Distributions of all expression values and Top 1% of expressed Intergenic features for libraries: PreTx, PostTx
Download data matrix file (Intergenic x library): IntergenicExpression_v53.txt.gz
Distribution of log2 expression values for library: PreTx and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Distribution of log2 expression values for library: PostTx and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Top 1% of expressed Intergenic features
The following table provides a ranked list of the most highly expressed Intergenic features. Each column corresponds to an expression library. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), followed by the Feature Name (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the log2 expression value 'Exp' for the feature, and the percent expression value '% Exp' ([feature expression/gene expression]*100). For Gene records the percent displayed here represents the percentage of all reads for the library instead. Features that are NOT supported by an EST/mRNA sequence are indicated in bold. For exon junction features the number of exons skipped by the junction is indicated as 'Sn', where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
| RANK | PreTx (Gene | Feature | Exp | % Exp) | PostTx (Gene | Feature | Exp | % Exp) |
| 1 | AF347015.1 | IG30 | 11.08 | NA% | AF347015.1 | IG30 | 11.57 | NA% |
| 2 | AL122127.6 AL122127.6 | IG22 | 10.69 | NA% | SSU_rRNA_5 | IG1 | 10.93 | NA% |
| 3 | SSU_rRNA_5 | IG1 | 10.67 | NA% | AL122127.6 AL122127.6 | IG22 | 10.76 | NA% |
| 4 | DTX4 MPEG1 | IG22 | 9.96 | NA% | AL122127.6 IGHJ3P | IG20 | 10.51 | NA% |
| 5 | AL122127.6 IGHJ3P | IG20 | 9.68 | NA% | DTX4 MPEG1 | IG22 | 10.33 | NA% |
| 6 | IGHJ3P AL122127.6 | IG21 | 9.11 | NA% | IGHJ3P AL122127.6 | IG21 | 9.86 | NA% |
| 7 | OR2I1P GABBR1 | IG22 | 8.92 | NA% | IGHM AL122127.6 | IG19 | 9.59 | NA% |
| 8 | PXK PDHB | IG25 | 8.66 | NA% | AC013414.7 AC013414.7 | IG30 | 9.47 | NA% |
| 9 | NEK6 PSMB7 | IG42 | 8.60 | NA% | AC013414.7 RTN4 | IG31 | 9.34 | NA% |
| 10 | NACA | IG51 | 8.37 | NA% | NACA | IG51 | 9.06 | NA% |
| 11 | AC100778.5 SNORD58 | IG27 | 8.21 | NA% | AC100778.5 SNORD58 | IG27 | 8.82 | NA% |
| 12 | IGHM AL122127.6 | IG19 | 8.08 | NA% | TPCN1 | IG1 | 8.80 | NA% |
| 13 | GSTZ1 TMED8 | IG49 | 8.02 | NA% | PXK PDHB | IG25 | 8.62 | NA% |
| 14 | RAB14 | IG51 | 8.01 | NA% | RAB14 | IG51 | 8.58 | NA% |
| 15 | RPL23A TLCD1 | IG41 | 7.99 | NA% | SNORD81 SNORD47 | IG45 | 8.55 | NA% |
| 16 | LNPEP AC008865.3 | IG45 | 7.94 | NA% | NEK6 PSMB7 | IG42 | 8.54 | NA% |
| 17 | TPCN1 | IG1 | 7.87 | NA% | AC010178.40 | IG51 | 8.52 | NA% |
| 18 | GPX3 TNIP1 | IG41 | 7.84 | NA% | AL122127.6 AL122127.6 | IG27 | 8.48 | NA% |
| 19 | NFATC3 RBM35B | IG20 | 7.74 | NA% | CIRBP C19orf24 | IG4 | 8.24 | NA% |
| 20 | AL122127.6 AL122127.6 | IG27 | 7.73 | NA% | AL122127.6 IGHJ1P | IG28 | 8.19 | NA% |
| 21 | ATF7IP AC008114.25 | IG17 | 7.73 | NA% | SNORD47 snosnR60_Z15 | IG46 | 8.18 | NA% |
| 22 | NSBP1 SH3BGRL | IG43 | 7.68 | NA% | snosnR60_Z15 SNORD79 | IG47 | 8.18 | NA% |
| 23 | AC010178.40 | IG51 | 7.57 | NA% | RPL23A TLCD1 | IG41 | 8.11 | NA% |
| 24 | RABEP1 NUP88 | IG14 | 7.55 | NA% | SREBF2 TNFRSF13C | IG36 | 8.06 | NA% |
| 25 | AC013414.7 AC013414.7 | IG30 | 7.55 | NA% | CIITA DEXI | IG28 | 8.05 | NA% |
| 26 | AC097484.3 PPM1K | IG11 | 7.53 | NA% | CLEC17A AC135052.2 | IG17 | 7.86 | NA% |
| 27 | LGALS8 HEATR1 | IG35 | 7.50 | NA% | ULK3 SCAMP2 | IG48 | 7.85 | NA% |
| 28 | AL122127.6 IGHJ1P | IG28 | 7.48 | NA% | IGHA2 IGHE | IG7 | 7.85 | NA% |
| 29 | TRIM44 | IG51 | 7.41 | NA% | LNPEP AC008865.3 | IG45 | 7.84 | NA% |
| 30 | SLAMF6 CD84 | IG46 | 7.40 | NA% | OR2I1P GABBR1 | IG22 | 7.78 | NA% |
| 31 | PLXNC1 CCDC41 | IG14 | 7.38 | NA% | ZNF574 POU2F2 | IG19 | 7.76 | NA% |
| 32 | PIAS1 CALML4 | IG27 | 7.36 | NA% | NSBP1 SH3BGRL | IG43 | 7.71 | NA% |
| 33 | AC013414.7 RTN4 | IG31 | 7.33 | NA% | FAM36A RP11-11N7.2 | IG2 | 7.65 | NA% |
| 34 | AP000753.4 ATL3 | IG48 | 7.33 | NA% | IAH1 ADAM17 | IG42 | 7.53 | NA% |
| 35 | EIF2AK4 SRP14 | IG10 | 7.33 | NA% | PCBP2 MAP3K12 | IG6 | 7.52 | NA% |
| 36 | PCBP2 MAP3K12 | IG6 | 7.23 | NA% | SNORD79 SNORD78 | IG48 | 7.51 | NA% |
| 37 | IAH1 ADAM17 | IG42 | 7.19 | NA% | AC097484.3 PPM1K | IG11 | 7.49 | NA% |
| 38 | AC002558.1 CDC27 | IG11 | 7.18 | NA% | AL122127.6 IGHJ2P | IG24 | 7.41 | NA% |
| 39 | KIF2A DIMT1L | IG24 | 7.16 | NA% | PTOV1 PNKP | IG31 | 7.40 | NA% |
| 40 | HIPK3 AL122015.17 | IG30 | 7.15 | NA% | ATF7IP AC008114.25 | IG17 | 7.36 | NA% |
| 41 | ARIH1 hsa-mir-630 | IG11 | 7.15 | NA% | KIAA1683 JUND | IG14 | 7.31 | NA% |
| 42 | CIITA DEXI | IG28 | 7.15 | NA% | GSTZ1 TMED8 | IG49 | 7.28 | NA% |
| 43 | MFSD4 ELK4 | IG20 | 7.12 | NA% | LGALS8 HEATR1 | IG35 | 7.25 | NA% |
| 44 | REL PUS10 | IG19 | 7.06 | NA% | NFATC3 RBM35B | IG20 | 7.21 | NA% |
| 45 | SFT2D2 AL009051.1 | IG22 | 7.05 | NA% | TXNDC14 C11orf31 | IG47 | 7.21 | NA% |
| 46 | U66061.1 U66061.1 | IG28 | 7.02 | NA% | REL PUS10 | IG19 | 7.20 | NA% |
| 47 | NCKAP1L PDE1B | IG34 | 7.00 | NA% | RPL36 LONP1 | IG13 | 7.12 | NA% |
| 48 | C4orf43 MARCH1 | IG17 | 6.95 | NA% | SLAMF6 CD84 | IG46 | 7.12 | NA% |
| 49 | CHST7 SLC9A7 | IG12 | 6.91 | NA% | EIF2AK4 SRP14 | IG10 | 7.07 | NA% |
| 50 | FAM36A RP11-11N7.2 | IG2 | 6.90 | NA% | PIAS1 CALML4 | IG27 | 7.07 | NA% |
| 51 | RPS25 TRAPPC4 | IG23 | 6.90 | NA% | PLCG2 7SK | IG39 | 7.05 | NA% |
| 52 | MARK2 RCOR2 | IG3 | 6.90 | NA% | RABEP1 NUP88 | IG14 | 7.03 | NA% |
| 53 | C14orf167 AL136419.3 | IG49 | 6.80 | NA% | PTPRCAP CORO1B | IG35 | 7.03 | NA% |
| 54 | AC012360.7 TGFBRAP1 | IG16 | 6.79 | NA% | SNORD78 SNORD44 | IG49 | 7.02 | NA% |
| 55 | AC069257.28 PCYT1A | IG8 | 6.73 | NA% | RPS25 TRAPPC4 | IG23 | 7.02 | NA% |
| 56 | AC032027.7 IMPAD1 | IG50 | 6.69 | NA% | C4orf43 MARCH1 | IG17 | 7.01 | NA% |
| 57 | MPHOSPH8 AL354808.24 | IG48 | 6.68 | NA% | AL122127.6 AL122127.6 | IG26 | 7.00 | NA% |
| 58 | AL513007.5 RNF12 | IG37 | 6.67 | NA% | GTF3A MTIF3 | IG24 | 6.99 | NA% |
| 59 | MAP2K1IP1 DNAJB14 | IG12 | 6.61 | NA% | U66061.1 U66061.1 | IG22 | 6.99 | NA% |
| 60 | AC007216.2 GSPT1 | IG47 | 6.60 | NA% | MPHOSPH8 AL354808.24 | IG48 | 6.98 | NA% |
| 61 | AL009051.1 U6 | IG23 | 6.54 | NA% | GRAMD1B SCN3B | IG27 | 6.94 | NA% |
| 62 | USP14 THOC1 | IG4 | 6.52 | NA% | U66061.1 TRBV19 | IG23 | 6.93 | NA% |
| 63 | SAMD4B PAF1 | IG36 | 6.52 | NA% | KIF2A DIMT1L | IG24 | 6.87 | NA% |
| 64 | NOL5A IDH3B | IG46 | 6.52 | NA% | MYL6 SMARCC2 | IG32 | 6.86 | NA% |
| 65 | TAOK1 AC104564.11 | IG9 | 6.50 | NA% | ZNF224 ZNF225 | IG33 | 6.84 | NA% |
| 66 | CIRBP C19orf24 | IG4 | 6.50 | NA% | CNR2 | IG1 | 6.83 | NA% |
| 67 | CEPT1 DENND2D | IG7 | 6.44 | NA% | SNORD29 SNORD28 | IG29 | 6.79 | NA% |
| 68 | PCYOX1 SNRPG | IG3 | 6.44 | NA% | MARK2 RCOR2 | IG3 | 6.78 | NA% |
| 69 | MRPL51 NCAPD2 | IG12 | 6.44 | NA% | MRPL51 NCAPD2 | IG12 | 6.78 | NA% |
| 70 | CCDC66 C3orf63 | IG2 | 6.41 | NA% | AC069257.28 PCYT1A | IG8 | 6.77 | NA% |
| 71 | SNORD81 SNORD47 | IG45 | 6.40 | NA% | NOL5A IDH3B | IG46 | 6.75 | NA% |
| 72 | RLBP1L1 ASPH | IG21 | 6.38 | NA% | CHST7 SLC9A7 | IG12 | 6.74 | NA% |
| 73 | snosnR60_Z15 SNORD79 | IG47 | 6.37 | NA% | C14orf167 AL136419.3 | IG49 | 6.73 | NA% |
| 74 | NSD1 RAB24 | IG15 | 6.36 | NA% | NCKAP1L PDE1B | IG34 | 6.72 | NA% |
| 75 | GTF3A MTIF3 | IG24 | 6.36 | NA% | MAP2K1IP1 DNAJB14 | IG12 | 6.72 | NA% |
| 76 | EMG1 LPCAT3 | IG44 | 6.35 | NA% | SAMD4B PAF1 | IG36 | 6.68 | NA% |
| 77 | CFLAR AC007283.3 | IG15 | 6.34 | NA% | SAPS2 SBF1 | IG43 | 6.65 | NA% |
| 78 | NOL7 RANBP9 | IG34 | 6.33 | NA% | SNORD22 SNORD31 | IG26 | 6.65 | NA% |
| 79 | MYL6 SMARCC2 | IG32 | 6.31 | NA% | PLXNC1 CCDC41 | IG14 | 6.65 | NA% |
| 80 | RELT FAM168A | IG23 | 6.31 | NA% | C17orf60 POLG2 | IG20 | 6.64 | NA% |
| 81 | ZNF224 ZNF225 | IG33 | 6.30 | NA% | RELT FAM168A | IG23 | 6.64 | NA% |
| 82 | COPS4 PLAC8 | IG19 | 6.27 | NA% | AC002558.1 CDC27 | IG11 | 6.63 | NA% |
| 83 | SAPS2 SBF1 | IG43 | 6.24 | NA% | ARIH1 hsa-mir-630 | IG11 | 6.63 | NA% |
| 84 | IMP3 SH3PX3 | IG21 | 6.24 | NA% | SNORD44 SNORD77 | IG50 | 6.62 | NA% |
| 85 | GATC SFRS9 | IG7 | 6.19 | NA% | AP000753.4 ATL3 | IG48 | 6.60 | NA% |
| 86 | PDHA1 MAP3K15 | IG3 | 6.18 | NA% | MFSD4 ELK4 | IG20 | 6.58 | NA% |
| 87 | EXOSC9 CCNA2 | IG29 | 6.18 | NA% | HIPK3 AL122015.17 | IG30 | 6.54 | NA% |
| 88 | AL122127.6 IGHJ2P | IG24 | 6.17 | NA% | U66061.1 U66061.1 | IG21 | 6.54 | NA% |
| 89 | TSR2 FGD1 | IG9 | 6.15 | NA% | SFT2D2 AL009051.1 | IG22 | 6.53 | NA% |
| 90 | C17orf60 POLG2 | IG20 | 6.14 | NA% | U66061.1 U66061.1 | IG28 | 6.52 | NA% |
| 91 | NPFF ATF7 | IG9 | 6.14 | NA% | POLG2 DDX5 | IG21 | 6.50 | NA% |
| 92 | NCRNA00081 | IG1 | 6.14 | NA% | MMP24 EIF6 | IG25 | 6.47 | NA% |
| 93 | MORC2 AC004542.1 | IG8 | 6.13 | NA% | SNORD24 SNORD75 | IG2 | 6.41 | NA% |
| 94 | APC2 C19orf25 | IG12 | 6.12 | NA% | AL122127.6 AL122127.6 | IG23 | 6.40 | NA% |
| 95 | CREB1 FAM119A | IG32 | 6.10 | NA% | NCRNA00081 | IG1 | 6.39 | NA% |
| 96 | POLG2 DDX5 | IG21 | 6.09 | NA% | GATC SFRS9 | IG7 | 6.35 | NA% |
| 97 | CEBPD | IG1 | 6.08 | NA% | CEPT1 DENND2D | IG7 | 6.35 | NA% |
| 98 | RPL36 LONP1 | IG13 | 6.07 | NA% | USP14 THOC1 | IG4 | 6.35 | NA% |
| 99 | PTRH2 TMEM49 | IG15 | 6.02 | NA% | APC2 C19orf25 | IG12 | 6.35 | NA% |
| 100 | SDF2 SUPT6H | IG37 | 6.02 | NA% | AC012360.7 TGFBRAP1 | IG16 | 6.35 | NA% |