Distributions and lists of all significant differential expression values of the type: SilentIntronRegion for comparisons: AR_KnockIn_vs_C42 (p-value < 0.05 after multiple testing correction and Fold-Change > 1.5)


Distribution of log2 differential expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntronRegion

Distribution of all differential expression values that meet the p-value and fold-change cutoff for the feature type: SilentIntronRegion. The total number of significant DE features, as well as the max and min log2 DE observed are noted in the legend. *If you can not see the figure below, click here




Scatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntronRegion

Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntronRegion. Features that are differentially expressed (meet the p-value and fold-change cutoff) are indicated in magenta. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.

Scatter plot of expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntronRegion




SmoothScatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntronRegion

Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntronRegion. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.

SmoothScatter plot of expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntronRegion




Significant differentially expressed SilentIntronRegion features

The following table provides a ranked list of all significant differentially expressed SilentIntronRegion features. Each column corresponds to a pair-wise comparison of two libraries. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the fold-change (FC) of the differential expression event, and the multiple testing corrected p-value for the feature. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).


RANKAR_KnockIn_vs_C42 (Gene | Feature | Links | Values)
1 SLC22A2 | I1_SR1 | (AR_KnockIn) | (C42) | FC = 60.19 | q.value = 1.59e-23
2 NCAM2 | I17_SR1 | (AR_KnockIn) | (C42) | FC = 32.68 | q.value = 7e-37
3 PCDH11Y | I1_SR2 | (AR_KnockIn) | (C42) | FC = 27.82 | q.value = 1.83e-07
4 PCDH11Y | I1_SR3 | (AR_KnockIn) | (C42) | FC = 26.54 | q.value = 1.71e-09
5 TMEFF2 | I7_SR7 | (AR_KnockIn) | (C42) | FC = 26.47 | q.value = 9.12e-07
6 NCAM2 | I17_SR4 | (AR_KnockIn) | (C42) | FC = 26.30 | q.value = 1.45e-52
7 NCAM2 | I17_SR3 | (AR_KnockIn) | (C42) | FC = 25.27 | q.value = 5.56e-54
8 NCAM2 | I17_SR2 | (AR_KnockIn) | (C42) | FC = 22.34 | q.value = 3.29e-96
9 NCAM2 | I17_SR5 | (AR_KnockIn) | (C42) | FC = 21.07 | q.value = 1.51e-28
10 SLC22A3 | I9_SR4 | (AR_KnockIn) | (C42) | FC = 19.21 | q.value = 1.61e-25
11 FAM65B | I15_SR3 | (AR_KnockIn) | (C42) | FC = 18.50 | q.value = 0.000132
12 PPFIA2 | I5_SR4 | (AR_KnockIn) | (C42) | FC = 18.06 | q.value = 1.7e-06
13 REPS2 | I1_SR4 | (AR_KnockIn) | (C42) | FC = 16.96 | q.value = 2.51e-16
14 CD274 | I7_SR1 | (AR_KnockIn) | (C42) | FC = 16.90 | q.value = 0.000335
15 PPFIA2 | I5_SR3 | (AR_KnockIn) | (C42) | FC = 15.57 | q.value = 4.64e-11
16 SLC22A3 | I5_SR4 | (AR_KnockIn) | (C42) | FC = 14.90 | q.value = 9.3e-12
17 BCHE | I2_SR1 | (AR_KnockIn) | (C42) | FC = 14.03 | q.value = 2.21e-12
18 AC004522.3 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -13.88 | q.value = 7.81e-10
19 GRIN3A | I6_SR2 | (AR_KnockIn) | (C42) | FC = -13.37 | q.value = 4.11e-07
20 PPFIA2 | I5_SR5 | (AR_KnockIn) | (C42) | FC = 12.97 | q.value = 0.000335
21 RBPMS2 | I7_SR1 | (AR_KnockIn) | (C42) | FC = -12.74 | q.value = 1.93e-07
22 SLC22A3 | I9_SR1 | (AR_KnockIn) | (C42) | FC = 12.03 | q.value = 1.62e-33
23 GGTLA1 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -12.00 | q.value = 0.000457
24 BX284650.8 | I1_SR6 | (AR_KnockIn) | (C42) | FC = 11.25 | q.value = 0.0158
25 PPFIA2 | I1_SR4 | (AR_KnockIn) | (C42) | FC = 11.23 | q.value = 4.99e-07
26 PPFIA2 | I5_SR2 | (AR_KnockIn) | (C42) | FC = 11.22 | q.value = 2.18e-12
27 ZNF721 | I1_SR3 | (AR_KnockIn) | (C42) | FC = 11.17 | q.value = 0.0158
28 PPFIA2 | I2_SR1 | (AR_KnockIn) | (C42) | FC = 11.09 | q.value = 0.000323
29 PPFIA2 | I6_SR3 | (AR_KnockIn) | (C42) | FC = 10.76 | q.value = 1.31e-06
30 AC004522.3 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -10.65 | q.value = 6.21e-06
31 GRIN3A | I6_SR1 | (AR_KnockIn) | (C42) | FC = -10.28 | q.value = 3.92e-05
32 AC138951.2 | I5_SR1 | (AR_KnockIn) | (C42) | FC = 10.02 | q.value = 1.54e-07
33 PPFIA2 | I6_SR2 | (AR_KnockIn) | (C42) | FC = 9.66 | q.value = 4.99e-07
34 SLC22A3 | I9_SR2 | (AR_KnockIn) | (C42) | FC = 9.62 | q.value = 1.25e-24
35 APC2 | I12_SR1 | (AR_KnockIn) | (C42) | FC = -9.26 | q.value = 5.4e-12
36 SLC22A3 | I10_SR2 | (AR_KnockIn) | (C42) | FC = 9.23 | q.value = 1.01e-07
37 ICAM5 | I1_SR1 | (AR_KnockIn) | (C42) | FC = -9.20 | q.value = 0.00721
38 ANKRD29 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -9.02 | q.value = 8.89e-05
39 IRX4 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -8.65 | q.value = 4.38e-12
40 SLC22A3 | I9_SR3 | (AR_KnockIn) | (C42) | FC = 8.49 | q.value = 2.93e-16
41 SLC22A3 | I9_SR5 | (AR_KnockIn) | (C42) | FC = 8.37 | q.value = 4.18e-18
42 ICAM5 | I10_SR1 | (AR_KnockIn) | (C42) | FC = -7.92 | q.value = 0.000529
43 GPR144 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -7.87 | q.value = 0.0168
44 ANKRD29 | I8_SR2 | (AR_KnockIn) | (C42) | FC = -7.82 | q.value = 0.00128
45 APC2 | I11_SR1 | (AR_KnockIn) | (C42) | FC = -7.78 | q.value = 1.2e-10
46 AC138951.2 | I3_SR3 | (AR_KnockIn) | (C42) | FC = 7.50 | q.value = 0.000231
47 INPP5A | I5_SR1 | (AR_KnockIn) | (C42) | FC = -7.29 | q.value = 3.87e-06
48 ZNF677 | I4_SR3 | (AR_KnockIn) | (C42) | FC = 7.23 | q.value = 0.000146
49 CARHSP1 | I3_SR2 | (AR_KnockIn) | (C42) | FC = -7.13 | q.value = 0.0031
50 TNK2 | I2_SR5 | (AR_KnockIn) | (C42) | FC = -7.00 | q.value = 2.8e-06
51 EIF4G3 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -6.99 | q.value = 0.000154
52 PPFIA2 | I6_SR1 | (AR_KnockIn) | (C42) | FC = 6.89 | q.value = 0.00114
53 CYP4F8 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -6.85 | q.value = 0.0393
54 APC2 | I7_SR1 | (AR_KnockIn) | (C42) | FC = -6.71 | q.value = 0.0393
55 ZNF783 | I5_SR3 | (AR_KnockIn) | (C42) | FC = -6.70 | q.value = 8.73e-06
56 CENPJ | I11_SR1 | (AR_KnockIn) | (C42) | FC = -6.70 | q.value = 0.00515
57 CHRNA10 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -6.61 | q.value = 0.0318
58 PRKY | I3_SR3 | (AR_KnockIn) | (C42) | FC = 6.61 | q.value = 0.00721
59 LPAL2 | I5_SR2 | (AR_KnockIn) | (C42) | FC = 6.44 | q.value = 0.0238
60 PRKY | I3_SR2 | (AR_KnockIn) | (C42) | FC = 6.41 | q.value = 0.0158
61 PPFIA2 | I7_SR1 | (AR_KnockIn) | (C42) | FC = 6.34 | q.value = 0.00132
62 SPSB2 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -6.23 | q.value = 0.00698
63 INPP5A | I6_SR1 | (AR_KnockIn) | (C42) | FC = -6.20 | q.value = 0.000718
64 LUZP2 | I6_SR3 | (AR_KnockIn) | (C42) | FC = 6.15 | q.value = 1.02e-25
65 C8orf82 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -6.15 | q.value = 8.73e-06
66 APC2 | I10_SR1 | (AR_KnockIn) | (C42) | FC = -6.07 | q.value = 3.15e-09
67 MAPK15 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -5.82 | q.value = 1.97e-05
68 XKR6 | I2_SR6 | (AR_KnockIn) | (C42) | FC = -5.72 | q.value = 0.0393
69 RPS4Y1 | I4_SR2 | (AR_KnockIn) | (C42) | FC = 5.60 | q.value = 7.18e-30
70 TRERF1 | I13_SR5 | (AR_KnockIn) | (C42) | FC = -5.52 | q.value = 0.0107
71 RPS4Y1 | I4_SR1 | (AR_KnockIn) | (C42) | FC = 5.35 | q.value = 7.26e-24
72 ZNF44 | I12_SR2 | (AR_KnockIn) | (C42) | FC = 5.34 | q.value = 0.0134
73 FAM71F2 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -5.34 | q.value = 0.0219
74 ARHGEF19 | I10_SR1 | (AR_KnockIn) | (C42) | FC = -5.29 | q.value = 0.00338
75 LAMA3 | I23_SR1 | (AR_KnockIn) | (C42) | FC = -5.27 | q.value = 2.27e-07
76 RPS4Y1 | I4_SR3 | (AR_KnockIn) | (C42) | FC = 5.27 | q.value = 1.68e-24
77 NEK2 | I7_SR3 | (AR_KnockIn) | (C42) | FC = -5.23 | q.value = 2.93e-06
78 SMAD6 | I1_SR3 | (AR_KnockIn) | (C42) | FC = -5.21 | q.value = 0.00102
79 APC2 | I13_SR1 | (AR_KnockIn) | (C42) | FC = -5.12 | q.value = 0.000166
80 PLEKHG4 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -5.11 | q.value = 0.0318
81 MYO6 | I31_SR5 | (AR_KnockIn) | (C42) | FC = 4.93 | q.value = 5.84e-20
82 MAPK15 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -4.91 | q.value = 0.00019
83 RPS4Y1 | I4_SR4 | (AR_KnockIn) | (C42) | FC = 4.88 | q.value = 3.19e-26
84 LRRC61 | I2_SR2 | (AR_KnockIn) | (C42) | FC = -4.88 | q.value = 0.00213
85 SMAD6 | I1_SR1 | (AR_KnockIn) | (C42) | FC = -4.85 | q.value = 0.0219
86 QRICH2 | I18_SR1 | (AR_KnockIn) | (C42) | FC = -4.81 | q.value = 0.0434
87 ZC3HAV1L | I5_SR1 | (AR_KnockIn) | (C42) | FC = -4.73 | q.value = 2.64e-10
88 NEK2 | I7_SR2 | (AR_KnockIn) | (C42) | FC = -4.72 | q.value = 2.93e-06
89 HJURP | I3_SR1 | (AR_KnockIn) | (C42) | FC = -4.67 | q.value = 1.46e-06
90 C16orf84 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -4.63 | q.value = 0.00707
91 TNK2 | I2_SR4 | (AR_KnockIn) | (C42) | FC = -4.49 | q.value = 0.00442
92 EFCAB4A | I1_SR1 | (AR_KnockIn) | (C42) | FC = -4.44 | q.value = 0.00114
93 CENPJ | I11_SR2 | (AR_KnockIn) | (C42) | FC = -4.43 | q.value = 8.62e-05
94 TROAP | I13_SR1 | (AR_KnockIn) | (C42) | FC = -4.39 | q.value = 0.000311
95 TMC6 | I2_SR2 | (AR_KnockIn) | (C42) | FC = -4.25 | q.value = 7.29e-05
96 ZNF385B | I3_SR1 | (AR_KnockIn) | (C42) | FC = -4.23 | q.value = 0.00755
97 TMEM80 | I4_SR2 | (AR_KnockIn) | (C42) | FC = -4.22 | q.value = 0.00112
98 SP2 | I1_SR4 | (AR_KnockIn) | (C42) | FC = -4.21 | q.value = 0.0434
99 AL663102.4 | I3_SR5 | (AR_KnockIn) | (C42) | FC = 4.18 | q.value = 0.0495
100 RGS14 | I9_SR1 | (AR_KnockIn) | (C42) | FC = -4.12 | q.value = 0.027
101 TMC4 | I11_SR1 | (AR_KnockIn) | (C42) | FC = 4.10 | q.value = 0.00538
102 HISPPD2A | I21_SR1 | (AR_KnockIn) | (C42) | FC = -4.01 | q.value = 0.023
103 MYO6 | I31_SR4 | (AR_KnockIn) | (C42) | FC = 3.96 | q.value = 4.94e-15
104 GAS6 | I6_SR1 | (AR_KnockIn) | (C42) | FC = 3.88 | q.value = 0.0418
105 SETD5 | I21_SR1 | (AR_KnockIn) | (C42) | FC = 3.87 | q.value = 0.00393
106 SMAD6 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -3.85 | q.value = 0.00574
107 AP000473.2 C21orf34 | Ix_SR12 | (AR_KnockIn) | (C42) | FC = 3.80 | q.value = 0.0212
108 ZNF783 | I5_SR2 | (AR_KnockIn) | (C42) | FC = -3.76 | q.value = 0.00574
109 GAS6 | I4_SR2 | (AR_KnockIn) | (C42) | FC = 3.72 | q.value = 0.0294
110 MAPK15 | I1_SR1 | (AR_KnockIn) | (C42) | FC = -3.69 | q.value = 0.00943
111 QRICH2 | I18_SR2 | (AR_KnockIn) | (C42) | FC = -3.68 | q.value = 0.0398
112 ALKBH7 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -3.67 | q.value = 0.00574
113 AL583842.40 | I6_SR1 | (AR_KnockIn) | (C42) | FC = 3.67 | q.value = 0.00799
114 ID2 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -3.65 | q.value = 0.0219
115 ADCY3 | I14_SR1 | (AR_KnockIn) | (C42) | FC = -3.51 | q.value = 0.0398
116 XRCC3 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -3.48 | q.value = 0.00943
117 C9orf100 | I9_SR1 | (AR_KnockIn) | (C42) | FC = -3.44 | q.value = 0.0219
118 LYPLAL1 | I3_SR6 | (AR_KnockIn) | (C42) | FC = 3.43 | q.value = 0.0418
119 TNK2 | I2_SR2 | (AR_KnockIn) | (C42) | FC = -3.42 | q.value = 0.0306
120 VAC14 | I19_SR4 | (AR_KnockIn) | (C42) | FC = -3.40 | q.value = 0.0392
121 AURKB | I5_SR1 | (AR_KnockIn) | (C42) | FC = -3.36 | q.value = 0.00093
122 ADCY3 | I18_SR1 | (AR_KnockIn) | (C42) | FC = -3.35 | q.value = 0.0219
123 GNPTAB | I21_SR2 | (AR_KnockIn) | (C42) | FC = -3.34 | q.value = 0.00177
124 IPO13 | I11_SR1 | (AR_KnockIn) | (C42) | FC = -3.31 | q.value = 0.0488
125 GAS6 | I5_SR2 | (AR_KnockIn) | (C42) | FC = 3.30 | q.value = 0.0158
126 TNK2 | I2_SR3 | (AR_KnockIn) | (C42) | FC = -3.28 | q.value = 0.0306
127 CCDC137 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -3.27 | q.value = 0.0488
128 CPSF4 | I6_SR2 | (AR_KnockIn) | (C42) | FC = -3.27 | q.value = 0.00468
129 GAS6 | I5_SR4 | (AR_KnockIn) | (C42) | FC = 3.27 | q.value = 0.00298
130 KAZALD1 | I5_SR1 | (AR_KnockIn) | (C42) | FC = -3.26 | q.value = 0.0083
131 NPDC1 | I1_SR2 | (AR_KnockIn) | (C42) | FC = -3.23 | q.value = 4.46e-12
132 ATAD3A | I12_SR1 | (AR_KnockIn) | (C42) | FC = -3.21 | q.value = 0.0146
133 C9orf100 | I7_SR1 | (AR_KnockIn) | (C42) | FC = -3.15 | q.value = 0.000444
134 NETO1 | I5_SR1 | (AR_KnockIn) | (C42) | FC = 3.14 | q.value = 6.76e-17
135 ZDHHC23 | I6_SR1 | (AR_KnockIn) | (C42) | FC = -3.02 | q.value = 0.026
136 SOLH | I3_SR4 | (AR_KnockIn) | (C42) | FC = -3.02 | q.value = 0.00341
137 C11orf84 | I5_SR2 | (AR_KnockIn) | (C42) | FC = -3.00 | q.value = 0.0158
138 GGPS1 | I2_SR1 | (AR_KnockIn) | (C42) | FC = -3.00 | q.value = 6.54e-06
139 BCAP29 | I6_SR2 | (AR_KnockIn) | (C42) | FC = -2.99 | q.value = 0.0186
140 BCAP29 | I6_SR1 | (AR_KnockIn) | (C42) | FC = -2.93 | q.value = 0.0207
141 ZC3HAV1L | I5_SR2 | (AR_KnockIn) | (C42) | FC = -2.92 | q.value = 1.41e-08
142 ZNF276 | I6_SR2 | (AR_KnockIn) | (C42) | FC = -2.92 | q.value = 0.0429
143 ABCD1 | I1_SR3 | (AR_KnockIn) | (C42) | FC = -2.89 | q.value = 0.0158
144 NIF3L1 | I1_SR1 | (AR_KnockIn) | (C42) | FC = -2.86 | q.value = 0.0452
145 BCAP29 | I8_SR3 | (AR_KnockIn) | (C42) | FC = -2.84 | q.value = 0.00582
146 CBR4 | I4_SR6 | (AR_KnockIn) | (C42) | FC = 2.81 | q.value = 0.0137
147 AC018452.11 | I15_SR1 | (AR_KnockIn) | (C42) | FC = -2.75 | q.value = 1.1e-21
148 PCNT | I44_SR1 | (AR_KnockIn) | (C42) | FC = -2.72 | q.value = 0.0458
149 TANC1 | I5_SR3 | (AR_KnockIn) | (C42) | FC = 2.71 | q.value = 0.00811
150 CDH12 | I6_SR1 | (AR_KnockIn) | (C42) | FC = 2.67 | q.value = 0.000143
151 EIF4G3 | I2_SR2 | (AR_KnockIn) | (C42) | FC = -2.65 | q.value = 0.0458
152 CPNE7 | I11_SR4 | (AR_KnockIn) | (C42) | FC = -2.62 | q.value = 2e-05
153 CPNE7 | I3_SR2 | (AR_KnockIn) | (C42) | FC = -2.58 | q.value = 0.0252
154 RSRC2 | I4_SR1 | (AR_KnockIn) | (C42) | FC = -2.55 | q.value = 0.00312
155 NETO1 | I5_SR2 | (AR_KnockIn) | (C42) | FC = 2.52 | q.value = 4.4e-09
156 RPL7 | I4_SR1 | (AR_KnockIn) | (C42) | FC = -2.51 | q.value = 0.0449
157 KIFC1 | I10_SR1 | (AR_KnockIn) | (C42) | FC = -2.48 | q.value = 0.00312
158 DLG2 | I18_SR2 | (AR_KnockIn) | (C42) | FC = -2.46 | q.value = 8.82e-08
159 AKAP1 | I3_SR1 | (AR_KnockIn) | (C42) | FC = -2.46 | q.value = 0.00131
160 PPRC1 | I7_SR1 | (AR_KnockIn) | (C42) | FC = -2.45 | q.value = 0.0392
161 CPNE7 | I16_SR1 | (AR_KnockIn) | (C42) | FC = -2.45 | q.value = 2.4e-06
162 MID1IP1 | I1_SR2 | (AR_KnockIn) | (C42) | FC = 2.41 | q.value = 1.06e-06
163 CLSPN | I25_SR3 | (AR_KnockIn) | (C42) | FC = -2.41 | q.value = 0.0238
164 AC018692.9 | I1_SR1 | AR_KnockIn | C42 | FC = 2.35 | q.value = 0.0393
165 AC020931.6 | I12_SR1 | (AR_KnockIn) | (C42) | FC = -2.30 | q.value = 0.00332
166 C16orf7 | I1_SR3 | (AR_KnockIn) | (C42) | FC = -2.25 | q.value = 0.0305
167 CBS | I13_SR1 | (AR_KnockIn) | (C42) | FC = -2.22 | q.value = 0.000296
168 AL583842.40 | I6_SR1 | (AR_KnockIn) | (C42) | FC = 2.14 | q.value = 0.00167
169 TMED4 | I4_SR1 | (AR_KnockIn) | (C42) | FC = -2.11 | q.value = 0.00755
170 H2AFV | I5_SR1 | (AR_KnockIn) | (C42) | FC = -2.07 | q.value = 0.0158
171 GNAS GNAS | Ix_SR1 | (AR_KnockIn) | (C42) | FC = -2.03 | q.value = 0.0132
172 NETO1 | I11_SR1 | (AR_KnockIn) | (C42) | FC = 2.03 | q.value = 0.000335
173 C20orf96 | I9_SR1 | (AR_KnockIn) | (C42) | FC = 2.02 | q.value = 0.0242
174 P2RY11 AC020931.6 | Ix_SR2 | (AR_KnockIn) | (C42) | FC = -2.01 | q.value = 0.0238