Distributions of all expression values and Top 1% of expressed Intergenic features for libraries: C42, AR_KnockIn
Download data matrix file (Intergenic x library): IntergenicExpression_v53.txt.gz
Distribution of log2 expression values for library: C42 and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Distribution of log2 expression values for library: AR_KnockIn and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Top 1% of expressed Intergenic features
The following table provides a ranked list of the most highly expressed Intergenic features. Each column corresponds to an expression library. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), followed by the Feature Name (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the log2 expression value 'Exp' for the feature, and the percent expression value '% Exp' ([feature expression/gene expression]*100). For Gene records the percent displayed here represents the percentage of all reads for the library instead. Features that are NOT supported by an EST/mRNA sequence are indicated in bold. For exon junction features the number of exons skipped by the junction is indicated as 'Sn', where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
| RANK | C42 (Gene | Feature | Exp | % Exp) | AR_KnockIn (Gene | Feature | Exp | % Exp) |
| 1 | AC114498.2 AC114498.2 | IG22 | 11.05 | NA% | SSU_rRNA_5 | IG1 | 11.71 | NA% |
| 2 | AC100778.5 SNORD58 | IG27 | 10.41 | NA% | AC100778.5 SNORD58 | IG27 | 11.50 | NA% |
| 3 | AF347015.1 | IG30 | 10.31 | NA% | AC114498.2 AC114498.2 | IG22 | 10.96 | NA% |
| 4 | SSU_rRNA_5 | IG1 | 10.30 | NA% | AF347015.1 | IG30 | 10.77 | NA% |
| 5 | RPL23A TLCD1 | IG41 | 8.99 | NA% | RPL23A TLCD1 | IG41 | 9.82 | NA% |
| 6 | SNORD47 snosnR60_Z15 | IG46 | 8.96 | NA% | FRMD8 hsa-mir-612 | IG10 | 9.66 | NA% |
| 7 | SNORD81 SNORD47 | IG45 | 8.95 | NA% | KIAA1244 AL031003.1 | IG20 | 9.18 | NA% |
| 8 | AC018452.11 DHX36 | IG29 | 8.71 | NA% | SEPT11 CCNI | IG30 | 8.70 | NA% |
| 9 | KIAA1244 AL031003.1 | IG20 | 8.68 | NA% | SNORD47 snosnR60_Z15 | IG46 | 8.49 | NA% |
| 10 | NOL5A IDH3B | IG46 | 8.52 | NA% | SNORD81 SNORD47 | IG45 | 8.38 | NA% |
| 11 | SNORD22 SNORD31 | IG26 | 8.42 | NA% | C14orf167 AL136419.3 | IG49 | 8.21 | NA% |
| 12 | 5S_rRNA PCGF2 | IG35 | 8.38 | NA% | FAM36A RP11-11N7.2 | IG2 | 8.19 | NA% |
| 13 | SNORD29 SNORD28 | IG29 | 8.30 | NA% | ENDOD1 SESN3 | IG31 | 8.15 | NA% |
| 14 | BHLHA15 AC091654.4 | IG32 | 8.25 | NA% | AC037450.6 MMP16 | IG18 | 8.12 | NA% |
| 15 | FAM36A RP11-11N7.2 | IG2 | 8.25 | NA% | SNORD29 SNORD28 | IG29 | 7.98 | NA% |
| 16 | RLBP1L1 ASPH | IG21 | 8.21 | NA% | AC032027.7 IMPAD1 | IG50 | 7.96 | NA% |
| 17 | SNORD31 SNORD30 | IG27 | 8.10 | NA% | SLC25A37 AC051642.5 | IG28 | 7.83 | NA% |
| 18 | EXOSC9 CCNA2 | IG29 | 8.04 | NA% | NFATC3 RBM35B | IG20 | 7.77 | NA% |
| 19 | CCNK AL110504.6 | IG30 | 8.00 | NA% | SNORD22 SNORD31 | IG26 | 7.77 | NA% |
| 20 | AP000753.4 ATL3 | IG48 | 7.93 | NA% | snoR38 ST6GALNAC2 | IG6 | 7.77 | NA% |
| 21 | FRMD8 hsa-mir-612 | IG10 | 7.84 | NA% | LGALS8 HEATR1 | IG35 | 7.76 | NA% |
| 22 | C14orf167 AL136419.3 | IG49 | 7.75 | NA% | PCBP2 MAP3K12 | IG6 | 7.71 | NA% |
| 23 | SNORD28 SNORD27 | IG30 | 7.74 | NA% | MAP1B MRPS27 | IG41 | 7.70 | NA% |
| 24 | TXN2 FOXRED2 | IG14 | 7.72 | NA% | NEK6 PSMB7 | IG42 | 7.66 | NA% |
| 25 | SNORD30 SNORD29 | IG28 | 7.69 | NA% | SAMD4B PAF1 | IG36 | 7.63 | NA% |
| 26 | snosnR60_Z15 SNORD79 | IG47 | 7.56 | NA% | SNORD31 SNORD30 | IG27 | 7.60 | NA% |
| 27 | SAMD4B PAF1 | IG36 | 7.55 | NA% | AC018452.11 DHX36 | IG29 | 7.60 | NA% |
| 28 | PGAM5 5S_rRNA | IG29 | 7.50 | NA% | RABEP1 NUP88 | IG14 | 7.58 | NA% |
| 29 | LGALS8 HEATR1 | IG35 | 7.49 | NA% | CCNK AL110504.6 | IG30 | 7.56 | NA% |
| 30 | RABEP1 NUP88 | IG14 | 7.46 | NA% | SNORD44 SNORD77 | IG50 | 7.55 | NA% |
| 31 | AC032027.7 IMPAD1 | IG50 | 7.45 | NA% | ARIH1 hsa-mir-630 | IG11 | 7.55 | NA% |
| 32 | SNORD44 SNORD77 | IG50 | 7.44 | NA% | AP000753.4 ATL3 | IG48 | 7.54 | NA% |
| 33 | AC020890.22 PIK3CB | IG27 | 7.43 | NA% | 5S_rRNA PCGF2 | IG35 | 7.53 | NA% |
| 34 | SLC25A37 AC051642.5 | IG28 | 7.41 | NA% | AC117834.6 C8orf83 | IG43 | 7.53 | NA% |
| 35 | ENTPD5 | IG1 | 7.38 | NA% | AL513007.5 RNF12 | IG37 | 7.51 | NA% |
| 36 | AC100791.15 TBC1D16 | IG3 | 7.38 | NA% | NOL5A IDH3B | IG46 | 7.46 | NA% |
| 37 | snoR38 ST6GALNAC2 | IG6 | 7.33 | NA% | SNORD116 SNORD116 | IG9 | 7.45 | NA% |
| 38 | SNORD79 SNORD78 | IG48 | 7.31 | NA% | ZKSCAN1 ZSCAN21 | IG18 | 7.38 | NA% |
| 39 | AC117834.6 C8orf83 | IG43 | 7.30 | NA% | SNORD30 SNORD29 | IG28 | 7.31 | NA% |
| 40 | GARNL4 AC097370.10 | IG49 | 7.30 | NA% | SNORD79 SNORD78 | IG48 | 7.30 | NA% |
| 41 | NEK6 PSMB7 | IG42 | 7.28 | NA% | SLC45A3 NUCKS1 | IG22 | 7.29 | NA% |
| 42 | NFATC3 RBM35B | IG20 | 7.24 | NA% | AC007216.2 GSPT1 | IG47 | 7.27 | NA% |
| 43 | SNORD78 SNORD44 | IG49 | 7.23 | NA% | AC100791.15 TBC1D16 | IG3 | 7.26 | NA% |
| 44 | TBCE B3GALNT2 | IG13 | 7.23 | NA% | TPCN1 | IG1 | 7.23 | NA% |
| 45 | DOPEY1 PGM3 | IG31 | 7.20 | NA% | MORC2 AC004542.1 | IG8 | 7.23 | NA% |
| 46 | MPHOSPH8 AL354808.24 | IG48 | 7.15 | NA% | snosnR60_Z15 SNORD79 | IG47 | 7.21 | NA% |
| 47 | AC069257.28 PCYT1A | IG8 | 7.13 | NA% | NFIC AC005551.1 | IG14 | 7.20 | NA% |
| 48 | SLC45A3 NUCKS1 | IG22 | 7.11 | NA% | DOPEY1 PGM3 | IG31 | 7.20 | NA% |
| 49 | SNORD27 SNORD26 | IG31 | 7.08 | NA% | YIPF6 U6 | IG20 | 7.17 | NA% |
| 50 | SNORD24 | IG1 | 7.08 | NA% | AC012652.1 OIP5 | IG44 | 7.12 | NA% |
| 51 | AC002558.1 CDC27 | IG11 | 7.04 | NA% | EXOSC9 CCNA2 | IG29 | 7.09 | NA% |
| 52 | ARIH1 hsa-mir-630 | IG11 | 7.04 | NA% | GAS2 AC006299.1 | IG34 | 7.08 | NA% |
| 53 | CHRAC1 EIF2C2 | IG41 | 7.02 | NA% | EIF4EBP2 NODAL | IG22 | 7.08 | NA% |
| 54 | TPCN1 | IG1 | 7.00 | NA% | GARNL4 AC097370.10 | IG49 | 7.07 | NA% |
| 55 | SNORD116 SNORD116 | IG9 | 6.99 | NA% | ENTPD5 | IG1 | 7.06 | NA% |
| 56 | MFSD4 ELK4 | IG20 | 6.98 | NA% | NOL7 RANBP9 | IG34 | 7.06 | NA% |
| 57 | MMP24 EIF6 | IG25 | 6.96 | NA% | AC113191.13 HGSNAT | IG33 | 7.03 | NA% |
| 58 | MORC2 AC004542.1 | IG8 | 6.95 | NA% | TBCE B3GALNT2 | IG13 | 7.01 | NA% |
| 59 | ZKSCAN1 ZSCAN21 | IG18 | 6.92 | NA% | NSD1 RAB24 | IG15 | 7.00 | NA% |
| 60 | FAM38A AC138028.1 | IG6 | 6.91 | NA% | SNORD24 | IG1 | 7.00 | NA% |
| 61 | NSD1 RAB24 | IG15 | 6.91 | NA% | MFSD4 ELK4 | IG20 | 6.99 | NA% |
| 62 | YIPF6 U6 | IG20 | 6.91 | NA% | SFT2D2 AL009051.1 | IG22 | 6.99 | NA% |
| 63 | SSSCA1 FAM89B | IG15 | 6.91 | NA% | AC069257.28 PCYT1A | IG8 | 6.98 | NA% |
| 64 | NOL7 RANBP9 | IG34 | 6.90 | NA% | MPHOSPH8 AL354808.24 | IG48 | 6.96 | NA% |
| 65 | SNORA76 TEX2 | IG15 | 6.90 | NA% | PTPMT1 KBTBD4 | IG19 | 6.92 | NA% |
| 66 | GSK3B | IG1 | 6.89 | NA% | VPS4A COG8 | IG35 | 6.92 | NA% |
| 67 | CIRBP C19orf24 | IG4 | 6.89 | NA% | AC002558.1 CDC27 | IG11 | 6.90 | NA% |
| 68 | BRI3 BAIAP2L1 | IG34 | 6.88 | NA% | MDM2 CPM | IG48 | 6.90 | NA% |
| 69 | USP14 THOC1 | IG4 | 6.87 | NA% | MARCH6 ROPN1L | IG19 | 6.90 | NA% |
| 70 | EIF4EBP2 NODAL | IG22 | 6.83 | NA% | CHRAC1 EIF2C2 | IG41 | 6.90 | NA% |
| 71 | RPS25 TRAPPC4 | IG23 | 6.82 | NA% | USP14 THOC1 | IG4 | 6.89 | NA% |
| 72 | RAI1 SREBF1 | IG3 | 6.78 | NA% | SNORD27 SNORD26 | IG31 | 6.87 | NA% |
| 73 | PCBP2 MAP3K12 | IG6 | 6.78 | NA% | CIRBP C19orf24 | IG4 | 6.84 | NA% |
| 74 | AL513007.5 RNF12 | IG37 | 6.77 | NA% | CTD-2530H13.2 AL513007.5 | IG36 | 6.83 | NA% |
| 75 | PTPMT1 KBTBD4 | IG19 | 6.75 | NA% | SNORD28 SNORD27 | IG30 | 6.83 | NA% |
| 76 | RPL36 LONP1 | IG13 | 6.73 | NA% | CORT DFFA | IG14 | 6.82 | NA% |
| 77 | ZNRF1 LDHD | IG46 | 6.72 | NA% | SNORD78 SNORD44 | IG49 | 6.79 | NA% |
| 78 | EMG1 LPCAT3 | IG44 | 6.71 | NA% | CYorf15A CYorf15B | IG24 | 6.78 | NA% |
| 79 | AC012652.1 OIP5 | IG44 | 6.68 | NA% | PURA AC011379.7 | IG9 | 6.76 | NA% |
| 80 | MYL6 SMARCC2 | IG32 | 6.68 | NA% | RP11-119B16.1 PANK2 | IG25 | 6.75 | NA% |
| 81 | TAOK1 AC104564.11 | IG9 | 6.68 | NA% | TAOK1 AC104564.11 | IG9 | 6.72 | NA% |
| 82 | AC012363.6 AC012363.6 | IG41 | 6.65 | NA% | PGAM5 5S_rRNA | IG29 | 6.70 | NA% |
| 83 | DOT1L PLEKHJ1 | IG34 | 6.65 | NA% | PANK2 RNF24 | IG26 | 6.69 | NA% |
| 84 | VPS4A COG8 | IG35 | 6.63 | NA% | HIST1H2AI HIST1H3H | IG4 | 6.66 | NA% |
| 85 | MRTO4 AKR7L | IG20 | 6.61 | NA% | PCYOX1 SNRPG | IG3 | 6.66 | NA% |
| 86 | RAD9B PPTC7 | IG17 | 6.59 | NA% | ZNF843 ARMC5 | IG16 | 6.66 | NA% |
| 87 | IGLON5 AC063977.6 | IG32 | 6.57 | NA% | GSTZ1 TMED8 | IG49 | 6.64 | NA% |
| 88 | ZCWPW1 MEPCE | IG31 | 6.57 | NA% | AC010178.40 | IG51 | 6.63 | NA% |
| 89 | PCYOX1 SNRPG | IG3 | 6.57 | NA% | MED28 FAM184B | IG9 | 6.62 | NA% |
| 90 | POLR1E FBXO10 | IG35 | 6.55 | NA% | SNORD64 SNORD116 | IG60 | 6.62 | NA% |
| 91 | MDM2 CPM | IG48 | 6.54 | NA% | AC020890.22 PIK3CB | IG27 | 6.61 | NA% |
| 92 | MRPL51 NCAPD2 | IG12 | 6.54 | NA% | UQCRC2 C16orf65 | IG34 | 6.60 | NA% |
| 93 | BET1L RIC8A | IG4 | 6.54 | NA% | DDX56 TMED4 | IG41 | 6.58 | NA% |
| 94 | MRPS22 COPB2 | IG34 | 6.54 | NA% | LNPEP AC008865.3 | IG45 | 6.58 | NA% |
| 95 | SYNCRIP | IG1 | 6.53 | NA% | AC126544.5 C17orf69 | IG41 | 6.56 | NA% |
| 96 | AC011475.6 ILF3 | IG45 | 6.52 | NA% | NPFF ATF7 | IG9 | 6.54 | NA% |
| 97 | DDX56 TMED4 | IG41 | 6.51 | NA% | RELT FAM168A | IG23 | 6.52 | NA% |
| 98 | AC007216.2 GSPT1 | IG47 | 6.50 | NA% | MRPL42 AC025260.29 | IG10 | 6.52 | NA% |
| 99 | PLP2 PRICKLE3 | IG36 | 6.48 | NA% | SNORD116 SNORD116 | IG8 | 6.51 | NA% |
| 100 | HMHA1 POLR2E | IG45 | 6.47 | NA% | GATC SFRS9 | IG7 | 6.48 | NA% |