Distributions and lists of all significant differential expression values of the type: Intergenic for comparisons: AR_KnockIn_vs_C42 (p-value < 0.05 after multiple testing correction and Fold-Change > 1.5)
Distribution of log2 differential expression values for comparison: AR_KnockIn_vs_C42 and data type: Intergenic
Distribution of all differential expression values that meet the p-value and fold-change cutoff for the feature type: Intergenic. The total number of significant DE features, as well as the max and min log2 DE observed are noted in the legend. *If you can not see the figure below, click here
Scatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: Intergenic
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: Intergenic. Features that are differentially expressed (meet the p-value and fold-change cutoff) are indicated in magenta. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
SmoothScatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: Intergenic
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: Intergenic. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
Significant differentially expressed Intergenic features
The following table provides a ranked list of all significant differentially expressed Intergenic features. Each column corresponds to a pair-wise comparison of two libraries. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the fold-change (FC) of the differential expression event, and the multiple testing corrected p-value for the feature. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
| RANK | AR_KnockIn_vs_C42 (Gene | Feature | Links | Values) |
| 1 | AL078639.5 CDR1 | IG27 | (AR_KnockIn) | (C42) | FC = -26.02 | q.value = 1.75e-08 |
| 2 | AC063977.6 ETFB | IG33 | (AR_KnockIn) | (C42) | FC = -7.69 | q.value = 7.76e-05 |
| 3 | HIRIP3 INO80E | IG31 | (AR_KnockIn) | (C42) | FC = -7.64 | q.value = 0.0401 |
| 4 | IGLON5 AC063977.6 | IG32 | (AR_KnockIn) | (C42) | FC = -6.33 | q.value = 1.74e-06 |
| 5 | CYorf15A CYorf15B | IG24 | (AR_KnockIn) | (C42) | FC = 5.74 | q.value = 8.61e-06 |
| 6 | RLBP1L1 ASPH | IG21 | (AR_KnockIn) | (C42) | FC = -5.33 | q.value = 4.99e-18 |
| 7 | GNAL MPPE1 | IG11 | (AR_KnockIn) | (C42) | FC = -4.52 | q.value = 0.044 |
| 8 | BHLHA15 AC091654.4 | IG32 | (AR_KnockIn) | (C42) | FC = -4.41 | q.value = 6.91e-16 |
| 9 | SLC39A1 CREB3L4 | IG8 | (AR_KnockIn) | (C42) | FC = -4.33 | q.value = 0.00741 |
| 10 | SF3A2 AMH | IG36 | (AR_KnockIn) | (C42) | FC = -4.08 | q.value = 0.0109 |
| 11 | AC037450.6 MMP16 | IG18 | (AR_KnockIn) | (C42) | FC = 3.94 | q.value = 7.72e-11 |
| 12 | AC068446.22 U6 | IG28 | (AR_KnockIn) | (C42) | FC = 3.90 | q.value = 0.03 |
| 13 | HIST1H2AI HIST1H3H | IG4 | (AR_KnockIn) | (C42) | FC = 3.82 | q.value = 0.000386 |
| 14 | SNORA42 TTC6 | IG49 | (AR_KnockIn) | (C42) | FC = 3.54 | q.value = 0.0208 |
| 15 | PRAC HOXB13 | IG47 | (AR_KnockIn) | (C42) | FC = 3.54 | q.value = 0.00993 |
| 16 | ENDOD1 SESN3 | IG31 | (AR_KnockIn) | (C42) | FC = 3.49 | q.value = 1.16e-09 |
| 17 | LRP3 SLC7A10 | IG29 | (AR_KnockIn) | (C42) | FC = -3.41 | q.value = 0.0147 |
| 18 | FRMD8 hsa-mir-612 | IG10 | (AR_KnockIn) | (C42) | FC = 3.09 | q.value = 4.46e-25 |
| 19 | RPS25 TRAPPC4 | IG23 | (AR_KnockIn) | (C42) | FC = -3.01 | q.value = 0.000899 |
| 20 | TXN2 FOXRED2 | IG14 | (AR_KnockIn) | (C42) | FC = -2.87 | q.value = 1.74e-06 |
| 21 | APC2 C19orf25 | IG12 | (AR_KnockIn) | (C42) | FC = -2.68 | q.value = 0.0192 |
| 22 | ZCWPW1 MEPCE | IG31 | (AR_KnockIn) | (C42) | FC = -2.57 | q.value = 0.0089 |
| 23 | AC018452.11 DHX36 | IG29 | (AR_KnockIn) | (C42) | FC = -2.44 | q.value = 3.58e-10 |
| 24 | NOL5A IDH3B | IG46 | (AR_KnockIn) | (C42) | FC = -2.37 | q.value = 2.43e-08 |
| 25 | SSU_rRNA_5 | IG1 | (AR_KnockIn) | (C42) | FC = 2.33 | q.value = 5.29e-71 |
| 26 | AC012363.6 AC012363.6 | IG41 | (AR_KnockIn) | (C42) | FC = -2.25 | q.value = 0.0365 |
| 27 | PURA AC011379.7 | IG9 | (AR_KnockIn) | (C42) | FC = 2.21 | q.value = 0.0432 |
| 28 | EXOSC9 CCNA2 | IG29 | (AR_KnockIn) | (C42) | FC = -2.18 | q.value = 4.33e-05 |
| 29 | SNORD28 SNORD27 | IG30 | (AR_KnockIn) | (C42) | FC = -2.12 | q.value = 0.000623 |
| 30 | FAM38A AC138028.1 | IG6 | (AR_KnockIn) | (C42) | FC = -2.07 | q.value = 0.0352 |
| 31 | 5S_rRNA PCGF2 | IG35 | (AR_KnockIn) | (C42) | FC = -2.04 | q.value = 1.05e-05 |