_coding'639AEGain41.157EU ES AB E15_Db25.00
781136.38THY1'protein_coding'14DEGain83.000N/ATHY1N/A
791146.36CD14'protein_coding'24DEGain81.860N/ACD14N/A
801156.35NCK1'protein_coding'14AEGain17.451CE I2_AR20
811166.34CSF1R'protein_coding'224DEGain80.960N/ACSF1RN/A
821176.32C9orf86'protein_coding'625AEGain14.062AB E1_Ab0
831186.31TGIF2'protein_coding'24AEGain10.403EU AB E1_Da0.00
841216.27SLCO2B1'protein_coding'214DEGain77.300N/ASLCO2B1N/A
851226.26RASSF4'protein_coding'515DEGain76.890N/ARASSF4N/A
861256.25HLA-A'protein_coding'723AEGain423.9812EU ES AB E8b_E9a37.50
871286.20PLA2G7'protein_coding'112DEGain73.340N/APLA2G7N/A
881316.16BCL2A1'protein_coding'23AEGain9.423EU E2a_E3a100.00
891326.14COL6A2'protein_coding'533DEGain70.470N/ACOL6A2N/A
901346.09RARRES2'protein_coding'16DEGain68.280N/ARARRES2N/A
911356.08OR2I1P'unprocessed_pseudogene'11DEGain67.620N/AOR2I1PN/A
921376.05IL32'protein_coding'613DEGain28.625EU AB IL3266.67
931406.02NCF1'protein_coding'111AEGain15.205EU AB E6_Da0.00
941416.02CLK1'protein_coding'418AEGain12.5911EU ES AB IR E4_Da0.00
951436.00LGALS3'protein_coding'28DEGain64.061ES LGALS30
961455.98ITGAX'protein_coding'230DEGain63.110N/AITGAXN/A
971475.96PMPCA'protein_coding'214AEGain12.364EU AB E6_Da0.00
981485.96C7'protein_coding'118DEGain62.090N/AC7N/A
991535.91HS2ST1'protein_coding'415AEGain7.443EU ER10a100.00
1001545.90GZMK'protein_coding'15DEGain59.892EU GZMK0.00
1011555.89FOXP3'protein_coding'315DEGain59.350N/AFOXP3N/A
1021565.88AQP1'protein_coding'410DEGain58.840N/AAQP1N/A
1031585.87TMEM119'protein_coding'25DEGain58.500N/ATMEM119N/A
1041605.85AC140077.17'protein_coding'110DEGain57.572EU AC140077.170.00
1051625.83FABP4'protein_coding'14DEGain57.060N/AFABP4N/A
1061635.83PARP15'protein_coding'213DEGain25.3410EU ES AB IR CE PARP1540.00
1071665.81BPNT1'protein_coding'315AEGain12.176EU ES AB E9c_E9d25.00
1081675.81COL4A1'protein_coding'467DEGain56.070N/ACOL4A1N/A
1091685.80DMAP1'protein_coding'518AEGain10.353EU ES AB E5_Da0.00
1101705.79CXCL10'protein_coding'25DEGain55.430N/ACXCL10N/A
1111715.79COL4A2'protein_coding'461DEGain55.420N/ACOL4A2N/A
1121725.77MMP2'protein_coding'113DEGain54.390N/AMMP2N/A
1131745.76CDK5RAP1'protein_coding'416AEGain11.174EU AB CE E11_Aa0
1141755.75TCN2'protein_coding'314DEGain53.780N/ATCN2N/A
1151765.75EFEMP1'protein_coding'416DEGain53.650N/AEFEMP1N/A
1161785.74SND1'protein_coding'124AEGain8.821AB E15_Aa0
1171795.74TIMP2'protein_coding'15DEGain53.320N/ATIMP2N/A
1181805.73MGP'protein_coding'14DEGain53.180N/AMGPN/A
1191815.73SNX22'protein_coding'28AEGain12.375EU AB CE E3_Da0.00
1201825.71DNAJC5B'protein_coding'16DEGain52.341EU DNAJC5B0
1211835.70BCL2'protein_coding'24DEGain52.1115EU AB CE BCL266.67
1221885.68VCAM1'protein_coding'414DEGain51.280N/AVCAM1N/A
1231895.67CDC42SE1'protein_coding'26AEGain32.384EU AB E3_Da0
1241905.67MARCH8'protein_coding'410AEGain9.598EU AB CE E7_Da0
1251915.66GIMAP4'protein_coding'13DEGain50.630N/AGIMAP4N/A
1261935.66CLIC2'protein_coding'27DEGain50.540N/ACLIC2N/A
1271945.64LILRB4'protein_coding'522DEGain50.020N/ALILRB4N/A
1281965.64REC8'protein_coding'120AEGain9.343EU AB E12_Da0
1291975.63CYP27A1'protein_coding'19DEGain49.590N/ACYP27A1N/A
1302015.62MRPS28'protein_coding'13AEGain8.392EU ES E1a_E3a100.00
1312065.60AFG3L2'protein_coding'117AEGain8.142EU E1a_E2a100.00
1322075.59BTNL9'protein_coding'420DEGain48.3322EU ES AB IR BTNL963.64
1332085.59ICAM2'protein_coding'15AEGain17.495EU AB CE E2_Aa100.00
1342095.59MFAP4'protein_coding'28DEGain48.160N/AMFAP4N/A
1352105.59CTHRC1'protein_coding'27DEGain48.150N/ACTHRC1N/A
1362115.58PSPH'protein_coding'312AEGain51.951ES ENST000003662330
1372135.58MNDA'protein_coding'17DEGain47.680N/AMNDAN/A
1382145.57IL33'protein_coding'17DEGain47.550N/AIL33N/A
1392155.56ATP5O'protein_coding'17AEGain16.523EU ES E3a_E6a100.00
1402175.55NNMT'protein_coding'13DEGain46.930N/ANNMTN/A
1412185.55SHC1'protein_coding'720AEGain23.834EU ES AB E2_Aa0.00
1422205.53EXOSC8'protein_coding'315AEGain7.945EU AB E4_Da100.00
1432215.53DDT'protein_coding'511AEGain7.533EU AB E7_Aa0
1442225.53HMGB1'protein_coding'718AEGain7.983EU ES ENST000003398720.00
1452235.53AC010422.7'protein_coding'19AEGain11.7913EU AB CE E3_Aa0
1462245.53ACSL5'protein_coding'523AEGain8.211ES E21a_E23a0
1472255.51IFITM3'protein_coding'27DEGain45.714EU AB IFITM30.00
1482265.51TBC1D22B'protein_coding'214AEGain12.413EU E1a_E2a100.00
1492285.51TNC'protein_coding'528DEGain45.460N/ATNCN/A
1502295.50SEPT11'protein_coding'110AEGain8.181AB E9_Da0
1512315.50CSTA'protein_coding'13DEGain45.110N/ACSTAN/A
1522335.49APBB2'protein_coding'221AEGain8.543EU ES ER9a50.00
1532355.49PLAU'protein_coding'313DEGain44.810N/APLAUN/A
1542375.47CALD1'protein_coding'417DEGain44.450N/ACALD1N/A
1552395.47TIMD4'protein_coding'313DEGain44.310N/ATIMD4N/A
1562405.47DAB2'protein_coding'215DEGain44.260N/ADAB2N/A
1572425.46PRKDC'protein_coding'287AEGain8.711ES ENST000003383680
1582435.46ABI3BP'protein_coding'567DEGain43.920N/AABI3BPN/A
1592445.46TNFAIP2'protein_coding'111DEGain43.890N/ATNFAIP2N/A
1602455.45PLVAP'protein_coding'16DEGain43.860N/APLVAPN/A
1612465.45GRINA'protein_coding'28AEGain50.125EU AB ER1a66.67
1622475.45C2'protein_coding'621DEGain43.590N/AC2N/A
1632495.42CSGALNACT2'protein_coding'29AEGain8.731AB E6_Aa0
1642505.42NAPSB'protein_coding'19AEGain15.874EU CE I5_AR3100.00
1652515.41CCDC80'protein_coding'18DEGain42.610N/ACCDC80N/A
1662525.41CAPG'protein_coding'520DEGain42.455EU ES AB CAPG33.33
1672535.40MYH11'protein_coding'443AEGain7.947EU AB E28_Aa0.00
1682545.39CXCR6'protein_coding'12DEGain41.840N/ACXCR6N/A
1692555.38ACYP1'protein_coding'24AEGain11.325EU AB CE E4_Aa50.00
1702575.37MYL9'protein_coding'24DEGain41.350N/AMYL9N/A
1712595.37PARP2'protein_coding'116AEGain8.933EU ES AB E2a_E3a0.00
1722615.36NDUFB8'protein_coding'38AEGain11.332AB E5_Aa0
1732655.34CYFIP1'protein_coding'131DEGain40.390N/ACYFIP1N/A
1742675.32SERPINE1'protein_coding'19DEGain39.970N/ASERPINE1N/A
1752695.31GIMAP5'protein_coding'13DEGain39.760N/AGIMAP5N/A
1762705.31CXCL14'protein_coding'14DEGain39.690N/ACXCL14N/A
1772725.30TNFRSF1A'protein_coding'110DEGain39.500N/ATNFRSF1AN/A
1782745.30GZMA'protein_coding'15DEGain39.400N/AGZMAN/A
1792755.29COL6A3'protein_coding'850DEGain39.130N/ACOL6A3N/A
1802765.29JMJD3'protein_coding'122AEGain5.841EU ER1a0
1812775.28CYBRD1'protein_coding'36DEGain38.980N/ACYBRD1N/A
1822795.28BX537114.2'protein_coding'14AEGain6.651ES E1a_E3a0
1832805.27SFRP4'protein_coding'16DEGain38.720N/ASFRP4N/A
1842815.27IGFBP3'protein_coding'310DEGain38.710N/AIGFBP3N/A
1852825.27ZNF165'protein_coding'27AEGain7.291EU E1a_E2a0
1862845.27MAML3'protein_coding'310AEGain7.051AB E3_Aa0
1872865.27FCRLA'protein_coding'1011AEGain9.954ES E2a_E4a33.33
1882875.26SLAMF8'protein_coding'25DEGain38.450N/ASLAMF8N/A
1892885.26ITGB7'protein_coding'216AEGain6.308EU AB IR E5_Da100.00
1902915.23CNN3'protein_coding'29DEGain37.480N/ACNN3N/A
1912925.22SYNE2'protein_coding'7123AEGain10.4418EU AB CE E116_Aa0.00
1922935.22ATHL1'protein_coding'631DEGain37.200N/AATHL1N/A
1932945.21SDC3'protein_coding'39DEGain37.010N/ASDC3N/A
1942955.21RABGAP1L'protein_coding'1554AEGain8.297EU AB CE E26a_E27a50.00
1952975.20AC104692.1'pseudogene'12DEGain36.680N/AAC104692.1N/A
1962985.19C8orf80'protein_coding'120AEGain3.043EU AB E20_Aa0.00
1972995.19PPP1R12A'protein_coding'424AEGain11.764EU ES ENST00000312727100.00
1983015.19EZH2'protein_coding'221AEGain7.162EU AB E12_Aa0
1993045.17CXCL12'protein_coding'610DEGain35.970N/ACXCL12N/A
2003055.16CSF1'protein_coding'514DEGain35.870N/ACSF1N/A
2013065.16IGFBP5'protein_coding'14DEGain35.750N/AIGFBP5N/A
2023085.16ISLR'protein_coding'24DEGain35.650N/AISLRN/A
2033115.15TELO2'protein_coding'121AEGain10.601AB E18_Aa0
2043125.15ZC3H12D'protein_coding'311AEGain7.861AB E7_Aa0
2053135.14MADD'protein_coding'1243AEGain8.982EU AB E36_Da0
2063145.14XYLT1'protein_coding'112AEGain6.785AB CE E9_Aa0
2073155.13TOMM70A'protein_coding'112AEGain9.451AB E12_Aa0
2083165.12SOD3'protein_coding'12DEGain34.890N/ASOD3N/A
2093175.12IL13RA1'protein_coding'314DEGain34.770N/AIL13RA1N/A
2103195.12DPYSL3'protein_coding'215DEGain34.740N/ADPYSL3N/A
2113205.12LIMA1'protein_coding'212AEGain14.684EU AB ER3a100.00
2123225.11SELPLG'protein_coding'25DEGain17.012EU SELPLG100.00
2133245.11GABBR1'protein_coding'1034DEGain34.460N/AGABBR1N/A
2143275.10AOAH'protein_coding'121DEGain34.410N/AAOAHN/A
2153285.10CFH'protein_coding'425DEGain34.370N/ACFHN/A
2163295.10FPR3'protein_coding'12DEGain34.300N/AFPR3N/A
2173305.10KIAA1731'protein_coding'230AEGain7.393EU E28a_E29a100.00
2183315.10FANCA'protein_coding'346AEGain3.968EU ES AB E41_Da25.00
2193325.09RNF130'protein_coding'211DEGain34.010N/ARNF130N/A
2203345.08NFATC2IP'protein_coding'18AEGain9.932AB CE I3_AR20
2213365.07CMKLR1'protein_coding'26DEGain33.650N/ACMKLR1N/A
2223385.06SH2D1A'protein_coding'410DEGain33.383EU ES AB SH2D1A0.00
2233415.05DPT'protein_coding'14DEGain33.080N/ADPTN/A
2243445.03RGL1'protein_coding'323DEGain32.710N/ARGL1N/A
2253475.02CD1C'protein_coding'26AEGain9.678ES AB IR E5_Da0
2263485.02TMEM173'protein_coding'18DEGain32.400N/ATMEM173N/A
2273515.00RBP5'protein_coding'14DEGain32.070N/ARBP5N/A
2283545.00TAF1D'protein_coding'217AEGain9.2211EU AB E12_Db0.00
2293554.99HNRNPH2'protein_coding'512AEGain31.355EU ES E3a_E4b75.00
2303564.99SPTBN1'protein_coding'338AEGain11.924EU ES ER2a66.67
2313584.99CENPO'protein_coding'311AEGain6.2411EU ES AB E8_Da85.71
2323594.99IGFBP4'protein_coding'14DEGain31.730N/AIGFBP4N/A
2333604.98ANTXR1'protein_coding'628DEGain31.570N/AANTXR1N/A
2343664.96TSPAN7'protein_coding'210DEGain31.040N/ATSPAN7N/A
2353694.95CTSK'protein_coding'210DEGain30.950N/ACTSKN/A
2363704.95GIMAP7'protein_coding'12DEGain30.921EU GIMAP70
2373734.94SILV'protein_coding'112DEGain30.630N/ASILVN/A
2383744.93SYNGR3'protein_coding'26AEGain6.361EU E1a_E2a0
2393754.93WDR4'protein_coding'213AEGain7.092EU AB E12_Aa0
2403764.93SFRS2'protein_coding'37AEGain7.221AB E2_Da0
2413794.92GPX3'protein_coding'15DEGain30.350N/AGPX3N/A
2423804.92TRIM5'protein_coding'822AEGain12.073EU IR E4b_E5a100.00
2433814.92CCNE2'protein_coding'213AEGain2.366EU AB E12_Da75.00
2443824.91CETP'protein_coding'216DEGain30.110N/ACETPN/A
2453834.91RNASE1'protein_coding'34DEGain30.060N/ARNASE1N/A
2463844.91TGFBI'protein_coding'219DEGain30.060N/ATGFBIN/A
2473884.90INTS1'protein_coding'456AEGain6.573EU AB CE I43_AR10
2483894.90KCNIP2'protein_coding'1122DEGain29.830N/AKCNIP2N/A
2493914.90FMOD'protein_coding'13DEGain29.780N/AFMODN/A
2503924.89S100A6'protein_coding'27DEGain29.573EU ES S100A60.00
2513944.88PVRIG'protein_coding'16AEGain17.673EU AB IR E1_Da0


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1115.74HLA-DQB1'protein_coding'817AELoss-247.084EU ES E8a_E9a100.00
2215.49HLA-DRB1'protein_coding'16AELoss-930.841EU E2a_E3a0
3314.11IGHG4'IG_C_gene'29AELoss-49.308EU AB CE I4_AR150.00
4710.37BRE'protein_coding'721AELoss-184.0110EU AB CE I1_AR175.00
599.63HLA-B'protein_coding'521AELoss-40.9511EU ES ENST0000040662640.00
6129.10RPS4Y1'protein_coding'17DELoss-549.110N/ARPS4Y1N/A
7158.87TMBIM4'protein_coding'312AELoss-16.743EU AB E8_Da100.00
8178.70AHSA2'protein_coding'723AELoss-8.0713EU ES AB IR E11_Db50.00
9198.64D87015.2'miRNA'11DELoss-400.000N/AD87015.2N/A
10228.53EIF4E'protein_coding'29AELoss-71.145EU E5a_E6a75.00
11298.20AC004448.3'pseudogene'12AELoss-4.253EU AB E2_Aa0
12308.18IGHD'IG_C_gene'27DELoss-290.510N/AIGHDN/A
13338.02CCDC144B'protein_coding'221AELoss-20.816EU AB IR CE I70.00
14397.80AL122127.6'IG_J_gene'11DELoss-222.460N/AAL122127.6N/A
15477.66FOSB'protein_coding'14DELoss-202.272AB FOSB0
16517.47TBC1D4'protein_coding'221AELoss-10.7623EU AB CE E4a_E5a100.00
17527.43HIST1H2AC'protein_coding'35AELoss-14.151AB E3_Aa0
18537.43TOR1AIP1'protein_coding'415AELoss-19.773EU E2a_E3a100.00
19567.37TCTN1'protein_coding'827AELoss-3.8517EU ES AB CE E6_Da72.73
20657.14CD52'protein_coding'12AELoss-20.382EU AB E2_Aa0
21667.12C11orf10'protein_coding'14AELoss-13.323EU E3a_E4a100.00
22697.07RPS27'protein_coding'37AELoss-54.633EU E3c_E4a0.00
23806.80CCDC152'protein_coding'19AELoss-2.1912EU E6a_E7a81.82
24826.78HLA-DOA'protein_coding'28AELoss-11.101ES E3b_E5a0
25856.76IGHA1'IG_C_gene'13DELoss-108.150N/AIGHA1N/A
26916.63AB019438.1'IG_V_gene'12DELoss-99.190N/AAB019438.1N/A
27926.63AC004053.1'protein_coding'432AELoss-16.003EU AB ER2b0.00
28966.56TET1'protein_coding'112AELoss-48.001CE I3_AR10
29986.54HNRNPA1'protein_coding'213AELoss-80.253EU E3a_E4a50.00
301016.51PGAM1'protein_coding'14AELoss-41.814EU ER3a66.67
311026.50AC004098.1'pseudogene'12AELoss-12.161AB E1_Da0
321036.48IGLV3-21'IG_V_gene'12DELoss-89.570N/AIGLV3-21N/A
331046.45DIDO1'protein_coding'927AELoss-16.353EU AB E2a_E3a0.00
341066.42C10orf32'protein_coding'522AELoss-8.715EU AB E5a_E6a66.67
351116.40NCF1C'protein_coding'213AELoss-9.982EU ER1b100.00
361196.29AB019438.1'IG_V_gene'12DELoss-78.500N/AAB019438.1N/A
371206.29RPL15'protein_coding'26AELoss-15.973EU AB ER2a0.00
381236.26PPARA'protein_coding'517AELoss-5.197EU AB E6_Da66.67
391246.26C14orf156'protein_coding'14AELoss-10.344EU E3a_E4a33.33
401266.23EIF1AY'protein_coding'29DELoss-74.880N/AEIF1AYN/A
411276.21AB019439.1'IG_V_gene'12DELoss-73.790N/AAB019439.1N/A
421296.19AB019439.1'IG_V_gene'12DELoss-72.821EU AB019439.10
431306.18COBLL1'protein_coding'521AELoss-8.735EU ES E9a_E10a75.00
441336.13AL645929.4'protein_coding'17AELoss-12.748EU ES AB E2a_E3a33.33
451366.05D87024.1'miRNA'11DELoss-66.460N/AD87024.1N/A
461386.03IGHA2'IG_C_gene'25AELoss-938.447EU AB CE E3a_E4a33.33
471396.03AB019439.1'IG_V_gene'12DELoss-65.250N/AAB019439.1N/A
481426.01IGHM'IG_C_gene'26DELoss-64.573EU AB IGHM0.00
491445.98AC004833.1'pseudogene'13AELoss-14.321AB E2_Da0
501465.97DDX3Y'protein_coding'220DELoss-62.900N/ADDX3YN/A
511495.95PSMA8'protein_coding'29AELoss-11.702EU CE I4_AR10
521505.94CBWD1'protein_coding'827AELoss-15.394EU E8a_E9a0.00
531515.93HN1'protein_coding'512AELoss-15.322EU AB ER5a0
541525.92AC110080.2'IG_V_gene'12DELoss-60.350N/AAC110080.2N/A
551575.87AC116654.4'IG_V_gene'12DELoss-58.580N/AAC116654.4N/A
561595.85IL4I1'protein_coding'314AELoss-2.543EU AB E1_Ab0
571615.85AB019439.1'IG_V_gene'12DELoss-57.520N/AAB019439.1N/A
581645.83BOLA1'protein_coding'38AELoss-12.893EU AB E2_Aa0
591655.82RGS2'protein_coding'15DELoss-56.362EU RGS2100.00
601695.79AC005000.2'pseudogene'12AELoss-39.092IR I10
611735.76AB019439.1'IG_V_gene'12DELoss-54.200N/AAB019439.1N/A
621775.74AC096767.3'pseudogene'12DELoss-53.470N/AAC096767.3N/A
631845.70AFF1'protein_coding'431AELoss-4.685EU AB ER4b0.00
641855.70GSTM1'protein_coding'413DELoss-51.870N/AGSTM1N/A
651865.69CYorf15A'protein_coding'28DELoss-51.550N/ACYorf15AN/A
661875.68HIST1H3H'protein_coding'23AELoss-30.983AB CE I1_AR10
671925.66AC096767.3'IG_V_gene'12DELoss-50.570N/AAC096767.3N/A
681955.64ZNF85'protein_coding'26AELoss-16.523EU E3a_E4a100.00
691985.63WSB1'protein_coding'29AELoss-9.214ES AB IR E1a_E3a0
701995.63PSMC6'protein_coding'114AELoss-9.055EU E4a_E5a50.00
712005.62C11orf79'protein_coding'14AELoss-9.322EU ES E2a_E4a100.00
722025.61RP11-488L18.4'unprocessed_pseudogene'14AELoss-3.726EU AB CE I1_SR10.00
732035.61C18orf1'protein_coding'59AELoss-7.3410EU ES AB CE I5_AR160.00
742045.61AL122127.6'IG_J_gene'11DELoss-48.760N/AAL122127.6N/A
752055.60RPL38'protein_coding'15AELoss-11.132EU E4a_E5a100.00
762125.58MTMR1'protein_coding'321AELoss-9.791EU E2a_E3a0
772165.56HNRNPH3'protein_coding'212AELoss-11.312EU ES E2a_E5a0.00
782195.54AC116654.4'IG_V_gene'12DELoss-46.410N/AAC116654.4N/A
792275.51AB019440.1'IG_V_gene'12DELoss-45.550N/AAB019440.1N/A
802305.50CAMLG'protein_coding'14AELoss-10.894EU ES AB E3_Aa100.00
812325.49IGKV1-5'IG_V_gene'12DELoss-45.090N/AIGKV1-5N/A
822345.49C20orf52'protein_coding'511AELoss-15.235EU AB E2_Da66.67
832365.48RPS21'protein_coding'515AELoss-8.279EU ER3l62.50
842385.47SAR1A'protein_coding'619AELoss-8.583EU ES E1a_E4b0.00
852415.46LSM12'protein_coding'15AELoss-17.793EU ER3a100.00
862485.43FNBP1'protein_coding'525AELoss-7.298EU ES AB CE E12a_E15b80.00
872565.38AB019438.1'IG_V_gene'12DELoss-41.731EU AB019438.10
882585.37AL122127.6'IG_J_gene'11DELoss-41.350N/AAL122127.6N/A
892605.36ENTPD1'protein_coding'414AELoss-7.652EU CE I1_AR10
902625.36AC110080.2'IG_V_gene'12DELoss-40.970N/AAC110080.2N/A
912635.35NR4A1'protein_coding'615DELoss-40.888EU ES AB NR4A10.00
922645.34RPL27A'protein_coding'15AELoss-9.092EU E1a_E2a0.00
932665.32HIST1H4B'protein_coding'11DELoss-40.010N/AHIST1H4BN/A
942685.31AB019438.1'IG_V_gene'12DELoss-39.760N/AAB019438.1N/A
952715.31IGLV2-5'IG_pseudogene'11DELoss-39.640N/AIGLV2-5N/A
962735.30AC007000.2'protein_coding'18AELoss-7.522EU AB E2_Aa0
972785.28SH3TC1'protein_coding'322AELoss-27.752EU CE I13_AR10
982835.27SMCY'protein_coding'227DELoss-38.660N/ASMCYN/A
992855.27PLEKHK1'protein_coding'417AELoss-11.6111EU AB ER4a100.00
1002895.26NFIC'protein_coding'514AELoss-5.351CE I6_AR10
1012905.23HTR3A'protein_coding'310AELoss-7.444EU CE I1_AR1100.00
1022965.21ZDHHC14'protein_coding'210AELoss-2.762EU I1_SR180
1033005.19AB019438.1'IG_V_gene'12DELoss-36.451EU AB019438.10
1043025.18AB019440.1'IG_V_gene'12DELoss-36.330N/AAB019440.1N/A
1053035.17NUDT4'protein_coding'15AELoss-18.313EU E3a_E4a100.00
1063075.16ZNF783'protein_coding'114AELoss-2.4612EU AB CE I5_AR242.86
1073095.15IGLV2-14'IG_V_gene'12DELoss-35.591EU IGLV2-140
1083105.15RECK'protein_coding'222AELoss-6.126EU CE ENST0000037796425.00
1093185.12D87021.1'IG_V_gene'12DELoss-34.761EU D87021.10
1103215.11BST2'protein_coding'15AELoss-5.352EU ES E1a_E3a100.00
1113235.11VDAC2'protein_coding'416AELoss-21.453EU AB E5a_E6a0.00
1123255.11KIAA1586'protein_coding'14AELoss-7.132EU E1a_E2a0.00
1133265.11NPHP3'protein_coding'857AELoss-3.8910EU AB I30_SR30.00
1143335.08RAP1B'protein_coding'210AELoss-31.082EU E6a_E7a100.00
1153355.08WDR32'protein_coding'39AELoss-8.691AB E6_Da0
1163375.07WBSCR1'protein_coding'27AELoss-21.067EU ES E2a_E3a66.67
1173395.06NLRP4'protein_coding'29DELoss-33.340N/ANLRP4N/A
1183405.05TMSL3'protein_coding'23AELoss-6.492EU AB ER1b0
1193425.04FOS'protein_coding'14DELoss-32.936EU AB IR FOS0.00
1203435.04IGLV3-1'IG_V_gene'12DELoss-32.840N/AIGLV3-1N/A
1213455.03GTF2H2B'protein_coding'117AELoss-9.813EU ER5a0.00
1223465.03WAS'protein_coding'112AELoss-7.181ES E2a_E4a0
1233495.01HIST1H2BD'protein_coding'23AELoss-8.033EU AB E1_Db0.00
1243505.01AC110080.2'IG_V_gene'12DELoss-32.140N/AAC110080.2N/A
1253525.00IGL@'IG_V_gene'12DELoss-32.010N/AIGL@N/A
1263535.00MS4A7'protein_coding'27AELoss-7.185EU AB ER3a50.00
1273574.99AL662782.3'protein_coding'17AELoss-2.712EU E4a_E5a100.00
1283614.97AC110080.2'IG_V_gene'12DELoss-31.450N/AAC110080.2N/A
1293624.97AB019440.1'IG_V_gene'12DELoss-31.251EU AB019440.10
1303634.97JMJD2C'protein_coding'325AELoss-6.543CE I17_AR50
1313644.96PPP1R15A'protein_coding'13DELoss-31.101EU PPP1R15A0
1323654.96DYNLT3'protein_coding'310AELoss-4.782EU E5a_E6a100.00
1333674.96IGHG3'IG_C_gene'610DELoss-31.035EU AB CE IGHG350.00
1343684.95AC073416.8'IG_V_gene'12DELoss-30.990N/AAC073416.8N/A
1353714.94ADD1'protein_coding'624AELoss-6.371EU E18a_E19a0
1363724.94DLD'protein_coding'114AELoss-8.893EU ES E3a_E5a50.00
1373774.93CLCC1'protein_coding'921AELoss-6.602EU AB E13_Db0
1383784.92JUN'protein_coding'11DELoss-30.370N/AJUNN/A
1393854.91SIDT1'protein_coding'227AELoss-7.137EU ES CE I24_AR120.00
1403864.91ANP32A'protein_coding'313AELoss-27.313EU ER4a0.00
1413874.91AC096767.3'IG_V_gene'12DELoss-29.980N/AAC096767.3N/A
1423904.90IGHJ3P'IG_pseudogene'11DELoss-29.800N/AIGHJ3PN/A
1433934.89AB019438.1'IG_V_gene'12DELoss-29.570N/AAB019438.1N/A
1443964.88AC110080.2'pseudogene'13DELoss-29.410N/AAC110080.2N/A
1453984.87ARMC8'protein_coding'428AELoss-7.711ES E1a_E4a0
1464004.86AB019439.1'IG_V_gene'12DELoss-29.140N/AAB019439.1N/A
1474044.86RPL21'protein_coding'410AELoss-6.864EU E4a_E5a66.67
1484064.85AC096767.3'IG_V_gene'12DELoss-28.881EU AC096767.30
1494084.85C17orf62'protein_coding'213AELoss-6.535ES AB CE E1a_E5a100.00
1504094.85AC073416.8'IG_V_gene'12DELoss-28.770N/AAC073416.8N/A
1514164.83COX6B1'protein_coding'26AELoss-5.794EU E4a_E5a100.00
1524264.80NDUFB6'protein_coding'24AELoss-7.921ES E2a_E4a0
1534284.80AC009958.3'IG_V_gene'12DELoss-27.930N/AAC009958.3N/A
1544294.80PFKFB3'protein_coding'929AELoss-28.313EU AB ER2d0.00
1554334.79CUGBP1'protein_coding'517AELoss-24.981EU E14a_E15a0
1564384.78ZFY'protein_coding'310DELoss-27.410N/AZFYN/A
1574414.76AP003035.2'rRNA_pseudogene'11DELoss-27.160N/AAP003035.2N/A
1584434.76C7orf28B'protein_coding'115AELoss-19.522EU ER6a0.00
1594444.76TUBB2A'protein_coding'14DELoss-14.002EU TUBB2A100.00
1604504.74C16orf7'protein_coding'322AELoss-4.2512EU ES AB IR CE E4_Aa0.00
1614524.74AC136428.3'protein_coding'12DELoss-26.680N/AAC136428.3N/A
1624534.74PGS1'protein_coding'319AELoss-7.336EU CE I7_SR20.00
1634544.74SLC37A1'protein_coding'323AELoss-6.7615AB IR E6_Da0
1644584.73USMG5'protein_coding'513AELoss-7.955EU ES E1a_E3a50.00
1654684.71C4orf34'protein_coding'15AELoss-8.244EU ES E3a_E5a66.67
1664704.71LST1'protein_coding'2127AELoss-2.7911EU ES AB ER3a57.14
1674714.71AC009958.3'IG_V_gene'12DELoss-26.100N/AAC009958.3N/A
1684724.71KIAA2013'protein_coding'48AELoss-16.072AB CE I4_AR150
1694744.70RPL37A'protein_coding'14AELoss-3.603EU ER4a50.00
1704774.70snoU2-30'snoRNA'11DELoss-25.970N/AsnoU2-30N/A
1714794.69ZNF655'protein_coding'47AELoss-3.235ES AB CE ENST000003578640
1724924.67RGS9'protein_coding'119AELoss-3.643EU CE I9_AR1100.00
1735004.65CDC42'protein_coding'411AELoss-7.722EU E7a_E8a0.00
1745014.65HIST1H4F'protein_coding'11DELoss-25.090N/AHIST1H4FN/A
1755024.65AL122127.6'IG_J_gene'11DELoss-25.090N/AAL122127.6N/A
1765174.62RHBDD1'protein_coding'311AELoss-14.052EU AB E1_Da0
1775234.61CLEC17A'protein_coding'216DELoss-12.903EU CLEC17A100.00
1785254.61AB019437.1'IG_V_gene'12DELoss-24.411EU AB019437.10
1795264.61HLA-DPB1'protein_coding'818AELoss-3.344EU ES AB ENST000003952720.00
1805274.60DUSP1'protein_coding'14DELoss-24.333EU IR DUSP10
1815284.60AB019441.1'IG_V_gene'12DELoss-24.310N/AAB019441.1N/A
1825304.60IGKV4-1'IG_V_gene'12DELoss-24.280N/AIGKV4-1N/A
1835324.59D87023.1'IG_J_gene'11DELoss-24.130N/AD87023.1N/A
1845374.58NCF1B'protein_coding'111AELoss-12.801EU ER1a0
1855384.58AB019437.1'IG_V_gene'12DELoss-23.920N/AAB019437.1N/A
1865464.56FANCL'protein_coding'421AELoss-6.058EU ES AB E3a_E5a66.67
1875484.55CPEB2'protein_coding'514AELoss-5.152EU CE I3_AR30
1885494.55AC015976.3'protein_coding'211AELoss-5.892EU E5a_E6a0.00
1895524.54IHPK2'protein_coding'411AELoss-5.592EU AB E2a_E3a0
1905534.54RORA'protein_coding'315AELoss-4.982EU AB E5_Aa0
1915554.53RNGTT'protein_coding'318AELoss-13.835EU AB CE E1a_E2a50.00
1925564.53AB019440.1'IG_V_gene'12DELoss-23.120N/AAB019440.1N/A
1935574.53C11orf1'protein_coding'14AELoss-5.971ES E2a_E4a0
1945594.53IGLV5-45'IG_V_gene'12DELoss-23.030N/AIGLV5-45N/A
1955604.52AFF3'protein_coding'429AELoss-7.263EU ES CE E1a_E5a0.00
1965624.52HIST1H4C'protein_coding'11DELoss-22.930N/AHIST1H4CN/A
1975664.51SNX9'protein_coding'220AELoss-4.001CE I5_AR90
1985694.51PLEKHM1'protein_coding'112AELoss-7.521AB E5_Da0
1995734.50EXOC1'protein_coding'423AELoss-7.294EU ES ER11a100.00
2005744.50SMU1'protein_coding'214AELoss-9.582EU ES E3a_E5a100.00
2015824.48UPP1'protein_coding'418AELoss-5.822ES E6a_E8a0
2025844.47SDHC'protein_coding'36AELoss-13.864EU ES ENST0000034275133.33
2035854.47IGKC'IG_V_gene'12DELoss-22.140N/AIGKCN/A
2045904.45CAMP'protein_coding'14DELoss-21.880N/ACAMPN/A
2055914.45RASA4'protein_coding'121AELoss-4.811EU ER4a0
2065934.45AB019438.1'IG_V_gene'12DELoss-21.780N/AAB019438.1N/A
2075944.44C4orf29'protein_coding'320AELoss-6.731ES E3a_E6a0
2085974.44MTMR15'protein_coding'115AELoss-3.233EU IR I140
2096054.42AC096767.3'IG_V_gene'12DELoss-21.461EU AC096767.30
2106064.42HCFC1R1'protein_coding'36AELoss-5.481AB E1_Da0
2116094.42RBKS'protein_coding'18AELoss-66.464EU AB CE E1_Da0
2126114.42AC034193.5'protein_coding'12AELoss-8.432EU ER2a100.00
2136144.41WDR66'protein_coding'223AELoss-3.279EU ER16a62.50
2146154.41METTL2B'protein_coding'19AELoss-6.811AB E1_Da0
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2166234.40AB019439.1'IG_V_gene'12DELoss-21.041EU AB019439.10
2176254.39C1orf102'protein_coding'414AELoss-5.941EU ER12b0
2186274.38RIPK5'protein_coding'315AELoss-6.811EU E7a_E8a0
2196314.38DALRD3'protein_coding'317AELoss-6.686AB CE E13_Da0
2206344.37NUMB'protein_coding'410AELoss-9.683EU ER9a100.00
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2236444.36UTY'protein_coding'635DELoss-20.560N/AUTYN/A
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2256514.35OSBPL3'protein_coding'1032AELoss-2.418EU ES AB CE I2_AR40.00
2266524.35HLA-DMA'protein_coding'513AELoss-11.783ES AB E3a_E5a0.00
2276534.35ZCCHC6'protein_coding'735AELoss-18.533AB CE E2_Da0
2286604.34HDAC9'protein_coding'634DELoss-20.198EU ES AB HDAC916.67
2296734.31RPL34'protein_coding'39AELoss-3.382EU E4a_E5a0.00
2306754.31THAP3'protein_coding'413AELoss-8.183EU E2a_E3a50.00
2316824.30AB019440.1'IG_V_gene'12DELoss-19.651EU AB019440.10
2326854.29D87018.1'IG_V_gene'12DELoss-19.550N/AD87018.1N/A
2336864.28PRELID1'protein_coding'15AELoss-11.561AB E4_Aa0
2346874.28DAP3'protein_coding'215AELoss-5.914EU ES E3a_E5a66.67
2356884.28VSIG6'protein_coding'12DELoss-19.461EU VSIG60
2366964.27MLL3'protein_coding'362AELoss-5.034EU ES E27a_E29a33.33
2376974.26MOBKL3'protein_coding'616AELoss-10.765EU ES E2a_E5a75.00
2386984.26NDUFA3'protein_coding'512AELoss-13.433EU ES ER6c50.00
2396994.26GMPR2'protein_coding'315AELoss-6.051ES E9a_E11a0
2407004.26FAM3C'protein_coding'110AELoss-12.094EU E8a_E9a0.00
2417024.26AC009958.3'IG_V_gene'12DELoss-19.130N/AAC009958.3N/A
2427054.26CCDC90B'protein_coding'19AELoss-6.381EU E1a_E2a0
2437064.26DUSP'protein_coding'14DELoss-19.100N/ADUSPN/A
2447084.25TMEM156'protein_coding'210AELoss-7.803EU ES E1a_E3a100.00
2457114.25SETX'protein_coding'327AELoss-6.681I1_SR10
2467124.25SLC12A8'protein_coding'320AELoss-4.442EU AB ER6a0
2477134.24C1orf63'protein_coding'15AELoss-6.255EU AB IR E3a_E4a0
2487154.24GMDS'protein_coding'213AELoss-3.933EU CE I9_AR12100.00
2497194.23IGLV3-25'IG_V_gene'12DELoss-18.730N/AIGLV3-25N/A
2507234.22PAIP1'protein_coding'314AELoss-5.102EU ER10a0.00
2517294.21JAM3'protein_coding'19AELoss-3.553EU CE I1_AR60