Summary page for comparison: 'DLBCL_vs_BCellPool' (HS0640_vs_BCELL) - Project: Lymphoma


Download complete candidate list as tab delimited text file: DLBCL_vs_BCellPool.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 9,950 (of 36,953 possible genes)

DE Genes: 6,047

AE Genes: 5,600

Alternative Exon Usage (EU) Genes: 3,994

Alernative Exon Skipping (ES) Genes: 915

Alternative Exon Boundary (AB) Genes: 2,037

Intron Retention (IR) Genes: 446

Cryptic Exon (CE) Genes: 751


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1117.51HLA-DRB1'protein_coding'16AELoss-1013.612EU E2a_E3a100.00
2215.65ARHGAP15'protein_coding'217AELoss-403.122AB I1_SR10
3315.02BRE'protein_coding'721AELoss-1378.1810EU AB IR I1_AR1100.00
4412.85RPL7'protein_coding'517AELoss-264.9415EU AB CE ER7a72.73
5512.81HLA-B'protein_coding'521AELoss-262.155EU E3a_E4a0.00
6612.15HLA-DQA1'protein_coding'411AELoss-125.637EU AB ENST0000039536325.00
7711.68RPL37'protein_coding'28AELoss-921.418EU ES AB ER2b80.00
8810.92AL671277.5'protein_coding'112AELoss-34.5922EU AB IR CE E7_Aa87.50
9910.70RPL28'protein_coding'15AELoss-1742.915EU ER3a50.00
101010.37RPL23A'protein_coding'39AELoss-200.324EU ER4a100.00
111110.25TOR1AIP1'protein_coding'415AELoss-44.533EU AB E2a_E3a100.00
121210.10IGHG4'IG_C_gene'29AELoss-46.344EU AB CE I4_AR10.00
13139.64FNIP1'protein_coding'320AELoss-54.105EU AB CE I15_AR10
14149.62HLA-DQB1'protein_coding'817AELoss-50.375EU ES AB E8a_E9a0.00
15159.53SEPP1'protein_coding'14DEGain739.210N/ASEPP1N/A
16169.52TBC1D4'protein_coding'221AELoss-21.9126EU AB CE ER9a90.00
17179.26CXCL9'protein_coding'14DEGain611.180N/ACXCL9N/A
18189.23CCDC144B'protein_coding'221AELoss-22.9410EU AB IR CE I7100.00
19199.08PCNP'protein_coding'25AELoss-42.973EU CE I1_SR10
20208.97AHSA2'protein_coding'723AELoss-9.0514EU ES AB IR E11_Db0.00
21218.72CCL19'protein_coding'26DEGain422.860N/ACCL19N/A
22228.68LUM'protein_coding'13DEGain410.620N/ALUMN/A
23238.63APOE'protein_coding'14DEGain395.340N/AAPOEN/A
24248.47TET1'protein_coding'112AELoss-34.581CE I3_AR10
25258.40IGHD'IG_C_gene'27DELoss-338.900N/AIGHDN/A
26268.29TAOK3'protein_coding'225AELoss-42.909EU CE I3_AR50.00
27278.29CCDC152'protein_coding'19AELoss-2.392EU ER4a100.00
28288.25FOSB'protein_coding'14DELoss-303.833EU AB FOSB0
29298.18PRPF18'protein_coding'419AELoss-128.456EU AB E3_Da33.33
30308.17BGN'protein_coding'211DEGain287.150N/ABGNN/A
31318.14AC004833.1'pseudogene'13AELoss-42.321AB E2_Da0
32328.01SLC40A1'protein_coding'18DEGain257.260N/ASLC40A1N/A
33338.00SPARC'protein_coding'110DEGain256.140N/ASPARCN/A
34347.98AC004448.3'pseudogene'12AELoss-5.144EU AB E2_Aa0.00
35357.96AC112777.7'rRNA_pseudogene'11DELoss-248.850N/AAC112777.7N/A
36367.92EIF4E'protein_coding'29AELoss-31.033EU E5a_E6a50.00
37377.92GAB1'protein_coding'212AELoss-20.792EU CE I3_AR40
38387.88CCL21'protein_coding'26DEGain234.880N/ACCL21N/A
39397.88AL163011.3'rRNA_pseudogene'11DELoss-234.840N/AAL163011.3N/A
40407.86HIST1H2AC'protein_coding'35AELoss-15.482EU AB E3_Aa0
41417.83APOC1'protein_coding'15DEGain227.280N/AAPOC1N/A
42427.81ITGB7'protein_coding'216AEGain20.006EU AB IR I4_AR10
43437.77COL3A1'protein_coding'254DEGain218.980N/ACOL3A1N/A
44447.74AC091982.3'pseudogene'12AELoss-21.821AB E2_Aa0
45457.71ENPP2'protein_coding'226DEGain209.970N/AENPP2N/A
46467.67D87015.2'miRNA'11DELoss-204.200N/AD87015.2N/A
47477.65COL1A2'protein_coding'254DEGain201.520N/ACOL1A2N/A
48487.64FAM172A'protein_coding'213AELoss-18.377CE I10_AR230
49497.57TIMP3'protein_coding'28DEGain190.540N/ATIMP3N/A
50507.57FN1'protein_coding'1050DEGain190.470N/AFN1N/A
51517.57IGFBP7'protein_coding'15DEGain190.440N/AIGFBP7N/A
52527.57A2M'protein_coding'240DEGain190.180N/AA2MN/A
53537.55PLA2G2D'protein_coding'14DEGain186.850N/APLA2G2DN/A
54547.54C3'protein_coding'141DEGain185.930N/AC3N/A
55557.53AC010970.2'processed_pseudogene'11DELoss-184.440N/AAC010970.2N/A
56567.51AC004866.1'rRNA_pseudogene'11DELoss-182.700N/AAC004866.1N/A
57577.40IGHV4-31'IG_C_gene'27AEGain3.823EU E4a_E5a0.00
58587.38HLA-DRB5'protein_coding'27AEGain16.462EU E3a_E4a0.00
59597.35MMP9'protein_coding'113DEGain163.390N/AMMP9N/A
60607.34C1QB'protein_coding'13DEGain162.520N/AC1QBN/A
61617.34IGHE'IG_C_gene'211DEGain162.450N/AIGHEN/A
62627.34FER'protein_coding'120AELoss-25.302EU CE I2_AR20
63637.34PGS1'protein_coding'319AELoss-27.455EU CE I7_SR20
64647.33AC022210.8'pseudogene'13AEGain20.662ES AB E1_Da0
65657.32PCBD2'protein_coding'25AELoss-23.514IR I3_AR110
66667.29SERPING1'protein_coding'617DEGain156.640N/ASERPING1N/A
67677.29RAB3GAP2'protein_coding'239AELoss-16.311CE I27_AR10
68687.28H3F3A'protein_coding'411AELoss-20.919EU AB E2a_E3b80.00
69697.27MOBKL3'protein_coding'616AELoss-15.175EU ES AB E2a_E5a66.67
70707.23POSTN'protein_coding'524DEGain149.700N/APOSTNN/A
71717.19LYZ'protein_coding'14DEGain145.860N/ALYZN/A
72727.18C15orf57'protein_coding'25AELoss-27.682EU ES E1a_E3a100.00
73737.18SCP2'protein_coding'521AELoss-22.545EU CE I12_AR10.00
74747.17AC002480.1'pseudogene'12AELoss-26.303AB IR I1_AR10
75757.17CCL2'protein_coding'13DEGain143.820N/ACCL2N/A
76767.14SLC37A1'protein_coding'323AELoss-19.7018AB IR CE E6_Da0
77777.13AC044839.16'rRNA_pseudogene'11DELoss-140.450N/AAC044839.16N/A
78787.12CWC15'protein_coding'18AELoss-19.412EU E6a_E7a0.00
79797.11C1orf71'protein_coding'315AELoss-20.101CE I2_AR10
80807.09COL1A1'protein_coding'151DEGain136.660N/ACOL1A1N/A
81817.09SC-9C5.12'protein_coding'35AEGain4.4217EU ES AB IR I1_SR350.00
82827.07NR4A2'protein_coding'314AEGain3.946EU AB CE I1_AR20.00
83837.06AC010468.5'pseudogene'12AELoss-14.491EU ENST000003989810
84847.03FSTL1'protein_coding'111DEGain130.950N/AFSTL1N/A
85857.01RARRES1'protein_coding'16DEGain128.760N/ARARRES1N/A
86867.01SPARCL1'protein_coding'111DEGain128.630N/ASPARCL1N/A
87877.00WDR66'protein_coding'223AELoss-7.8513EU E16a_E17a66.67
88886.99RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.952EU E3a_E4a0
89896.99TCTN1'protein_coding'827AELoss-2.3913EU ES AB E3_Aa40.00
90906.97IGL@'IG_V_gene'12DELoss-125.590N/AIGL@N/A
91916.95C1QA'protein_coding'311DEGain123.640N/AC1QAN/A
92926.95NAPEPLD'protein_coding'16AELoss-9.373EU I1_SR40.00
93936.94GPNMB'protein_coding'314DEGain122.780N/AGPNMBN/A
94946.91MGST3'protein_coding'717AELoss-6.591EU ER10a0
95956.89SSU_rRNA_5'rRNA'11DELoss-118.710N/ASSU_rRNA_5N/A
96966.87CTSL1'protein_coding'414DEGain117.000N/ACTSL1N/A
97976.86SNX6'protein_coding'420AELoss-16.921CE I11_AR20
98986.83C1QC'protein_coding'37DEGain113.700N/AC1QCN/A
99996.81AHR'protein_coding'213AELoss-21.173AB IR I11_SR10
1001006.79MS4A6A'protein_coding'17DEGain110.850N/AMS4A6AN/A
1011016.76D87024.1'miRNA'11DELoss-108.420N/AD87024.1N/A
1021026.74TMEM176B'protein_coding'29DEGain107.040N/ATMEM176BN/A
1031036.72CCL18'protein_coding'13DEGain105.150N/ACCL18N/A
1041046.71THY1'protein_coding'14DEGain104.610N/ATHY1N/A
1051056.69RPS4Y1'protein_coding'17DELoss-103.330N/ARPS4Y1N/A
1061066.69GOLGA3'protein_coding'124AELoss-47.414EU AB IR I1_AR20
1071076.67ADAMDEC1'protein_coding'215DEGain101.770N/AADAMDEC1N/A
1081086.65RHBDD1'protein_coding'311AELoss-15.473AB CE E1_Da0
1091096.64ACYP1'protein_coding'24AEGain8.667EU AB IR I3_AR2100.00
1101106.63FNBP1'protein_coding'525AELoss-11.659EU ES AB CE E12a_E15b100.00
1111116.63DCN'protein_coding'610DEGain99.310N/ADCNN/A
1121126.62HNRPA2B1'protein_coding'519AELoss-44.449EU ES AB IR E8a_E10a33.33
1131136.61ANKRD11'protein_coding'622AELoss-15.708EU AB CE I2_SR20
1141146.60NLRC3'protein_coding'325AELoss-13.521EU E10a_E11a0
1151156.58FAM3C'protein_coding'110AELoss-12.084EU E8a_E9a0.00
1161166.58MCTP2'protein_coding'225AELoss-30.758EU ES AB CE I1_AR10.00
1171176.57CSF1R'protein_coding'224DEGain95.200N/ACSF1RN/A
1181186.54RPL9'protein_coding'18AEGain2.0312EU AB IR E6a_E7a60.00
1191196.53AL122127.6'IG_J_gene'11DELoss-92.710N/AAL122127.6N/A
1201206.52AP1G2'protein_coding'223AELoss-16.7812ES AB IR CE E18a_E20a0.00
1211216.50SAPS1'protein_coding'124AELoss-68.611EU E17a_E18a0
1221226.46ESNA1'protein_coding'522AELoss-19.341CE I12_AR10
1231236.41CD40'protein_coding'414AELoss-18.5511EU ES AB ENST0000037227620.00
1241246.41MAG'protein_coding'314AEGain42.115EU E10a_E11a75.00
1251256.39HLA-DQB2'protein_coding'49AEGain2.636EU ER5a40.00
1261266.39COL6A1'protein_coding'135DEGain83.860N/ACOL6A1N/A
1271276.38PLA2G7'protein_coding'112DEGain83.370N/APLA2G7N/A
1281286.37TIMP1'protein_coding'411DEGain82.710N/ATIMP1N/A
1291296.36NR4A1'protein_coding'615DELoss-82.218EU ES AB NR4A10.00
1301306.35C9orf86'protein_coding'625AEGain12.491AB E1_Ab0
1311316.34NUDT4'protein_coding'15AELoss-12.592EU E3a_E4a100.00
1321326.32C1S'protein_coding'634DEGain80.140N/AC1SN/A
1331336.32FBP1'protein_coding'17AELoss-24.9410EU CE I4_AR287.50
1341346.31MNDA'protein_coding'17DEGain79.130N/AMNDAN/A
1351356.30IFITM3'protein_coding'27DEGain32.994EU AB IFITM3100.00
1361366.30SSU_rRNA_5'rRNA'11DELoss-78.530N/ASSU_rRNA_5N/A
1371376.27FABP4'protein_coding'14DEGain77.340N/AFABP4N/A
1381386.26IL18'protein_coding'16DEGain76.620N/AIL18N/A
1391396.24KCNMA1'protein_coding'1351AELoss-4.227EU ES AB CE I2_AR1850.00
1401406.24RASSF4'protein_coding'515DEGain75.710N/ARASSF4N/A
1411416.24TMEM176A'protein_coding'17DEGain75.570N/ATMEM176AN/A
1421426.22COL4A1'protein_coding'467DEGain74.430N/ACOL4A1N/A
1431436.22EFEMP1'protein_coding'416DEGain74.390N/AEFEMP1N/A
1441446.22AQP1'protein_coding'410DEGain74.310N/AAQP1N/A
1451456.21AC004098.1'pseudogene'12AELoss-14.722AB E1_Da0
1461466.20OR2I1P'unprocessed_pseudogene'11DEGain73.310N/AOR2I1PN/A
1471476.19ZDHHC14'protein_coding'210AELoss-7.831I1_SR180
1481486.18SIDT1'protein_coding'227AELoss-8.4415EU ES CE I24_AR176.92
1491496.18EXOSC8'protein_coding'315AEGain13.046EU AB IR E4_Da100.00
1501506.18WSB1'protein_coding'29AELoss-12.715ES AB IR E1a_E3a0.00
1511516.16AC116654.4'IG_V_gene'12DELoss-71.410N/AAC116654.4N/A
1521526.16RPS21'protein_coding'515AELoss-15.119EU AB E3e_E3f57.14
1531536.15SMARCA5'protein_coding'124AELoss-11.981ES E13a_E15a0
1541546.14WDR68'protein_coding'18AELoss-31.005EU E5a_E6a75.00
1551556.13COL4A2'protein_coding'461DEGain70.220N/ACOL4A2N/A
1561566.13RPL3'protein_coding'417AELoss-417.2510EU AB ER9b50.00
1571576.12C7orf10'protein_coding'319AELoss-79.901CE I15_AR100
1581586.12IGLV3-21'IG_V_gene'12DELoss-69.650N/AIGLV3-21N/A
1591596.10MMP2'protein_coding'113DEGain68.820N/AMMP2N/A
1601606.09RPS27'protein_coding'37AELoss-35.082EU E3c_E4a0.00
1611616.09PTGDS'protein_coding'310DEGain67.890N/APTGDSN/A
1621626.08CD14'protein_coding'24DEGain67.720N/ACD14N/A
1631636.07IGLV2-5'IG_pseudogene'11DELoss-67.130N/AIGLV2-5N/A
1641646.05MGP'protein_coding'14DEGain66.300N/AMGPN/A
1651656.04ATAD2B'protein_coding'231AELoss-10.284CE I1_AR10
1661666.03FAM126B'protein_coding'112AELoss-13.164CE I1_SR40
1671676.02SLCO2B1'protein_coding'214DEGain64.860N/ASLCO2B1N/A
1681686.01COL6A2'protein_coding'533DEGain64.510N/ACOL6A2N/A
1691696.01GZMK'protein_coding'15DEGain64.440N/AGZMKN/A
1701706.01PDCD7'protein_coding'29AEGain12.427EU AB IR I4_AR10
1711716.00IL33'protein_coding'17DEGain64.160N/AIL33N/A
1721726.00IGHA1'IG_C_gene'13DELoss-64.110N/AIGHA1N/A
1731735.99IFITM2'protein_coding'27AELoss-14.061EU E1c_E2a0
1741745.98DTWD2'protein_coding'16AELoss-11.712EU CE I1_AR10
1751755.97GCDH'protein_coding'112AELoss-47.033IR I6_AR20
1761765.96AB019440.1'IG_V_gene'12DELoss-27.222EU AB019440.1100.00
1771775.95TCN2'protein_coding'314DEGain61.760N/ATCN2N/A
1781785.95AC140077.17'protein_coding'110DEGain61.620N/AAC140077.17N/A
1791795.94CCDC80'protein_coding'18DEGain61.450N/ACCDC80N/A
1801805.93MFAP4'protein_coding'28DEGain61.180N/AMFAP4N/A
1811815.93NNMT'protein_coding'13DEGain60.980N/ANNMTN/A
1821825.93C7'protein_coding'118DEGain60.830N/AC7N/A
1831835.91ZNF655'protein_coding'47AELoss-7.425EU ES CE I2_AR20.00
1841845.91PHIP'protein_coding'242AELoss-14.784EU AB I4_SR10.00
1851855.90GZMA'protein_coding'15DEGain59.730N/AGZMAN/A
1861865.90CST3'protein_coding'38DEGain59.630N/ACST3N/A
1871875.89UCHL3'protein_coding'210AEGain14.792AB CE E9_Da0
1881885.89RNGTT'protein_coding'318AELoss-9.943EU AB CE E1a_E2a0
1891895.89ENTPD1'protein_coding'414AELoss-9.242CE I1_AR10
1901905.89NCOA4'protein_coding'516AEGain41.231ES E2a_E4a0
1911915.88PAOX'protein_coding'920AELoss-7.634EU AB E7_Aa0.00
1921925.87SERPINF1'protein_coding'18DEGain58.530N/ASERPINF1N/A
1931935.86AAAS'protein_coding'217AEGain8.943AB IR I10
1941945.83TYROBP'protein_coding'15DEGain57.000N/ATYROBPN/A
1951955.83ACOT7'protein_coding'615AEGain4.782EU CE I3_AR10
1961965.83DAB2'protein_coding'215DEGain56.880N/ADAB2N/A
1971975.82DOPEY2'protein_coding'238AELoss-9.276EU I2_SR325.00
1981985.82TMEM156'protein_coding'210AELoss-8.595EU ES E1a_E3a100.00
1991995.82ARMC8'protein_coding'428AELoss-8.752EU ES E1a_E4a0.00
2002005.80CPEB2'protein_coding'514AELoss-6.072EU CE I3_AR30
2012015.79HN1'protein_coding'512AELoss-15.443EU AB E7_Da100.00
2022025.78KCNN4'protein_coding'211AELoss-7.252EU ES E5a_E7a0.00
2032035.78IGFBP3'protein_coding'310DEGain54.980N/AIGFBP3N/A
2042045.78PPP1R15A'protein_coding'13DELoss-54.830N/APPP1R15AN/A
2052055.77A2LD1'protein_coding'25AELoss-11.192AB CE I2_AR100
2062065.76FOLR2'protein_coding'212AEGain104.6615EU AB ER2a72.73
2072075.76CYP27A1'protein_coding'19DEGain54.120N/ACYP27A1N/A
2082085.76PLEKHA4'protein_coding'220AELoss-6.359EU CE I7_AR185.71
2092095.75CTHRC1'protein_coding'27DEGain53.990N/ACTHRC1N/A
2102105.75RBKS'protein_coding'18AELoss-296.943EU AB CE I1_AR10
2112115.74TNC'protein_coding'528DEGain53.560N/ATNCN/A
2122125.74SFRP4'protein_coding'16DEGain53.520N/ASFRP4N/A
2132135.74AC007599.6'rRNA_pseudogene'11DELoss-53.460N/AAC007599.6N/A
2142145.73CALD1'protein_coding'417DEGain53.260N/ACALD1N/A
2152155.73TIMD4'protein_coding'313DEGain53.200N/ATIMD4N/A
2162165.70AC096767.3'IG_V_gene'12DELoss-51.990N/AAC096767.3N/A
2172175.69ZNF682'protein_coding'37AELoss-8.842EU E3a_E4a0.00
2182185.69NFIC'protein_coding'514AELoss-6.977EU CE I6_AR180.00
2192195.69JUN'protein_coding'11DELoss-51.700N/AJUNN/A
2202205.69ABI3BP'protein_coding'567DEGain51.610N/AABI3BPN/A
2212215.69AUP1'protein_coding'217AELoss-8.768EU ES AB E3a_E6a100.00
2222225.68HLA-A'protein_coding'723AEGain53.263EU AB E8b_E9a100.00
2232235.67KIAA1033'protein_coding'234AELoss-8.811EU E24a_E25a0
2242245.67TMEM50A'protein_coding'17AELoss-10.791ES E2a_E4a0
2252255.66GTF2I'protein_coding'335AELoss-10.901ES E30a_E32a0
2262265.66AB019438.1'IG_V_gene'12DELoss-50.410N/AAB019438.1N/A
2272275.65AL122127.6'IG_J_gene'11DELoss-50.300N/AAL122127.6N/A
2282285.65AC005000.2'pseudogene'12AELoss-12.982IR I10
2292295.65SLAMF8'protein_coding'25DEGain50.140N/ASLAMF8N/A
2302305.65IGHA2'IG_C_gene'25AELoss-622.529EU AB CE E3a_E4a60.00
2312315.64ICA1'protein_coding'931AELoss-2.1011EU ES AB E12_Db57.14
2322325.64TK1'protein_coding'210AEGain2.632EU AB E5_Da0
2332335.63RBM5'protein_coding'227AELoss-8.677ES AB IR CE E16a_E18a0.00
2342345.63NUMB'protein_coding'410AELoss-9.015EU ES ER9a75.00
2352355.63GCSH'protein_coding'15AELoss-6.252EU E2a_E3a100.00
2362365.62C2'protein_coding'621DEGain49.170N/AC2N/A
2372375.62CLIC2'protein_coding'27DEGain49.160N/ACLIC2N/A
2382385.62SYTL3'protein_coding'321AELoss-5.335EU IR I16_AR10
2392395.61MAP3K12'protein_coding'115AELoss-10.3120EU AB IR CE I6_AR166.67
2402405.60RAP1B'protein_coding'210AELoss-11.864EU CE E6a_E7a50.00
2412415.60AIF1'protein_coding'59AEGain101.6010EU AB E3a_E4b87.50
2422425.60MND1'protein_coding'18AEGain7.572ES CE I4_AR10
2432435.60ESR2'protein_coding'614AELoss-9.087EU CE I9_SR40
2442445.59ERO1LB'protein_coding'320AELoss-7.302EU ES E1a_E3a100.00
2452455.58CFH'protein_coding'425DEGain47.900N/ACFHN/A
2462465.58NCALD'protein_coding'511AEGain8.203EU ES CE ER4a0.00
2472475.58GIMAP4'protein_coding'13DEGain47.840N/AGIMAP4N/A
2482485.58KIF15'protein_coding'236AEGain9.741AB E24_Aa0
2492495.57DNAJC5B'protein_coding'16DEGain47.600N/ADNAJC5BN/A
2502505.57HNRNPH3'protein_coding'212AELoss-11.436EU ES AB E2a_E5a25.00
2512515.57AB019439.1'IG_V_gene'12DELoss-47.471EU AB019439.10


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1117.51HLA-DRB1'protein_coding'16AELoss-1013.612EU E2a_E3a100.00
2215.65ARHGAP15'protein_coding'217AELoss-403.122AB I1_SR10
3315.02BRE'protein_coding'721AELoss-1378.1810EU AB IR I1_AR1100.00
4412.85RPL7'protein_coding'517AELoss-264.9415EU AB CE ER7a72.73
5512.81HLA-B'protein_coding'521AELoss-262.155EU E3a_E4a0.00
6612.15HLA-DQA1'protein_coding'411AELoss-125.637EU AB ENST0000039536325.00
7711.68RPL37'protein_coding'28AELoss-921.418EU ES AB ER2b80.00
8810.92AL671277.5'protein_coding'112AELoss-34.5922EU AB IR CE E7_Aa87.50
9910.70RPL28'protein_coding'15AELoss-1742.915EU ER3a50.00
101010.37RPL23A'protein_coding'39AELoss-200.324EU ER4a100.00
111110.25TOR1AIP1'protein_coding'415AELoss-44.533EU AB E2a_E3a100.00
121210.10IGHG4'IG_C_gene'29AELoss-46.344EU AB CE I4_AR10.00
13139.64FNIP1'protein_coding'320AELoss-54.105EU AB CE I15_AR10
14149.62HLA-DQB1'protein_coding'817AELoss-50.375EU ES AB E8a_E9a0.00
15169.52TBC1D4'protein_coding'221AELoss-21.9126EU AB CE ER9a90.00
16189.23CCDC144B'protein_coding'221AELoss-22.9410EU AB IR CE I7100.00
17199.08PCNP'protein_coding'25AELoss-42.973EU CE I1_SR10
18208.97AHSA2'protein_coding'723AELoss-9.0514EU ES AB IR E11_Db0.00
19248.47TET1'protein_coding'112AELoss-34.581CE I3_AR10
20268.29TAOK3'protein_coding'225AELoss-42.909EU CE I3_AR50.00
21278.29CCDC152'protein_coding'19AELoss-2.392EU ER4a100.00
22288.25FOSB'protein_coding'14DELoss-303.833EU AB FOSB0
23298.18PRPF18'protein_coding'419AELoss-128.456EU AB E3_Da33.33
24318.14AC004833.1'pseudogene'13AELoss-42.321AB E2_Da0
25347.98AC004448.3'pseudogene'12AELoss-5.144EU AB E2_Aa0.00
26367.92EIF4E'protein_coding'29AELoss-31.033EU E5a_E6a50.00
27377.92GAB1'protein_coding'212AELoss-20.792EU CE I3_AR40
28407.86HIST1H2AC'protein_coding'35AELoss-15.482EU AB E3_Aa0
29427.81ITGB7'protein_coding'216AEGain20.006EU AB IR I4_AR10
30447.74AC091982.3'pseudogene'12AELoss-21.821AB E2_Aa0
31487.64FAM172A'protein_coding'213AELoss-18.377CE I10_AR230
32577.40IGHV4-31'IG_C_gene'27AEGain3.823EU E4a_E5a0.00
33587.38HLA-DRB5'protein_coding'27AEGain16.462EU E3a_E4a0.00
34627.34FER'protein_coding'120AELoss-25.302EU CE I2_AR20
35637.34PGS1'protein_coding'319AELoss-27.455EU CE I7_SR20
36647.33AC022210.8'pseudogene'13AEGain20.662ES AB E1_Da0
37657.32PCBD2'protein_coding'25AELoss-23.514IR I3_AR110
38677.29RAB3GAP2'protein_coding'239AELoss-16.311CE I27_AR10
39687.28H3F3A'protein_coding'411AELoss-20.919EU AB E2a_E3b80.00
40697.27MOBKL3'protein_coding'616AELoss-15.175EU ES AB E2a_E5a66.67
41727.18C15orf57'protein_coding'25AELoss-27.682EU ES E1a_E3a100.00
42737.18SCP2'protein_coding'521AELoss-22.545EU CE I12_AR10.00
43747.17AC002480.1'pseudogene'12AELoss-26.303AB IR I1_AR10
44767.14SLC37A1'protein_coding'323AELoss-19.7018AB IR CE E6_Da0
45787.12CWC15'protein_coding'18AELoss-19.412EU E6a_E7a0.00
46797.11C1orf71'protein_coding'315AELoss-20.101CE I2_AR10
47817.09SC-9C5.12'protein_coding'35AEGain4.4217EU ES AB IR I1_SR350.00
48827.07NR4A2'protein_coding'314AEGain3.946EU AB CE I1_AR20.00
49837.06AC010468.5'pseudogene'12AELoss-14.491EU ENST000003989810
50877.00WDR66'protein_coding'223AELoss-7.8513EU E16a_E17a66.67
51886.99RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.952EU E3a_E4a0
52896.99TCTN1'protein_coding'827AELoss-2.3913EU ES AB E3_Aa40.00
53926.95NAPEPLD'protein_coding'16AELoss-9.373EU I1_SR40.00
54946.91MGST3'protein_coding'717AELoss-6.591EU ER10a0
55976.86SNX6'protein_coding'420AELoss-16.921CE I11_AR20
56996.81AHR'protein_coding'213AELoss-21.173AB IR I11_SR10
571066.69GOLGA3'protein_coding'124AELoss-47.414EU AB IR I1_AR20
581086.65RHBDD1'protein_coding'311AELoss-15.473AB CE E1_Da0
591096.64ACYP1'protein_coding'24AEGain8.667EU AB IR I3_AR2100.00
601106.63FNBP1'protein_coding'525AELoss-11.659EU ES AB CE E12a_E15b100.00
611126.62HNRPA2B1'protein_coding'519AELoss-44.449EU ES AB IR E8a_E10a33.33
621136.61ANKRD11'protein_coding'622AELoss-15.708EU AB CE I2_SR20
631146.60NLRC3'protein_coding'325AELoss-13.521EU E10a_E11a0
641156.58FAM3C'protein_coding'110AELoss-12.084EU E8a_E9a0.00
651166.58MCTP2'protein_coding'225AELoss-30.758EU ES AB CE I1_AR10.00
661186.54RPL9'protein_coding'18AEGain2.0312EU AB IR E6a_E7a60.00
671206.52AP1G2'protein_coding'223AELoss-16.7812ES AB IR CE E18a_E20a0.00
681216.50SAPS1'protein_coding'124AELoss-68.611EU E17a_E18a0
691226.46ESNA1'protein_coding'522AELoss-19.341CE I12_AR10
701236.41CD40'protein_coding'414AELoss-18.5511EU ES AB ENST0000037227620.00
711246.41MAG'protein_coding'314AEGain42.115EU E10a_E11a75.00
721256.39HLA-DQB2'protein_coding'49AEGain2.636EU ER5a40.00
731296.36NR4A1'protein_coding'615DELoss-82.218EU ES AB NR4A10.00
741306.35C9orf86'protein_coding'625AEGain12.491AB E1_Ab0
751316.34NUDT4'protein_coding'15AELoss-12.592EU E3a_E4a100.00
761336.32FBP1'protein_coding'17AELoss-24.9410EU CE I4_AR287.50
771356.30IFITM3'protein_coding'27DEGain32.994EU AB IFITM3100.00
781396.24KCNMA1'protein_coding'1351AELoss-4.227EU ES AB CE I2_AR1850.00
791456.21AC004098.1'pseudogene'12AELoss-14.722AB E1_Da0
801476.19ZDHHC14'protein_coding'210AELoss-7.831I1_SR180
811486.18SIDT1'protein_coding'227AELoss-8.4415EU ES CE I24_AR176.92
821496.18EXOSC8'protein_coding'315AEGain13.046EU AB IR E4_Da100.00
831506.18WSB1'protein_coding'29AELoss-12.715ES AB IR E1a_E3a0.00
841526.16RPS21'protein_coding'515AELoss-15.119EU AB E3e_E3f57.14
851536.15SMARCA5'protein_coding'124AELoss-11.981ES E13a_E15a0
861546.14WDR68'protein_coding'18AELoss-31.005EU E5a_E6a75.00
871566.13RPL3'protein_coding'417AELoss-417.2510EU AB ER9b50.00
881576.12C7orf10'protein_coding'319AELoss-79.901CE I15_AR100
891606.09RPS27'protein_coding'37AELoss-35.082EU E3c_E4a0.00
901656.04ATAD2B'protein_coding'231AELoss-10.284CE I1_AR10
911666.03FAM126B'protein_coding'112AELoss-13.164CE I1_SR40
921706.01PDCD7'protein_coding'29AEGain12.427EU AB IR I4_AR10
931735.99IFITM2'protein_coding'27AELoss-14.061EU E1c_E2a0
941745.98DTWD2'protein_coding'16AELoss-11.712EU CE I1_AR10
951755.97GCDH'protein_coding'112AELoss-47.033IR I6_AR20
961765.96AB019440.1'IG_V_gene'12DELoss-27.222EU AB019440.1100.00
971835.91ZNF655'protein_coding'47AELoss-7.425EU ES CE I2_AR20.00
981845.91PHIP'protein_coding'242AELoss-14.784EU AB I4_SR10.00
991875.89UCHL3'protein_coding'210AEGain14.792AB CE E9_Da0
1001885.89RNGTT'protein_coding'318AELoss-9.943EU AB CE E1a_E2a0
1011895.89ENTPD1'protein_coding'414AELoss-9.242CE I1_AR10
1021905.89NCOA4'protein_coding'516AEGain41.231ES E2a_E4a0
1031915.88PAOX'protein_coding'920AELoss-7.634EU AB E7_Aa0.00
1041935.86AAAS'protein_coding'217AEGain8.943AB IR I10
1051955.83ACOT7'protein_coding'615AEGain4.782EU CE I3_AR10
1061975.82DOPEY2'protein_coding'238AELoss-9.276EU I2_SR325.00
1071985.82TMEM156'protein_coding'210AELoss-8.595EU ES E1a_E3a100.00
1081995.82ARMC8'protein_coding'428AELoss-8.752EU ES E1a_E4a0.00
1092005.80CPEB2'protein_coding'514AELoss-6.072EU CE I3_AR30
1102015.79HN1'protein_coding'512AELoss-15.443EU AB E7_Da100.00
1112025.78KCNN4'protein_coding'211AELoss-7.252EU ES E5a_E7a0.00
1122055.77A2LD1'protein_coding'25AELoss-11.192AB CE I2_AR100
1132065.76FOLR2'protein_coding'212AEGain104.6615EU AB ER2a72.73
1142085.76PLEKHA4'protein_coding'220AELoss-6.359EU CE I7_AR185.71
1152105.75RBKS'protein_coding'18AELoss-296.943EU AB CE I1_AR10
1162175.69ZNF682'protein_coding'37AELoss-8.842EU E3a_E4a0.00
1172185.69NFIC'protein_coding'514AELoss-6.977EU CE I6_AR180.00
1182215.69AUP1'protein_coding'217AELoss-8.768EU ES AB E3a_E6a100.00
1192225.68HLA-A'protein_coding'723AEGain53.263EU AB E8b_E9a100.00
1202235.67KIAA1033'protein_coding'234AELoss-8.811EU E24a_E25a0
1212245.67TMEM50A'protein_coding'17AELoss-10.791ES E2a_E4a0
1222255.66GTF2I'protein_coding'335AELoss-10.901ES E30a_E32a0
1232285.65AC005000.2'pseudogene'12AELoss-12.982IR I10
1242305.65IGHA2'IG_C_gene'25AELoss-622.529EU AB CE E3a_E4a60.00
1252315.64ICA1'protein_coding'931AELoss-2.1011EU ES AB E12_Db57.14
1262325.64TK1'protein_coding'210AEGain2.632EU AB E5_Da0
1272335.63RBM5'protein_coding'227AELoss-8.677ES AB IR CE E16a_E18a0.00
1282345.63NUMB'protein_coding'410AELoss-9.015EU ES ER9a75.00
1292355.63GCSH'protein_coding'15AELoss-6.252EU E2a_E3a100.00
1302385.62SYTL3'protein_coding'321AELoss-5.335EU IR I16_AR10
1312395.61MAP3K12'protein_coding'115AELoss-10.3120EU AB IR CE I6_AR166.67
1322405.60RAP1B'protein_coding'210AELoss-11.864EU CE E6a_E7a50.00
1332415.60AIF1'protein_coding'59AEGain101.6010EU AB E3a_E4b87.50
1342425.60MND1'protein_coding'18AEGain7.572ES CE I4_AR10
1352435.60ESR2'protein_coding'614AELoss-9.087EU CE I9_SR40
1362445.59ERO1LB'protein_coding'320AELoss-7.302EU ES E1a_E3a100.00
1372465.58NCALD'protein_coding'511AEGain8.203EU ES CE ER4a0.00
1382485.58KIF15'protein_coding'236AEGain9.741AB E24_Aa0
1392505.57HNRNPH3'protein_coding'212AELoss-11.436EU ES AB E2a_E5a25.00
1402515.57AB019439.1'IG_V_gene'12DELoss-47.471EU AB019439.10
1412525.57PSMA8'protein_coding'29AELoss-7.781CE I4_AR10
1422545.56VPS53'protein_coding'326AELoss-24.172CE I5_AR10
1432575.54LEMD3'protein_coding'113AELoss-9.982CE I1_SR10
1442585.53HIST1H3H'protein_coding'23AELoss-28.1113EU AB IR I1_AR10
1452605.52TTLL3'protein_coding'830AEGain6.256EU ES AB E14_Da0.00
1462625.52SGK1'protein_coding'418AEGain11.274EU ES E2a_E3a0.00
1472655.51AC007000.2'protein_coding'18AELoss-8.583AB CE E2_Aa0
1482695.49ZC3H6'protein_coding'216AELoss-9.314EU AB CE E1_Da0.00
1492715.48UHRF1'protein_coding'219AEGain4.142EU AB E2_Ab0
1502735.47CHCHD10'protein_coding'27AEGain6.431EU ER1a0
1512755.47SAR1A'protein_coding'619AELoss-9.424EU ES E1a_E4b33.33
1522765.46RWDD1'protein_coding'39AELoss-7.135EU E2a_E3a75.00
1532795.43BRDG1'protein_coding'211AELoss-8.341ES E3a_E5a0
1542825.42LY75'protein_coding'443AELoss-3.715EU ES AB CE I1_SR10.00
1552835.42ZNF85'protein_coding'26AELoss-7.561EU E3a_E4a0
1562855.41FUSIP1'protein_coding'615AELoss-10.142AB E1_Ad0
1572875.39AC004053.1'protein_coding'432AELoss-8.852EU ER2b0.00
1582885.39GMDS'protein_coding'213AELoss-11.355EU CE I9_AR1250.00
1592905.39SLCO3A1'protein_coding'110AEGain3.922EU AB E9_Da0
1602915.38CDC42'protein_coding'411AELoss-9.853EU E7a_E8a50.00
1612945.38HERC2'protein_coding'193AELoss-8.876EU AB CE I2_AR633.33
1622955.38C7orf28B'protein_coding'115AELoss-10.235EU ER6a0.00
1632965.38TADA2L'protein_coding'321AELoss-30.391CE I11_AR60
1642975.37VPS11'protein_coding'117AELoss-11.353EU E2a_E3a100.00
1652985.36IGHM'IG_C_gene'26DELoss-40.994EU AB IGHM50.00
1662995.35ZNF619'protein_coding'27AELoss-5.913EU ER5a50.00
1673005.34HNRNPA1'protein_coding'213AELoss-44.283EU E3a_E4a50.00
1683045.33EEF1A1'protein_coding'619AELoss-7.643EU AB E7a_E8a0.00
1693055.32RGS2'protein_coding'15DELoss-40.041EU RGS20
1703065.32CAPG'protein_coding'520DEGain19.132EU CAPG100.00
1713075.32PICALM'protein_coding'523AEGain17.729EU ES ER18a87.50
1723085.32AEBP2'protein_coding'313AELoss-25.666EU AB CE I1_SR10.00
1733105.31ZNF410'protein_coding'314AELoss-23.131ES E9a_E11a0
1743115.31CASK'protein_coding'835AELoss-5.278CE I5_AR50
1753145.30GBA3'protein_coding'15AELoss-7.2117IR I1_SR170
1763185.29KIF18B'protein_coding'219AEGain2.9210EU AB IR E14_Da66.67
1773195.28FAM48A'protein_coding'330AELoss-7.2210EU AB E24a_E25a62.50
1783215.28UNC93B1'protein_coding'112AELoss-10.431EU E7a_E8a0
1793225.28C18orf1'protein_coding'59AELoss-6.9411EU ES AB CE I5_AR180.00
1803235.28ANUBL1'protein_coding'719AEGain7.906AB CE E14_Aa0
1813245.27ZCCHC6'protein_coding'735AELoss-24.932EU AB E2_Da0
1823265.27STAC3'protein_coding'112AEGain2.614EU AB E6_Aa50.00
1833275.26KCNQ5'protein_coding'727AEGain4.148EU AB CE I1_AR3225.00
1843295.26CD3D'protein_coding'25DEGain18.452EU ES CD3D100.00
1853305.26HIST1H4H'protein_coding'23AEGain5.376EU AB ER2a75.00
1863325.25ICAM2'protein_coding'15AEGain23.052AB CE E2_Aa0
1873365.24AC093520.4'protein_coding'12AEGain22.522IR CE Ix0
1883375.24IGHG3'IG_C_gene'610DELoss-37.716EU AB IGHG30.00
1893385.24RPL38'protein_coding'15AELoss-10.533EU E4a_E5a50.00
1903405.24DOCK6'protein_coding'148AELoss-5.943EU CE I39_AR30
1913415.22NDEL1'protein_coding'412AEGain7.001EU E8a_E9a0
1923425.22KIAA1586'protein_coding'14AELoss-6.601EU E1a_E2a0
1933435.22PLEKHK1'protein_coding'417AELoss-6.2611EU AB ER4a75.00
1943445.21ALKBH2'protein_coding'14AEGain8.382ES AB E1_Da0
1953455.21BOLA1'protein_coding'38AELoss-16.365EU AB E2_Aa0.00
1963475.21MRPS5'protein_coding'213AEGain9.482ES CE I7_AR20
1973485.20POLE2'protein_coding'119AEGain7.051AB E19_Aa0
1983575.18AC005726.1'pseudogene'12AELoss-9.831AB E1_Da0
1993585.17CUGBP1'protein_coding'517AELoss-25.731EU E14a_E15a0
2003645.17CREB5'protein_coding'616AELoss-8.752CE I1_AR30
2013655.14RAPGEF1'protein_coding'837AELoss-19.635EU ES CE I13_AR133.33
2023685.13FILIP1L'protein_coding'410AELoss-2.302EU ER5a0.00
2033715.11CCDC90B'protein_coding'19AELoss-5.611EU E1a_E2a0
2043725.11FKBP11'protein_coding'16AEGain7.332EU AB E5_Da0
2053735.11NCK1'protein_coding'14AEGain32.061CE I2_AR20
2063745.11BCAR3'protein_coding'418AEGain3.272EU E2a_E3a0.00
2073755.11CCDC125'protein_coding'417AELoss-9.312IR I4_SR10
2083805.10ZNF808'protein_coding'14AELoss-8.651CE I1_AR40
2093815.09ZCCHC10'protein_coding'25AELoss-8.681ES E3a_E5a0
2103825.09C7orf44'protein_coding'413AEGain24.031AB E7_Aa0
2113835.09ATXN7L1'protein_coding'318AELoss-6.295EU I5_SR1166.67
2123855.08MTMR1'protein_coding'321AELoss-7.921EU E2a_E3a0
2133865.06HSPB11'protein_coding'412AELoss-6.599EU AB IR CE I1_AR20
2143875.06OSBPL9'protein_coding'835AEGain9.224EU ES ER1a0.00
2153885.06RAB22A'protein_coding'17AELoss-7.642CE I2_AR10
2163895.06SCOTIN'protein_coding'211AEGain7.074EU CE E3a_E4a100.00
2173915.05SH3TC1'protein_coding'322AELoss-28.115EU ES IR CE I13_AR10.00
2183925.05NLRC5'protein_coding'351AELoss-5.251EU E32a_E33a0
2193945.04CTBP2'protein_coding'314AELoss-6.1017EU ES AB E2a_E3a73.33
2203955.04RGS16'protein_coding'15DELoss-32.925IR RGS160
2213975.04SDHC'protein_coding'36AELoss-10.062EU ES ENST00000342751100.00
2224005.02CLEC16A'protein_coding'432AELoss-6.596EU AB E22_Da100.00
2234015.02CENPO'protein_coding'311AEGain6.076EU AB E8_Aa100.00
2244025.02COBLL1'protein_coding'521AELoss-4.665EU E9a_E10a75.00
2254035.02USMG5'protein_coding'513AELoss-7.923EU ES E1a_E3a0.00
2264055.01ZDHHC20'protein_coding'322AELoss-5.794EU IR Ix100.00
2274075.01SH2D3C'protein_coding'516AEGain7.761CE I2_AR30
2284085.00MAML1'protein_coding'28AELoss-8.383ES AB CE E2_Da0
2294105.00MBNL1'protein_coding'612AELoss-7.603EU E6a_E7a100.00
2304115.00ARG2'protein_coding'18AEGain3.7619EU AB IR E6_Da91.67
2314134.99LAGE3'protein_coding'25AEGain20.202EU AB E2_Db0
2324144.99AFF3'protein_coding'429AELoss-7.885EU ES AB CE E1a_E5a50.00
2334154.99IGLV6-57'IG_V_gene'12DELoss-31.801EU IGLV6-570
2344174.99PGAM1'protein_coding'14AELoss-21.503EU E1a_E2a0.00
2354184.99STAG3'protein_coding'440AEGain33.426EU AB E4_Da50.00
2364194.98WDR32'protein_coding'39AELoss-6.422AB E6_Da0
2374244.96MS4A7'protein_coding'27AELoss-7.4010EU AB IR CE E3a_E4a100.00
2384294.94TPP2'protein_coding'433AELoss-7.106EU ES AB E2a_E3a33.33
2394304.94SERP2'protein_coding'35AEGain6.652EU ER4a0.00
2404314.94LRAP'protein_coding'219AEGain6.188EU AB CE E13_Da0.00
2414334.93NDUFA3'protein_coding'512AEGain2.332EU ENST00000391764100.00
2424344.93FAHD2A'protein_coding'18AEGain8.005AB CE I5_AR30
2434354.93KIAA0430'protein_coding'332AELoss-8.502ES E24a_E27a0.00
2444374.93DOCK9'protein_coding'1072AEGain7.769EU ES E3a_E4a12.50
2454384.92FOS'protein_coding'14DELoss-30.366EU AB IR FOS0.00
2464404.92METTL2B'protein_coding'19AELoss-8.901AB E1_Da0
2474424.91ZNF431'protein_coding'15AELoss-7.801AB E2_Da0
2484444.91GTF2H2B'protein_coding'117AELoss-6.223EU ER5a0.00
2494464.90KBTBD4'protein_coding'412AELoss-8.281AB E4_Da0
2504474.90VAV3'protein_coding'228AELoss-9.045EU ES CE I1_SR10.00
2514494.90CLSTN1'protein_coding'319AEGain5.555EU ER11a75.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1159.53SEPP1'protein_coding'14DEGain739.210N/ASEPP1N/A
2179.26CXCL9'protein_coding'14DEGain611.180N/ACXCL9N/A
3218.72CCL19'protein_coding'26DEGain422.860N/ACCL19N/A
4228.68LUM'protein_coding'13DEGain410.620N/ALUMN/A
5238.63APOE'protein_coding'14DEGain395.340N/AAPOEN/A
6308.17BGN'protein_coding'211DEGain287.150N/ABGNN/A
7328.01SLC40A1'protein_coding'18DEGain257.260N/ASLC40A1N/A
8338.00SPARC'protein_coding'110DEGain256.140N/ASPARCN/A
9387.88CCL21'protein_coding'26DEGain234.880N/ACCL21N/A
10417.83APOC1'protein_coding'15DEGain227.280N/AAPOC1N/A
11427.81ITGB7'protein_coding'216AEGain20.006EU AB IR I4_AR10
12437.77COL3A1'protein_coding'254DEGain218.980N/ACOL3A1N/A
13457.71ENPP2'protein_coding'226DEGain209.970N/AENPP2N/A
14477.65COL1A2'protein_coding'254DEGain201.520N/ACOL1A2N/A
15497.57TIMP3'protein_coding'28DEGain190.540N/ATIMP3N/A
16507.57FN1'protein_coding'1050DEGain190.470N/AFN1N/A
17517.57IGFBP7'protein_coding'15DEGain190.440N/AIGFBP7N/A
18527.57A2M'protein_coding'240DEGain190.180N/AA2MN/A
19537.55PLA2G2D'protein_coding'14DEGain186.850N/APLA2G2DN/A
20547.54C3'protein_coding'141DEGain185.930N/AC3N/A
21577.40IGHV4-31'IG_C_gene'27AEGain3.823EU E4a_E5a0.00
22587.38HLA-DRB5'protein_coding'27AEGain16.462EU E3a_E4a0.00
23597.35MMP9'protein_coding'113DEGain163.390N/AMMP9N/A
24607.34C1QB'protein_coding'13DEGain162.520N/AC1QBN/A
25617.34IGHE'IG_C_gene'211DEGain162.450N/AIGHEN/A
26647.33AC022210.8'pseudogene'13AEGain20.662ES AB E1_Da0
27667.29SERPING1'protein_coding'617DEGain156.640N/ASERPING1N/A
28707.23POSTN'protein_coding'524DEGain149.700N/APOSTNN/A
29717.19LYZ'protein_coding'14DEGain145.860N/ALYZN/A
30757.17CCL2'protein_coding'13DEGain143.820N/ACCL2N/A
31807.09COL1A1'protein_coding'151DEGain136.660N/ACOL1A1N/A
32817.09SC-9C5.12'protein_coding'35AEGain4.4217EU ES AB IR I1_SR350.00
33827.07NR4A2'protein_coding'314AEGain3.946EU AB CE I1_AR20.00
34847.03FSTL1'protein_coding'111DEGain130.950N/AFSTL1N/A
35857.01RARRES1'protein_coding'16DEGain128.760N/ARARRES1N/A
36867.01SPARCL1'protein_coding'111DEGain128.630N/ASPARCL1N/A
37916.95C1QA'protein_coding'311DEGain123.640N/AC1QAN/A
38936.94GPNMB'protein_coding'314DEGain122.780N/AGPNMBN/A
39966.87CTSL1'protein_coding'414DEGain117.000N/ACTSL1N/A
40986.83C1QC'protein_coding'37DEGain113.700N/AC1QCN/A
411006.79MS4A6A'protein_coding'17DEGain110.850N/AMS4A6AN/A
421026.74TMEM176B'protein_coding'29DEGain107.040N/ATMEM176BN/A
431036.72CCL18'protein_coding'13DEGain105.150N/ACCL18N/A
441046.71THY1'protein_coding'14DEGain104.610N/ATHY1N/A
451076.67ADAMDEC1'protein_coding'215DEGain101.770N/AADAMDEC1N/A
461096.64ACYP1'protein_coding'24AEGain8.667EU AB IR I3_AR2100.00
471116.63DCN'protein_coding'610DEGain99.310N/ADCNN/A
481176.57CSF1R'protein_coding'224DEGain95.200N/ACSF1RN/A
491186.54RPL9'protein_coding'18AEGain2.0312EU AB IR E6a_E7a60.00
501246.41MAG'protein_coding'314AEGain42.115EU E10a_E11a75.00
511256.39HLA-DQB2'protein_coding'49AEGain2.636EU ER5a40.00
521266.39COL6A1'protein_coding'135DEGain83.860N/ACOL6A1N/A
531276.38PLA2G7'protein_coding'112DEGain83.370N/APLA2G7N/A
541286.37TIMP1'protein_coding'411DEGain82.710N/ATIMP1N/A
551306.35C9orf86'protein_coding'625AEGain12.491AB E1_Ab0
561326.32C1S'protein_coding'634DEGain80.140N/AC1SN/A
571346.31MNDA'protein_coding'17DEGain79.130N/AMNDAN/A
581356.30IFITM3'protein_coding'27DEGain32.994EU AB IFITM3100.00
591376.27FABP4'protein_coding'14DEGain77.340N/AFABP4N/A
601386.26IL18'protein_coding'16DEGain76.620N/AIL18N/A
611406.24RASSF4'protein_coding'515DEGain75.710N/ARASSF4N/A
621416.24TMEM176A'protein_coding'17DEGain75.570N/ATMEM176AN/A
631426.22COL4A1'protein_coding'467DEGain74.430N/ACOL4A1N/A
641436.22EFEMP1'protein_coding'416DEGain74.390N/AEFEMP1N/A
651446.22AQP1'protein_coding'410DEGain74.310N/AAQP1N/A
661466.20OR2I1P'unprocessed_pseudogene'11DEGain73.310N/AOR2I1PN/A
671496.18EXOSC8'protein_coding'315AEGain13.046EU AB IR E4_Da100.00
681556.13COL4A2'protein_coding'461DEGain70.220N/ACOL4A2N/A
691596.10MMP2'protein_coding'113DEGain68.820N/AMMP2N/A
701616.09PTGDS'protein_coding'310DEGain67.890N/APTGDSN/A
711626.08CD14'protein_coding'24DEGain67.720N/ACD14N/A
721646.05MGP'protein_coding'14DEGain66.300N/AMGPN/A
731676.02SLCO2B1'protein_coding'214DEGain64.860N/ASLCO2B1N/A
741686.01COL6A2'protein_coding'533DEGain64.510N/ACOL6A2N/A
751696.01GZMK'protein_coding'15DEGain64.440N/AGZMKN/A
761706.01PDCD7'protein_coding'29AEGain12.427EU AB IR I4_AR10
771716.00IL33'protein_coding'17DEGain64.160N/AIL33N/A
781775.95TCN2'protein_coding'314DEGain61.760N/ATCN2N/A
791785.95AC140077.17'protein_coding'110DEGain61.620N/AAC140077.17N/A
801795.94CCDC80'protein_coding'18DEGain61.450N/ACCDC80N/A
811805.93MFAP4'protein_coding'28DEGain61.180N/AMFAP4N/A
821815.93NNMT'protein_coding'13DEGain60.980N/ANNMTN/A
831825.93C7'protein_coding'118DEGain60.830N/AC7N/A
841855.90GZMA'protein_coding'15DEGain59.730N/AGZMAN/A
851865.90CST3'protein_coding'38DEGain59.630N/ACST3N/A
861875.89UCHL3'protein_coding'210AEGain14.792AB CE E9_Da0
871905.89NCOA4'protein_coding'516AEGain41.231ES E2a_E4a0
881925.87SERPINF1'protein_coding'18DEGain58.530N/ASERPINF1N/A
891935.86AAAS'protein_coding'217AEGain8.943AB IR I10
901945.83TYROBP'protein_coding'15DEGain57.000N/ATYROBPN/A
911955.83ACOT7'protein_coding'615AEGain4.782EU CE I3_AR10
921965.83DAB2'protein_coding'215DEGain56.880N/ADAB2N/A
932035.78IGFBP3'protein_coding'310DEGain54.980N/AIGFBP3N/A
942065.76FOLR2'protein_coding'212AEGain104.6615EU AB ER2a72.73
952075.76CYP27A1'protein_coding'19DEGain54.120N/ACYP27A1N/A
962095.75CTHRC1'protein_coding'27DEGain53.990N/ACTHRC1N/A
972115.74TNC'protein_coding'528DEGain53.560N/ATNCN/A
982125.74SFRP4'protein_coding'16DEGain53.520N/ASFRP4N/A
992145.73CALD1'protein_coding'417DEGain53.260N/ACALD1N/A
1002155.73TIMD4'protein_coding'313DEGain53.200N/ATIMD4N/A
1012205.69ABI3BP'protein_coding'567DEGain51.610N/AABI3BPN/A
1022225.68HLA-A'protein_coding'723AEGain53.263EU AB E8b_E9a100.00
1032295.65SLAMF8'protein_coding'25DEGain50.140N/ASLAMF8N/A
1042325.64TK1'protein_coding'210AEGain2.632EU AB E5_Da0
1052365.62C2'protein_coding'621DEGain49.170N/AC2N/A
1062375.62CLIC2'protein_coding'27DEGain49.160N/ACLIC2N/A
1072415.60AIF1'protein_coding'59AEGain101.6010EU AB E3a_E4b87.50
1082425.60MND1'protein_coding'18AEGain7.572ES CE I4_AR10
1092455.58CFH'protein_coding'425DEGain47.900N/ACFHN/A
1102465.58NCALD'protein_coding'511AEGain8.203EU ES CE ER4a0.00
1112475.58GIMAP4'protein_coding'13DEGain47.840N/AGIMAP4N/A
1122485.58KIF15'protein_coding'236AEGain9.741AB E24_Aa0
1132495.57DNAJC5B'protein_coding'16DEGain47.600N/ADNAJC5BN/A
1142555.55COL6A3'protein_coding'850DEGain46.870N/ACOL6A3N/A
1152565.55BCL2'protein_coding'24DEGain46.810N/ABCL2N/A
1162595.53CYBRD1'protein_coding'36DEGain46.060N/ACYBRD1N/A
1172605.52TTLL3'protein_coding'830AEGain6.256EU ES AB E14_Da0.00
1182615.52CYFIP1'protein_coding'131DEGain45.950N/ACYFIP1N/A
1192625.52SGK1'protein_coding'418AEGain11.274EU ES E2a_E3a0.00
1202635.52TIMP2'protein_coding'15DEGain45.930N/ATIMP2N/A
1212645.51IGFBP5'protein_coding'14DEGain45.720N/AIGFBP5N/A
1222665.50FPR3'protein_coding'12DEGain45.310N/AFPR3N/A
1232685.49SOD3'protein_coding'12DEGain44.950N/ASOD3N/A
1242705.49LILRB4'protein_coding'522DEGain44.810N/ALILRB4N/A
1252715.48UHRF1'protein_coding'219AEGain4.142EU AB E2_Ab0
1262725.48SAMD9L'protein_coding'27DEGain44.620N/ASAMD9LN/A
1272735.47CHCHD10'protein_coding'27AEGain6.431EU ER1a0
1282745.47CXCL12'protein_coding'610DEGain44.430N/ACXCL12N/A
1292785.46PLAU'protein_coding'313DEGain43.870N/APLAUN/A
1302805.43CMKLR1'protein_coding'26DEGain43.230N/ACMKLR1N/A
1312845.42ANTXR1'protein_coding'628DEGain42.690N/AANTXR1N/A
1322865.40SDC3'protein_coding'39DEGain42.230N/ASDC3N/A
1332905.39SLCO3A1'protein_coding'110AEGain3.922EU AB E9_Da0
1342925.38TNFRSF1A'protein_coding'110DEGain41.730N/ATNFRSF1AN/A
1352935.38DPT'protein_coding'14DEGain41.680N/ADPTN/A
1363015.33TNFSF13B'protein_coding'16DEGain40.330N/ATNFSF13BN/A
1373025.33DPYSL3'protein_coding'215DEGain40.260N/ADPYSL3N/A
1383035.33ISLR'protein_coding'24DEGain40.180N/AISLRN/A
1393065.32CAPG'protein_coding'520DEGain19.132EU CAPG100.00
1403075.32PICALM'protein_coding'523AEGain17.729EU ES ER18a87.50
1413095.32TSPAN7'protein_coding'210DEGain39.940N/ATSPAN7N/A
1423125.31TAGLN'protein_coding'310DEGain39.690N/ATAGLNN/A
1433135.30FOXP3'protein_coding'315DEGain39.390N/AFOXP3N/A
1443155.29SH2D1A'protein_coding'410DEGain39.260N/ASH2D1AN/A
1453175.29VCAM1'protein_coding'414DEGain39.190N/AVCAM1N/A
1463185.29KIF18B'protein_coding'219AEGain2.9210EU AB IR E14_Da66.67
1473205.28FMOD'protein_coding'13DEGain38.900N/AFMODN/A
1483235.28ANUBL1'protein_coding'719AEGain7.906AB CE E14_Aa0
1493255.27RGL1'protein_coding'323DEGain38.560N/ARGL1N/A
1503265.27STAC3'protein_coding'112AEGain2.614EU AB E6_Aa50.00
1513275.26KCNQ5'protein_coding'727AEGain4.148EU AB CE I1_AR3225.00
1523295.26CD3D'protein_coding'25DEGain18.452EU ES CD3D100.00
1533305.26HIST1H4H'protein_coding'23AEGain5.376EU AB ER2a75.00
1543315.25MXRA5'protein_coding'210DEGain38.180N/AMXRA5N/A
1553325.25ICAM2'protein_coding'15AEGain23.052AB CE E2_Aa0
1563345.24PLVAP'protein_coding'16DEGain37.840N/APLVAPN/A
1573355.24GPR34'protein_coding'38DEGain37.770N/AGPR34N/A
1583365.24AC093520.4'protein_coding'12AEGain22.522IR CE Ix0
1593415.22NDEL1'protein_coding'412AEGain7.001EU E8a_E9a0
1603445.21ALKBH2'protein_coding'14AEGain8.382ES AB E1_Da0
1613475.21MRPS5'protein_coding'213AEGain9.482ES CE I7_AR20
1623485.20POLE2'protein_coding'119AEGain7.051AB E19_Aa0
1633505.20CXCR6'protein_coding'12DEGain36.660N/ACXCR6N/A
1643525.20THBS1'protein_coding'325DEGain36.650N/ATHBS1N/A
1653535.19SERPINE1'protein_coding'19DEGain36.540N/ASERPINE1N/A
1663555.19HTRA1'protein_coding'19DEGain36.460N/AHTRA1N/A
1673605.17COMP'protein_coding'119DEGain36.080N/ACOMPN/A
1683615.17TGFBI'protein_coding'219DEGain36.060N/ATGFBIN/A
1693625.17RNASE1'protein_coding'34DEGain36.050N/ARNASE1N/A
1703665.13LOXL1'protein_coding'28DEGain35.100N/ALOXL1N/A
1713695.13DARC'protein_coding'36DEGain34.910N/ADARCN/A
1723705.12CXCL10'protein_coding'25DEGain34.770N/ACXCL10N/A
1733725.11FKBP11'protein_coding'16AEGain7.332EU AB E5_Da0
1743735.11NCK1'protein_coding'14AEGain32.061CE I2_AR20
1753745.11BCAR3'protein_coding'418AEGain3.272EU E2a_E3a0.00
1763775.10THBS2'protein_coding'224DEGain34.330N/ATHBS2N/A
1773785.10SLC1A3'protein_coding'210DEGain34.320N/ASLC1A3N/A
1783795.10TMEM119'protein_coding'25DEGain34.260N/ATMEM119N/A
1793825.09C7orf44'protein_coding'413AEGain24.031AB E7_Aa0
1803845.08PMP22'protein_coding'39DEGain33.800N/APMP22N/A
1813875.06OSBPL9'protein_coding'835AEGain9.224EU ES ER1a0.00
1823895.06SCOTIN'protein_coding'211AEGain7.074EU CE E3a_E4a100.00
1833935.04TLR4'protein_coding'26DEGain32.960N/ATLR4N/A
1843985.04PRSS23'protein_coding'12DEGain32.810N/APRSS23N/A
1853995.03CPE'protein_coding'213DEGain32.650N/ACPEN/A
1864015.02CENPO'protein_coding'311AEGain6.076EU AB E8_Aa100.00
1874045.01CNN3'protein_coding'29DEGain32.330N/ACNN3N/A
1884065.01AOAH'protein_coding'121DEGain32.270N/AAOAHN/A
1894075.01SH2D3C'protein_coding'516AEGain7.761CE I2_AR30
1904095.00RAMP2'protein_coding'14DEGain32.050N/ARAMP2N/A
1914115.00ARG2'protein_coding'18AEGain3.7619EU AB IR E6_Da91.67
1924125.00FXYD6'protein_coding'18DEGain31.920N/AFXYD6N/A
1934134.99LAGE3'protein_coding'25AEGain20.202EU AB E2_Db0
1944164.99PLA2G2A'protein_coding'28DEGain31.720N/APLA2G2AN/A
1954184.99STAG3'protein_coding'440AEGain33.426EU AB E4_Da50.00
1964214.98PDGFRB'protein_coding'123DEGain31.460N/APDGFRBN/A
1974224.97SILV'protein_coding'112DEGain31.400N/ASILVN/A
1984234.97CETP'protein_coding'216DEGain31.390N/ACETPN/A
1994254.95NRCAM'protein_coding'638DEGain30.990N/ANRCAMN/A
2004284.95LTBP2'protein_coding'136DEGain30.890N/ALTBP2N/A
2014304.94SERP2'protein_coding'35AEGain6.652EU ER4a0.00
2024314.94LRAP'protein_coding'219AEGain6.188EU AB CE E13_Da0.00
2034324.94CILP'protein_coding'19DEGain30.600N/ACILPN/A
2044334.93NDUFA3'protein_coding'512AEGain2.332EU ENST00000391764100.00
2054344.93FAHD2A'protein_coding'18AEGain8.005AB CE I5_AR30
2064364.93VWF'protein_coding'254DEGain30.400N/AVWFN/A
2074374.93DOCK9'protein_coding'1072AEGain7.769EU ES E3a_E4a12.50
2084414.92KCNJ10'protein_coding'12DEGain30.250N/AKCNJ10N/A
2094454.90GNG11'protein_coding'12DEGain29.950N/AGNG11N/A
2104484.90BTNL9'protein_coding'420DEGain29.780N/ABTNL9N/A
2114494.90CLSTN1'protein_coding'319AEGain5.555EU ER11a75.00
2124544.88IGSF6'protein_coding'16DEGain29.510N/AIGSF6N/A
2134594.87FYB'protein_coding'219DEGain29.254EU ES AB FYB50.00
2144604.87C10orf10'protein_coding'12DEGain29.230N/AC10orf10N/A
2154624.86PTRF'protein_coding'37DEGain29.130N/APTRFN/A
2164634.86CSF1'protein_coding'514DEGain29.120N/ACSF1N/A
2174644.86OLFML2B'protein_coding'313DEGain29.090N/AOLFML2BN/A
2184674.86SELP'protein_coding'1026DEGain29.000N/ASELPN/A
2194684.86HS2ST1'protein_coding'415AEGain16.534EU ER10a66.67
2204744.85RAI14'protein_coding'219DEGain28.780N/ARAI14N/A
2214764.84SH3KBP1'protein_coding'928AEGain35.581EU E3a_E4a0
2224774.84PRRX1'protein_coding'25DEGain28.630N/APRRX1N/A
2234824.82CCR1'protein_coding'12DEGain28.300N/ACCR1N/A
2244834.82COL5A2'protein_coding'154DEGain28.270N/ACOL5A2N/A
2254864.81AE000660.1'IG_V_gene'12DEGain28.140N/AAE000660.1N/A
2264954.79AE000659.1'IG_V_gene'12DEGain27.720N/AAE000659.1N/A
2274964.78IL32'protein_coding'613DEGain27.550N/AIL32N/A
2285004.77CD34'protein_coding'411DEGain27.350N/ACD34N/A
2295044.77MCCC1'protein_coding'221AEGain6.513EU ES I14_SR6100.00
2305054.77RPS24'protein_coding'39AEGain8.403EU ES ENST0000036083050.00
2315074.75IL28RA'protein_coding'512AEGain6.1710EU ES AB IR E7_Aa0.00
2325144.74KLRK1'protein_coding'318DEGain26.690N/AKLRK1N/A
2335154.73GPX3'protein_coding'15DEGain26.600N/AGPX3N/A
2345164.73P2RY13'protein_coding'12DEGain26.590N/AP2RY13N/A
2355184.73LGALS3'protein_coding'28DEGain26.564EU ES LGALS333.33
2365194.73TM4SF1'protein_coding'27DEGain26.470N/ATM4SF1N/A
2375204.73SERPINA1'protein_coding'513DEGain26.450N/ASERPINA1N/A
2385264.71IFRD1'protein_coding'215AEGain2.864EU AB E7_Aa100.00
2395284.70JMJD3'protein_coding'122AEGain2.541EU ER1a0
2405294.70LMO7'protein_coding'635AEGain22.775EU ES CE E10a_E13a66.67
2415304.70LILRB1'protein_coding'726AEGain7.552EU AB E2_Ad0
2425314.69LGALS3BP'protein_coding'16DEGain25.870N/ALGALS3BPN/A
2435334.69H19'protein_coding'16DEGain25.850N/AH19N/A
2445354.69RAB32'protein_coding'13DEGain25.810N/ARAB32N/A
2455364.69FCER1G'protein_coding'27DEGain25.790N/AFCER1GN/A
2465384.69CD3E'protein_coding'212DEGain13.443EU ES CD3E100.00
2475394.68SND1'protein_coding'124AEGain6.401AB E15_Aa0
2485404.68TMEM173'protein_coding'18DEGain25.680N/ATMEM173N/A
2495414.68SPTBN1'protein_coding'338AEGain16.084EU ES ER2a66.67
2505424.68C12orf24'protein_coding'17AEGain8.064EU AB IR E6_Aa0
2515474.67ITGAX'protein_coding'230DEGain25.393EU ES ITGAX0.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1117.51HLA-DRB1'protein_coding'16AELoss-1013.612EU E2a_E3a100.00
2215.65ARHGAP15'protein_coding'217AELoss-403.122AB I1_SR10
3315.02BRE'protein_coding'721AELoss-1378.1810EU AB IR I1_AR1100.00
4412.85RPL7'protein_coding'517AELoss-264.9415EU AB CE ER7a72.73
5512.81HLA-B'protein_coding'521AELoss-262.155EU E3a_E4a0.00
6612.15HLA-DQA1'protein_coding'411AELoss-125.637EU AB ENST0000039536325.00
7711.68RPL37'protein_coding'28AELoss-921.418EU ES AB ER2b80.00
8810.92AL671277.5'protein_coding'112AELoss-34.5922EU AB IR CE E7_Aa87.50
9910.70RPL28'protein_coding'15AELoss-1742.915EU ER3a50.00
101010.37RPL23A'protein_coding'39AELoss-200.324EU ER4a100.00
111110.25TOR1AIP1'protein_coding'415AELoss-44.533EU AB E2a_E3a100.00
121210.10IGHG4'IG_C_gene'29AELoss-46.344EU AB CE I4_AR10.00
13139.64FNIP1'protein_coding'320AELoss-54.105EU AB CE I15_AR10
14149.62HLA-DQB1'protein_coding'817AELoss-50.375EU ES AB E8a_E9a0.00
15169.52TBC1D4'protein_coding'221AELoss-21.9126EU AB CE ER9a90.00
16189.23CCDC144B'protein_coding'221AELoss-22.9410EU AB IR CE I7100.00
17199.08PCNP'protein_coding'25AELoss-42.973EU CE I1_SR10
18208.97AHSA2'protein_coding'723AELoss-9.0514EU ES AB IR E11_Db0.00
19248.47TET1'protein_coding'112AELoss-34.581CE I3_AR10
20258.40IGHD'IG_C_gene'27DELoss-338.900N/AIGHDN/A
21268.29TAOK3'protein_coding'225AELoss-42.909EU CE I3_AR50.00
22278.29CCDC152'protein_coding'19AELoss-2.392EU ER4a100.00
23288.25FOSB'protein_coding'14DELoss-303.833EU AB FOSB0
24298.18PRPF18'protein_coding'419AELoss-128.456EU AB E3_Da33.33
25318.14AC004833.1'pseudogene'13AELoss-42.321AB E2_Da0
26347.98AC004448.3'pseudogene'12AELoss-5.144EU AB E2_Aa0.00
27357.96AC112777.7'rRNA_pseudogene'11DELoss-248.850N/AAC112777.7N/A
28367.92EIF4E'protein_coding'29AELoss-31.033EU E5a_E6a50.00
29377.92GAB1'protein_coding'212AELoss-20.792EU CE I3_AR40
30397.88AL163011.3'rRNA_pseudogene'11DELoss-234.840N/AAL163011.3N/A
31407.86HIST1H2AC'protein_coding'35AELoss-15.482EU AB E3_Aa0
32447.74AC091982.3'pseudogene'12AELoss-21.821AB E2_Aa0
33467.67D87015.2'miRNA'11DELoss-204.200N/AD87015.2N/A
34487.64FAM172A'protein_coding'213AELoss-18.377CE I10_AR230
35557.53AC010970.2'processed_pseudogene'11DELoss-184.440N/AAC010970.2N/A
36567.51AC004866.1'rRNA_pseudogene'11DELoss-182.700N/AAC004866.1N/A
37627.34FER'protein_coding'120AELoss-25.302EU CE I2_AR20
38637.34PGS1'protein_coding'319AELoss-27.455EU CE I7_SR20
39657.32PCBD2'protein_coding'25AELoss-23.514IR I3_AR110
40677.29RAB3GAP2'protein_coding'239AELoss-16.311CE I27_AR10
41687.28H3F3A'protein_coding'411AELoss-20.919EU AB E2a_E3b80.00
42697.27MOBKL3'protein_coding'616AELoss-15.175EU ES AB E2a_E5a66.67
43727.18C15orf57'protein_coding'25AELoss-27.682EU ES E1a_E3a100.00
44737.18SCP2'protein_coding'521AELoss-22.545EU CE I12_AR10.00
45747.17AC002480.1'pseudogene'12AELoss-26.303AB IR I1_AR10
46767.14SLC37A1'protein_coding'323AELoss-19.7018AB IR CE E6_Da0
47777.13AC044839.16'rRNA_pseudogene'11DELoss-140.450N/AAC044839.16N/A
48787.12CWC15'protein_coding'18AELoss-19.412EU E6a_E7a0.00
49797.11C1orf71'protein_coding'315AELoss-20.101CE I2_AR10
50837.06AC010468.5'pseudogene'12AELoss-14.491EU ENST000003989810
51877.00WDR66'protein_coding'223AELoss-7.8513EU E16a_E17a66.67
52886.99RP11-488L18.4'unprocessed_pseudogene'14AELoss-7.952EU E3a_E4a0
53896.99TCTN1'protein_coding'827AELoss-2.3913EU ES AB E3_Aa40.00
54906.97IGL@'IG_V_gene'12DELoss-125.590N/AIGL@N/A
55926.95NAPEPLD'protein_coding'16AELoss-9.373EU I1_SR40.00
56946.91MGST3'protein_coding'717AELoss-6.591EU ER10a0
57956.89SSU_rRNA_5'rRNA'11DELoss-118.710N/ASSU_rRNA_5N/A
58976.86SNX6'protein_coding'420AELoss-16.921CE I11_AR20
59996.81AHR'protein_coding'213AELoss-21.173AB IR I11_SR10
601016.76D87024.1'miRNA'11DELoss-108.420N/AD87024.1N/A
611056.69RPS4Y1'protein_coding'17DELoss-103.330N/ARPS4Y1N/A
621066.69GOLGA3'protein_coding'124AELoss-47.414EU AB IR I1_AR20
631086.65RHBDD1'protein_coding'311AELoss-15.473AB CE E1_Da0
641106.63FNBP1'protein_coding'525AELoss-11.659EU ES AB CE E12a_E15b100.00
651126.62HNRPA2B1'protein_coding'519AELoss-44.449EU ES AB IR E8a_E10a33.33
661136.61ANKRD11'protein_coding'622AELoss-15.708EU AB CE I2_SR20
671146.60NLRC3'protein_coding'325AELoss-13.521EU E10a_E11a0
681156.58FAM3C'protein_coding'110AELoss-12.084EU E8a_E9a0.00
691166.58MCTP2'protein_coding'225AELoss-30.758EU ES AB CE I1_AR10.00
701196.53AL122127.6'IG_J_gene'11DELoss-92.710N/AAL122127.6N/A
711206.52AP1G2'protein_coding'223AELoss-16.7812ES AB IR CE E18a_E20a0.00
721216.50SAPS1'protein_coding'124AELoss-68.611EU E17a_E18a0
731226.46ESNA1'protein_coding'522AELoss-19.341CE I12_AR10
741236.41CD40'protein_coding'414AELoss-18.5511EU ES AB ENST0000037227620.00
751296.36NR4A1'protein_coding'615DELoss-82.218EU ES AB NR4A10.00
761316.34NUDT4'protein_coding'15AELoss-12.592EU E3a_E4a100.00
771336.32FBP1'protein_coding'17AELoss-24.9410EU CE I4_AR287.50
781366.30SSU_rRNA_5'rRNA'11DELoss-78.530N/ASSU_rRNA_5N/A
791396.24KCNMA1'protein_coding'1351AELoss-4.227EU ES AB CE I2_AR1850.00
801456.21AC004098.1'pseudogene'12AELoss-14.722AB E1_Da0
811476.19ZDHHC14'protein_coding'210AELoss-7.831I1_SR180
821486.18SIDT1'protein_coding'227AELoss-8.4415EU ES CE I24_AR176.92
831506.18WSB1'protein_coding'29AELoss-12.715ES AB IR E1a_E3a0.00
841516.16AC116654.4'IG_V_gene'12DELoss-71.410N/AAC116654.4N/A
851526.16RPS21'protein_coding'515AELoss-15.119EU AB E3e_E3f57.14
861536.15SMARCA5'protein_coding'124AELoss-11.981ES E13a_E15a0
871546.14WDR68'protein_coding'18AELoss-31.005EU E5a_E6a75.00
881566.13RPL3'protein_coding'417AELoss-417.2510EU AB ER9b50.00
891576.12C7orf10'protein_coding'319AELoss-79.901CE I15_AR100
901586.12IGLV3-21'IG_V_gene'12DELoss-69.650N/AIGLV3-21N/A
911606.09RPS27'protein_coding'37AELoss-35.082EU E3c_E4a0.00
921636.07IGLV2-5'IG_pseudogene'11DELoss-67.130N/AIGLV2-5N/A
931656.04ATAD2B'protein_coding'231AELoss-10.284CE I1_AR10
941666.03FAM126B'protein_coding'112AELoss-13.164CE I1_SR40
951726.00IGHA1'IG_C_gene'13DELoss-64.110N/AIGHA1N/A
961735.99IFITM2'protein_coding'27AELoss-14.061EU E1c_E2a0
971745.98DTWD2'protein_coding'16AELoss-11.712EU CE I1_AR10
981755.97GCDH'protein_coding'112AELoss-47.033IR I6_AR20
991765.96AB019440.1'IG_V_gene'12DELoss-27.222EU AB019440.1100.00
1001835.91ZNF655'protein_coding'47AELoss-7.425EU ES CE I2_AR20.00
1011845.91PHIP'protein_coding'242AELoss-14.784EU AB I4_SR10.00
1021885.89RNGTT'protein_coding'318AELoss-9.943EU AB CE E1a_E2a0
1031895.89ENTPD1'protein_coding'414AELoss-9.242CE I1_AR10
1041915.88PAOX'protein_coding'920AELoss-7.634EU AB E7_Aa0.00
1051975.82DOPEY2'protein_coding'238AELoss-9.276EU I2_SR325.00
1061985.82TMEM156'protein_coding'210AELoss-8.595EU ES E1a_E3a100.00
1071995.82ARMC8'protein_coding'428AELoss-8.752EU ES E1a_E4a0.00
1082005.80CPEB2'protein_coding'514AELoss-6.072EU CE I3_AR30
1092015.79HN1'protein_coding'512AELoss-15.443EU AB E7_Da100.00
1102025.78KCNN4'protein_coding'211AELoss-7.252EU ES E5a_E7a0.00
1112045.78PPP1R15A'protein_coding'13DELoss-54.830N/APPP1R15AN/A
1122055.77A2LD1'protein_coding'25AELoss-11.192AB CE I2_AR100
1132085.76PLEKHA4'protein_coding'220AELoss-6.359EU CE I7_AR185.71
1142105.75RBKS'protein_coding'18AELoss-296.943EU AB CE I1_AR10
1152135.74AC007599.6'rRNA_pseudogene'11DELoss-53.460N/AAC007599.6N/A
1162165.70AC096767.3'IG_V_gene'12DELoss-51.990N/AAC096767.3N/A
1172175.69ZNF682'protein_coding'37AELoss-8.842EU E3a_E4a0.00
1182185.69NFIC'protein_coding'514AELoss-6.977EU CE I6_AR180.00
1192195.69JUN'protein_coding'11DELoss-51.700N/AJUNN/A
1202215.69AUP1'protein_coding'217AELoss-8.768EU ES AB E3a_E6a100.00
1212235.67KIAA1033'protein_coding'234AELoss-8.811EU E24a_E25a0
1222245.67TMEM50A'protein_coding'17AELoss-10.791ES E2a_E4a0
1232255.66GTF2I'protein_coding'335AELoss-10.901ES E30a_E32a0
1242265.66AB019438.1'IG_V_gene'12DELoss-50.410N/AAB019438.1N/A
1252275.65AL122127.6'IG_J_gene'11DELoss-50.300N/AAL122127.6N/A
1262285.65AC005000.2'pseudogene'12AELoss-12.982IR I10
1272305.65IGHA2'IG_C_gene'25AELoss-622.529EU AB CE E3a_E4a60.00
1282315.64ICA1'protein_coding'931AELoss-2.1011EU ES AB E12_Db57.14
1292335.63RBM5'protein_coding'227AELoss-8.677ES AB IR CE E16a_E18a0.00
1302345.63NUMB'protein_coding'410AELoss-9.015EU ES ER9a75.00
1312355.63GCSH'protein_coding'15AELoss-6.252EU E2a_E3a100.00
1322385.62SYTL3'protein_coding'321AELoss-5.335EU IR I16_AR10
1332395.61MAP3K12'protein_coding'115AELoss-10.3120EU AB IR CE I6_AR166.67
1342405.60RAP1B'protein_coding'210AELoss-11.864EU CE E6a_E7a50.00
1352435.60ESR2'protein_coding'614AELoss-9.087EU CE I9_SR40
1362445.59ERO1LB'protein_coding'320AELoss-7.302EU ES E1a_E3a100.00
1372505.57HNRNPH3'protein_coding'212AELoss-11.436EU ES AB E2a_E5a25.00
1382515.57AB019439.1'IG_V_gene'12DELoss-47.471EU AB019439.10
1392525.57PSMA8'protein_coding'29AELoss-7.781CE I4_AR10
1402535.56D87023.1'IG_J_gene'11DELoss-47.320N/AD87023.1N/A
1412545.56VPS53'protein_coding'326AELoss-24.172CE I5_AR10
1422575.54LEMD3'protein_coding'113AELoss-9.982CE I1_SR10
1432585.53HIST1H3H'protein_coding'23AELoss-28.1113EU AB IR I1_AR10
1442655.51AC007000.2'protein_coding'18AELoss-8.583AB CE E2_Aa0
1452675.49EGR4'protein_coding'12DELoss-45.050N/AEGR4N/A
1462695.49ZC3H6'protein_coding'216AELoss-9.314EU AB CE E1_Da0.00
1472755.47SAR1A'protein_coding'619AELoss-9.424EU ES E1a_E4b33.33
1482765.46RWDD1'protein_coding'39AELoss-7.135EU E2a_E3a75.00
1492775.46AB019439.1'IG_V_gene'12DELoss-43.910N/AAB019439.1N/A
1502795.43BRDG1'protein_coding'211AELoss-8.341ES E3a_E5a0
1512815.43IGHJ3P'IG_pseudogene'11DELoss-43.100N/AIGHJ3PN/A
1522825.42LY75'protein_coding'443AELoss-3.715EU ES AB CE I1_SR10.00
1532835.42ZNF85'protein_coding'26AELoss-7.561EU E3a_E4a0
1542855.41FUSIP1'protein_coding'615AELoss-10.142AB E1_Ad0
1552875.39AC004053.1'protein_coding'432AELoss-8.852EU ER2b0.00
1562885.39GMDS'protein_coding'213AELoss-11.355EU CE I9_AR1250.00
1572895.39AB019439.1'IG_V_gene'12DELoss-42.000N/AAB019439.1N/A
1582915.38CDC42'protein_coding'411AELoss-9.853EU E7a_E8a50.00
1592945.38HERC2'protein_coding'193AELoss-8.876EU AB CE I2_AR633.33
1602955.38C7orf28B'protein_coding'115AELoss-10.235EU ER6a0.00
1612965.38TADA2L'protein_coding'321AELoss-30.391CE I11_AR60
1622975.37VPS11'protein_coding'117AELoss-11.353EU E2a_E3a100.00
1632985.36IGHM'IG_C_gene'26DELoss-40.994EU AB IGHM50.00
1642995.35ZNF619'protein_coding'27AELoss-5.913EU ER5a50.00
1653005.34HNRNPA1'protein_coding'213AELoss-44.283EU E3a_E4a50.00
1663045.33EEF1A1'protein_coding'619AELoss-7.643EU AB E7a_E8a0.00
1673055.32RGS2'protein_coding'15DELoss-40.041EU RGS20
1683085.32AEBP2'protein_coding'313AELoss-25.666EU AB CE I1_SR10.00
1693105.31ZNF410'protein_coding'314AELoss-23.131ES E9a_E11a0
1703115.31CASK'protein_coding'835AELoss-5.278CE I5_AR50
1713145.30GBA3'protein_coding'15AELoss-7.2117IR I1_SR170
1723165.29IGLV3-1'IG_V_gene'12DELoss-39.200N/AIGLV3-1N/A
1733195.28FAM48A'protein_coding'330AELoss-7.2210EU AB E24a_E25a62.50
1743215.28UNC93B1'protein_coding'112AELoss-10.431EU E7a_E8a0
1753225.28C18orf1'protein_coding'59AELoss-6.9411EU ES AB CE I5_AR180.00
1763245.27ZCCHC6'protein_coding'735AELoss-24.932EU AB E2_Da0
1773285.26D87023.1'IG_J_gene'11DELoss-38.270N/AD87023.1N/A
1783335.25JUND'protein_coding'11DELoss-38.110N/AJUNDN/A
1793375.24IGHG3'IG_C_gene'610DELoss-37.716EU AB IGHG30.00
1803385.24RPL38'protein_coding'15AELoss-10.533EU E4a_E5a50.00
1813395.24AB019440.1'IG_V_gene'12DELoss-37.680N/AAB019440.1N/A
1823405.24DOCK6'protein_coding'148AELoss-5.943EU CE I39_AR30
1833425.22KIAA1586'protein_coding'14AELoss-6.601EU E1a_E2a0
1843435.22PLEKHK1'protein_coding'417AELoss-6.2611EU AB ER4a75.00
1853455.21BOLA1'protein_coding'38AELoss-16.365EU AB E2_Aa0.00
1863465.21SRP_euk_arch'misc_RNA'11DELoss-36.940N/ASRP_euk_archN/A
1873495.20AB019438.1'IG_V_gene'12DELoss-36.720N/AAB019438.1N/A
1883515.20AC073416.8'IG_V_gene'12DELoss-36.660N/AAC073416.8N/A
1893545.19IGLV4-69'IG_V_gene'12DELoss-36.500N/AIGLV4-69N/A
1903565.18AB019438.1'IG_V_gene'12DELoss-36.210N/AAB019438.1N/A
1913575.18AC005726.1'pseudogene'12AELoss-9.831AB E1_Da0
1923585.17CUGBP1'protein_coding'517AELoss-25.731EU E14a_E15a0
1933595.17IGLC1'IG_C_gene'11DELoss-36.080N/AIGLC1N/A
1943635.17AB019440.1'IG_V_gene'12DELoss-36.000N/AAB019440.1N/A
1953645.17CREB5'protein_coding'616AELoss-8.752CE I1_AR30
1963655.14RAPGEF1'protein_coding'837AELoss-19.635EU ES CE I13_AR133.33
1973675.13AL122127.6'IG_J_gene'11DELoss-35.090N/AAL122127.6N/A
1983685.13FILIP1L'protein_coding'410AELoss-2.302EU ER5a0.00
1993715.11CCDC90B'protein_coding'19AELoss-5.611EU E1a_E2a0
2003755.11CCDC125'protein_coding'417AELoss-9.312IR I4_SR10
2013765.11HIST1H4C'protein_coding'11DELoss-34.470N/AHIST1H4CN/A
2023805.10ZNF808'protein_coding'14AELoss-8.651CE I1_AR40
2033815.09ZCCHC10'protein_coding'25AELoss-8.681ES E3a_E5a0
2043835.09ATXN7L1'protein_coding'318AELoss-6.295EU I5_SR1166.67
2053855.08MTMR1'protein_coding'321AELoss-7.921EU E2a_E3a0
2063865.06HSPB11'protein_coding'412AELoss-6.599EU AB IR CE I1_AR20
2073885.06RAB22A'protein_coding'17AELoss-7.642CE I2_AR10
2083905.055_8S_rRNA'rRNA'11DELoss-33.140N/A5_8S_rRNAN/A
2093915.05SH3TC1'protein_coding'322AELoss-28.115EU ES IR CE I13_AR10.00
2103925.05NLRC5'protein_coding'351AELoss-5.251EU E32a_E33a0
2113945.04CTBP2'protein_coding'314AELoss-6.1017EU ES AB E2a_E3a73.33
2123955.04RGS16'protein_coding'15DELoss-32.925IR RGS160
2133965.04AC116654.4'IG_V_gene'12DELoss-32.900N/AAC116654.4N/A
2143975.04SDHC'protein_coding'36AELoss-10.062EU ES ENST00000342751100.00
2154005.02CLEC16A'protein_coding'432AELoss-6.596EU AB E22_Da100.00
2164025.02COBLL1'protein_coding'521AELoss-4.665EU E9a_E10a75.00
2174035.02USMG5'protein_coding'513AELoss-7.923EU ES E1a_E3a0.00
2184055.01ZDHHC20'protein_coding'322AELoss-5.794EU IR Ix100.00
2194085.00MAML1'protein_coding'28AELoss-8.383ES AB CE E2_Da0
2204105.00MBNL1'protein_coding'612AELoss-7.603EU E6a_E7a100.00
2214144.99AFF3'protein_coding'429AELoss-7.885EU ES AB CE E1a_E5a50.00
2224154.99IGLV6-57'IG_V_gene'12DELoss-31.801EU IGLV6-570
2234174.99PGAM1'protein_coding'14AELoss-21.503EU E1a_E2a0.00
2244194.98WDR32'protein_coding'39AELoss-6.422AB E6_Da0
2254204.98AC096767.3'IG_V_gene'12DELoss-31.520N/AAC096767.3N/A
2264244.96MS4A7'protein_coding'27AELoss-7.4010EU AB IR CE E3a_E4a100.00
2274264.95AC009958.3'IG_V_gene'12DELoss-30.970N/AAC009958.3N/A
2284274.95IGLVI-70'IG_pseudogene'12DELoss-30.930N/AIGLVI-70N/A
2294294.94TPP2'protein_coding'433AELoss-7.106EU ES AB E2a_E3a33.33
2304354.93KIAA0430'protein_coding'332AELoss-8.502ES E24a_E27a0.00
2314384.92FOS'protein_coding'14DELoss-30.366EU AB IR FOS0.00
2324394.92RND1'protein_coding'15DELoss-30.330N/ARND1N/A
2334404.92METTL2B'protein_coding'19AELoss-8.901AB E1_Da0
2344424.91ZNF431'protein_coding'15AELoss-7.801AB E2_Da0
2354434.91HSPA6'protein_coding'11DELoss-30.150N/AHSPA6N/A
2364444.91GTF2H2B'protein_coding'117AELoss-6.223EU ER5a0.00
2374464.90KBTBD4'protein_coding'412AELoss-8.281AB E4_Da0
2384474.90VAV3'protein_coding'228AELoss-9.045EU ES CE I1_SR10.00
2394504.89RBM6'protein_coding'121AELoss-19.133EU AB I2_SR10
2404514.89CCDC93'protein_coding'227AELoss-6.033AB E7_Aa0
2414524.88CLIP3'protein_coding'114AELoss-3.542EU CE I7_AR10
2424534.88KIAA0528'protein_coding'228AELoss-4.911EU ER8a0
2434554.88AB019438.1'IG_V_gene'12DELoss-29.440N/AAB019438.1N/A
2444564.88RPL15'protein_coding'26AELoss-6.402EU AB ER2a0
2454574.87IGLV3-16'IG_V_gene'12DELoss-29.340N/AIGLV3-16N/A
2464584.87ZNF276'protein_coding'111AELoss-6.368AB IR I90
2474614.87C11orf79'protein_coding'14AELoss-8.112EU ES E2a_E4a0.00
2484654.86AB019439.1'IG_V_gene'12DELoss-29.030N/AAB019439.1N/A
2494664.86AC110080.2'IG_V_gene'12DELoss-29.010N/AAC110080.2N/A
2504694.85IGLV3-25'IG_V_gene'12DELoss-28.910N/AIGLV3-25N/A
2514704.85IGKV1-5'IG_V_gene'12DELoss-28.911EU IGKV1-50