Distributions of all expression values and Top 1% of expressed SilentIntergenicRegion features for libraries: PreTx, PostTx
Download data matrix file (SilentIntergenicRegion x library): SilentIntergenicRegionExpression_v53.txt.gz
Distribution of log2 expression values for library: PreTx and data type: SilentIntergenicRegion
Distribution of all expression values for the feature type: SilentIntergenicRegion. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Distribution of log2 expression values for library: PostTx and data type: SilentIntergenicRegion
Distribution of all expression values for the feature type: SilentIntergenicRegion. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Top 1% of expressed SilentIntergenicRegion features
The following table provides a ranked list of the most highly expressed SilentIntergenicRegion features. Each column corresponds to an expression library. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), followed by the Feature Name (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the log2 expression value 'Exp' for the feature, and the percent expression value '% Exp' ([feature expression/gene expression]*100). For Gene records the percent displayed here represents the percentage of all reads for the library instead. Features that are NOT supported by an EST/mRNA sequence are indicated in bold. For exon junction features the number of exons skipped by the junction is indicated as 'Sn', where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).