Summary page for 'SEC13L1' (ENSG00000157020) - Project: IRI


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Basic Gene Stats

Species: Human
Gene Name: 'SEC13L1' (HUGO: SEC13)
ALEXA Gene ID: 10320 (ALEXA_hs_53_36o)
EnsEMBL Gene ID: ENSG00000157020
Entrez Gene Record(s): SEC13
Ensembl Gene Record: ENSG00000157020
Evidence: Known Gene
Gene Type: protein_coding
Location: chr3 10317615-10337855 (-): 3p25-p24
Size (bp): 20241
Description: Protein SEC13 homolog (SEC13-related protein)(SEC13-like protein 1) [Source:UniProtKB/Swiss-Prot;Acc:P55735]



Data links for each library (displays expression data in UCSC Genome Browser)

HS578T_DMSO (1939 total reads for 'SEC13L1'). UCSC data links: (C | P)
HS578T_IR (2544 total reads for 'SEC13L1'). UCSC data links: (C | P)
BT474_DMSO (1144 total reads for 'SEC13L1'). UCSC data links: (C | P)
BT474_IR (1740 total reads for 'SEC13L1'). UCSC data links: (C | P)



Link to other genes in the same chromosome region as 'SEC13L1'

chr3_1



Features defined for this gene: 242

Gene: 1
Transcript: 10
ExonRegion: 29
Junction: 112
    KnownJunction: 15
    NovelJunction: 97
Boundary: 34
    KnownBoundary: 11
    NovelBoundary: 23
Intron: 10
ActiveIntronRegion: 17
SilentIntronRegion: 16
Intergenic: 2
ActiveIntergenicRegion: 7
SilentIntergenicRegion: 5



Summary of transcript specific features for 'SEC13L1' (ENSG00000157020)

ENST00000397101:ER4c
ENST00000337354:E1a_E2b
ENST00000397117:ER1h, ER1j, E1c_E3a, E10a_E11b
ENST00000397105:ER7b
ENST00000383801:NA
ENST00000397099:NA
ENST00000397109:E1b_E3a
ENST00000343726:NA
ENST00000397102:E4a_E5a, ER5a
ENST00000350697:ER1a


Summary of known expressed features

Expressed above background

LibraryExon Regions
(Expressed/Total)
Known Junctions
(Expressed/Total)
HS578T_DMSO:20/2910/15
HS578T_IR:20/2910/15
BT474_DMSO:19/299/15
BT474_IR:19/298/15

Detected at any level above 0

LibraryExon Regions
(Detected/Total)
Known Junctions
(Detected/Total)
HS578T_DMSO:29/2913/15
HS578T_IR:29/2912/15
BT474_DMSO:27/2910/15
BT474_IR:28/2911/15


Normalized expression data for each known or novel expressed feature of 'SEC13L1'

The following table summarizes the expression values of all known features of the gene 'SEC13L1' in each library. Known features (i.e. those that correspond to one or more EnsEMBL transcripts) are included regardless of their expression level. Novel features are only reported in this table if they are expressed above the level of intergenic background noise. The 'FID' column reports the unique Feature ID for the gene, transcript, exon region, exon junction, etc. The 'Name' column reports the Feature Name for the feature (e.g. E5a_E6a is the name of an exon junction corresponding to the connection of exons 5 and 6). The 'Type' column reports the type of the feature and may be one of the following: Gene, Transcript, Exon Region, Known Junction, Novel Junction, Known Boundary, Novel Boundary, Silent or Active Intronic Regions, and Silent or Active Intergenic Regions (see our manuscript for more details). The 'Base Count' column reports the number of nucleotide bases for the feature followed by the percent of these that do NOT correspond to repeats and the percent that are known to be protein coding in one or more EnsEMBL transcripts. The 'Supporting ESTs/mRNAs' column reports the number of ESTs and mRNAs that when aligned to the human genome support the expression of a feature (i.e. the sequence alignment coordinates match an exon junction or boundaries of an exon, retained intron, etc.). The 'Conserved Species' column reports the number of 'other' species for which there was at least 1 supporting EST/mRNA alignment. Finally, the remaining columns report the log2 expression value for each feature in each library. Bold values indicate expression above background. Each expression value is also a hyperlink to a view of the feature's corresponding genomic region in the UCSC genome browser. Expression data will automatically be loaded as custom GFF and wiggle tracks.


FIDNameTypeBase Count
(% unmasked |
% coding)
Supporting
Human
ESTs/mRNAs
Conserved
Species
HS578T_DMSO Log2
Expression
HS578T_IR Log2
Expression
BT474_DMSO Log2
Expression
BT474_IR Log2
Expression
G10320SEC13L1Gene3109 (87% | 42%)N/AN/A8.49 (C | P)8.65 (C | P)7.14 (C | P)7.25 (C | P)
T25925ENST00000350697Transcript60 (100% | 0%)N/AN/A2.71 (C | P)3.72 (C | P)0.00 (C | P)2.81 (C | P)
T25928ENST00000397101Transcript189 (7% | 0%)N/AN/A1.75 (C | P)4.33 (C | P)1.60 (C | P)2.36 (C | P)
T25929ENST00000397102Transcript420 (70% | 9%)N/AN/A2.42 (C | P)2.71 (C | P)1.38 (C | P)2.79 (C | P)
T25930ENST00000397105Transcript246 (100% | 55%)N/AN/A2.21 (C | P)2.89 (C | P)1.36 (C | P)0.00 (C | P)
T25927ENST00000397099TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)NA (C | P)
T25926ENST00000383801TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)NA (C | P)
T25923ENST00000337354Transcript62 (100% | 55%)N/AN/A4.51 (C | P)4.86 (C | P)0.00 (C | P)4.03 (C | P)
T25932ENST00000397117Transcript495 (75% | 19%)N/AN/A5.93 (C | P)6.31 (C | P)5.14 (C | P)4.46 (C | P)
T25931ENST00000397109Transcript62 (100% | 50%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
T25924ENST00000343726TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)NA (C | P)
ER184368ER1aExonRegion60 (100% | 0%)002.71 (C | P)3.72 (C | P)0.00 (C | P)2.81 (C | P)
EB255068E1_AbKnownBoundary62 (100% | 0%)300.00 (C | P)4.79 (C | P)0.00 (C | P)3.03 (C | P)
EB255069E1_AcKnownBoundary62 (100% | 0%)610.00 (C | P)0.00 (C | P)0.00 (C | P)3.16 (C | P)
EB255070E1_AdKnownBoundary62 (100% | 0%)730.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
EB255071E1_AeKnownBoundary62 (100% | 0%)820.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
EB255072E1_AfKnownBoundary62 (100% | 2%)817.12 (C | P)7.34 (C | P)6.97 (C | P)6.37 (C | P)
ER184369ER1bExonRegion19 (100% | 0%)076.80 (C | P)7.10 (C | P)5.67 (C | P)5.77 (C | P)
EB255073E1_AgNovelBoundary62 (100% | 5%)108.74 (C | P)9.10 (C | P)7.86 (C | P)7.82 (C | P)
ER184370ER1cExonRegion7 (100% | 0%)288.68 (C | P)9.15 (C | P)7.84 (C | P)7.63 (C | P)
ER184371ER1dExonRegion2 (100% | 0%)559.02 (C | P)9.44 (C | P)8.13 (C | P)8.02 (C | P)
ER184372ER1eExonRegion2 (100% | 0%)559.27 (C | P)9.59 (C | P)8.31 (C | P)8.19 (C | P)
ER184373ER1fExonRegion21 (100% | 0%)559.73 (C | P)10.12 (C | P)8.89 (C | P)8.70 (C | P)
EJ1436105E1a_E2aKnownJunction62 (100% | 5%)404.30 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ1436106E1a_E2bKnownJunction62 (100% | 55%)404.51 (C | P)4.86 (C | P)0.00 (C | P)4.03 (C | P)
EJ1436107E1a_E3aKnownJunction62 (100% | 55%)92010.24 (C | P)10.63 (C | P)9.21 (C | P)9.07 (C | P)
ER184374ER1gExonRegion11 (100% | 27%)6310.17 (C | P)10.64 (C | P)9.33 (C | P)9.16 (C | P)
ER184375ER1hExonRegion9 (100% | 0%)015.95 (C | P)6.71 (C | P)5.53 (C | P)5.11 (C | P)
ER184376ER1iExonRegion170 (100% | 0%)006.58 (C | P)6.02 (C | P)4.60 (C | P)4.59 (C | P)
EB255076E1_DbKnownBoundary62 (100% | 0%)1417.46 (C | P)6.95 (C | P)3.29 (C | P)6.17 (C | P)
EJ1436119E1b_E3aKnownJunction62 (100% | 50%)200.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
ER184377ER1jExonRegion362 (66% | 0%)006.11 (C | P)6.47 (C | P)5.15 (C | P)5.04 (C | P)
EJ1436131E1c_E3aKnownJunction62 (100% | 50%)705.46 (C | P)4.72 (C | P)3.47 (C | P)3.03 (C | P)
ER184378ER2aExonRegion145 (100% | 74%)413.42 (C | P)1.59 (C | P)1.81 (C | P)1.57 (C | P)
EB255079E2_AbKnownBoundary62 (100% | 100%)410.00 (C | P)3.33 (C | P)0.00 (C | P)0.00 (C | P)
ER184379ER2bExonRegion22 (100% | 100%)1015.90 (C | P)6.45 (C | P)1.02 (C | P)3.40 (C | P)
EJ1436141E2a_E3aKnownJunction62 (100% | 100%)1106.04 (C | P)6.30 (C | P)0.00 (C | P)0.00 (C | P)
ER184380ER2cExonRegion11 (100% | 100%)1016.18 (C | P)6.65 (C | P)0.00 (C | P)2.56 (C | P)
ER184381ER3aExonRegion45 (100% | 100%)1115210.24 (C | P)10.64 (C | P)8.54 (C | P)8.66 (C | P)
EJ1436151E3a_E4aKnownJunction62 (100% | 100%)13309.08 (C | P)9.32 (C | P)7.13 (C | P)7.88 (C | P)
ER184382ER4aExonRegion116 (100% | 100%)131789.58 (C | P)9.68 (C | P)6.97 (C | P)7.55 (C | P)
EB255084E4_DaKnownBoundary62 (100% | 56%)1700.00 (C | P)3.29 (C | P)0.00 (C | P)2.98 (C | P)
EJ1436160E4a_E5aKnownJunction62 (50% | 55%)200.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ1436161E4a_E6aKnownJunction62 (100% | 100%)135010.61 (C | P)10.95 (C | P)8.36 (C | P)9.08 (C | P)
ER184383ER4bExonRegion179 (100% | 2%)1602.34 (C | P)4.24 (C | P)1.66 (C | P)2.67 (C | P)
EB255085E4_DbKnownBoundary62 (74% | 0%)1603.34 (C | P)4.16 (C | P)0.00 (C | P)3.98 (C | P)
ER184384ER4cExonRegion189 (7% | 0%)101.75 (C | P)4.33 (C | P)1.60 (C | P)2.36 (C | P)
ER184385ER5aExonRegion358 (73% | 1%)303.28 (C | P)3.60 (C | P)2.08 (C | P)3.69 (C | P)
ER184386ER6aExonRegion152 (100% | 100%)122689.62 (C | P)10.30 (C | P)8.78 (C | P)8.86 (C | P)
EJ1436191E6a_E7aKnownJunction62 (100% | 100%)13609.64 (C | P)9.92 (C | P)8.56 (C | P)8.54 (C | P)
ER184387ER7aExonRegion134 (100% | 100%)115699.64 (C | P)9.93 (C | P)8.12 (C | P)8.49 (C | P)
EB255092E7_DaKnownBoundary62 (100% | 100%)403.62 (C | P)3.37 (C | P)0.00 (C | P)0.00 (C | P)
EJ1436197E7a_E8aKnownJunction62 (100% | 100%)113010.08 (C | P)10.22 (C | P)8.45 (C | P)8.95 (C | P)
ER184388ER7bExonRegion246 (100% | 55%)202.21 (C | P)2.89 (C | P)1.36 (C | P)0.00 (C | P)
ER184389ER8aExonRegion134 (100% | 100%)67459.80 (C | P)9.83 (C | P)8.53 (C | P)8.65 (C | P)
EJ1436207E8a_E9aKnownJunction62 (100% | 100%)7009.98 (C | P)9.52 (C | P)8.30 (C | P)8.21 (C | P)
ER184390ER9aExonRegion124 (100% | 100%)475410.07 (C | P)10.05 (C | P)8.62 (C | P)8.62 (C | P)
EJ1436211E9a_E10aKnownJunction62 (100% | 100%)53010.04 (C | P)10.03 (C | P)8.57 (C | P)8.73 (C | P)
ER184391ER10aExonRegion147 (100% | 100%)334410.01 (C | P)9.99 (C | P)8.58 (C | P)8.54 (C | P)
EJ1436214E10a_E11aKnownJunction62 (100% | 100%)3209.71 (C | P)9.65 (C | P)8.82 (C | P)8.49 (C | P)
EJ1436215E10a_E11bKnownJunction62 (100% | 100%)306.10 (C | P)6.62 (C | P)5.60 (C | P)3.63 (C | P)
ER184392ER11aExonRegion228 (100% | 50%)2539.63 (C | P)9.53 (C | P)8.30 (C | P)8.43 (C | P)
EB255100E11_AbKnownBoundary62 (100% | 50%)2639.23 (C | P)8.87 (C | P)7.94 (C | P)8.11 (C | P)
ER184393ER11bExonRegion186 (100% | 22%)1508.52 (C | P)8.64 (C | P)7.44 (C | P)7.50 (C | P)
ER184394ER11cExonRegion11 (100% | 0%)1807.05 (C | P)6.46 (C | P)6.00 (C | P)6.25 (C | P)
ER184395ER11dExonRegion15 (100% | 0%)1506.86 (C | P)6.03 (C | P)5.76 (C | P)5.99 (C | P)
ER184396ER11eExonRegion4 (100% | 0%)406.29 (C | P)5.23 (C | P)5.13 (C | P)4.93 (C | P)


Figures displaying gene and feature expression levels in each library

The following figures illustrate the expression of the gene 'SEC13L1' and its component features for each library. First the expression values are displayed for only the exons and known (or expressed novel) exon junctions. This first display consists of a single plot with one colored line per library (as indicated in the legend). Next, the expression of the gene relative to the distribution of all gene expression values is displayed as a histogram. In these figures (one for each library) the expression of the current gene is indicated by a dotted red line. Estimated cutoffs for background expression level corresponding to intergenic and intragenic noise are indicated by dotted black lines. The bar plots following these histograms display the expression level of all individual features. The color of the bars correspond to different feature types (enumerated as colored boxes in the legend). As in the histograms, the estimated cutoffs level for intergenic and intragenic noise are indicated as dotted lines. For genes with low expression values, these cutoffs converge to a single value. *If you can not see the figure below, click here