Distributions and lists of all significant differential expression values of the type: SilentIntergenicRegion for comparisons: PostTx_vs_PreTx (p-value < 0.05 after multiple testing correction and Fold-Change > 1.5)
Distribution of log2 differential expression values for comparison: PostTx_vs_PreTx and data type: SilentIntergenicRegion
Distribution of all differential expression values that meet the p-value and fold-change cutoff for the feature type: SilentIntergenicRegion. The total number of significant DE features, as well as the max and min log2 DE observed are noted in the legend. *If you can not see the figure below, click here
Scatter plot of log2 expression values for comparison: PostTx_vs_PreTx and data type: SilentIntergenicRegion
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. Features that are differentially expressed (meet the p-value and fold-change cutoff) are indicated in magenta. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
SmoothScatter plot of log2 expression values for comparison: PostTx_vs_PreTx and data type: SilentIntergenicRegion
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
Significant differentially expressed SilentIntergenicRegion features
The following table provides a ranked list of all significant differentially expressed SilentIntergenicRegion features. Each column corresponds to a pair-wise comparison of two libraries. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the fold-change (FC) of the differential expression event, and the multiple testing corrected p-value for the feature. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
| RANK | PostTx_vs_PreTx (Gene | Feature | Links | Values) |
| 1 | MGAT5B AC015815.14 | IG16_SR1 | (PostTx) | (PreTx) | FC = 14.71 | q.value = 0.000235 |
| 2 | AL122015.17 C11orf41 | IG31_SR9 | (PostTx) | (PreTx) | FC = -12.82 | q.value = 7.26e-07 |
| 3 | RGS16 RGS8 | IG20_SR7 | (PostTx) | (PreTx) | FC = 12.16 | q.value = 0.016 |
| 4 | SRFBP1 LOX | IG6_SR3 | (PostTx) | (PreTx) | FC = -11.18 | q.value = 0.000926 |
| 5 | IGHA2 IGHE | IG7_SR1 | (PostTx) | (PreTx) | FC = 11.01 | q.value = 2.11e-20 |
| 6 | KIAA2018 NAT13 | IG17_SR6 | (PostTx) | (PreTx) | FC = -9.57 | q.value = 0.0328 |
| 7 | ZNF79 RPL12 | IG19_SR4 | (PostTx) | (PreTx) | FC = -9.40 | q.value = 0.0328 |
| 8 | INO80B WBP1 | IG11_SR1 | (PostTx) | (PreTx) | FC = 9.19 | q.value = 0.0116 |
| 9 | SLIT2 PACRGL | IG15_SR1 | (PostTx) | (PreTx) | FC = -8.60 | q.value = 0.0401 |
| 10 | FAM38B2 C18orf58 | IG8_SR2 | (PostTx) | (PreTx) | FC = -8.25 | q.value = 0.0245 |
| 11 | ETNK1 SOX5 | IG18_SR44 | (PostTx) | (PreTx) | FC = 7.83 | q.value = 0.0271 |
| 12 | AC011414.4 TIMD4 | IG28_SR3 | (PostTx) | (PreTx) | FC = -7.73 | q.value = 7.84e-05 |
| 13 | AC011414.4 TIMD4 | IG28_SR2 | (PostTx) | (PreTx) | FC = -7.51 | q.value = 2.74e-05 |
| 14 | BHLHE22 CYP7B1 | IG34_SR9 | (PostTx) | (PreTx) | FC = -6.87 | q.value = 0.0328 |
| 15 | IGHA2 IGHE | IG7_SR2 | (PostTx) | (PreTx) | FC = 5.55 | q.value = 5.1e-05 |
| 16 | D87023.1 D87023.1 | IG20_SR3 | (PostTx) | (PreTx) | FC = 4.71 | q.value = 1.67e-05 |
| 17 | EIF2AK4 SRP14 | IG10_SR2 | (PostTx) | (PreTx) | FC = -4.61 | q.value = 0.00186 |
| 18 | D87023.1 D87023.1 | IG20_SR4 | (PostTx) | (PreTx) | FC = 4.47 | q.value = 3.21e-12 |
| 19 | D87023.1 D87023.1 | IG20_SR6 | (PostTx) | (PreTx) | FC = 4.12 | q.value = 7.26e-07 |
| 20 | AC009729.14 CMKLR1 | IG28_SR3 | (PostTx) | (PreTx) | FC = -4.04 | q.value = 0.001 |
| 21 | AC009053.7 GLG1 | IG39_SR10 | (PostTx) | (PreTx) | FC = -3.63 | q.value = 0.000225 |
| 22 | TCF12 CGNL1 | IG34_SR8 | (PostTx) | (PreTx) | FC = 3.57 | q.value = 1.26e-05 |
| 23 | PTOV1 PNKP | IG31_SR1 | (PostTx) | (PreTx) | FC = 3.45 | q.value = 0.0275 |
| 24 | AC013414.7 RTN4 | IG31_SR3 | (PostTx) | (PreTx) | FC = 3.40 | q.value = 0.00875 |
| 25 | BET1 COL1A2 | IG45_SR9 | (PostTx) | (PreTx) | FC = -3.24 | q.value = 0.00659 |
| 26 | TCF12 CGNL1 | IG34_SR6 | (PostTx) | (PreTx) | FC = 3.17 | q.value = 0.00405 |
| 27 | NFIC AC005551.1 | IG14_SR1 | (PostTx) | (PreTx) | FC = -3.07 | q.value = 0.0302 |
| 28 | TCF12 CGNL1 | IG34_SR7 | (PostTx) | (PreTx) | FC = 3.05 | q.value = 6.18e-05 |
| 29 | IGHM AL122127.6 | IG19_SR3 | (PostTx) | (PreTx) | FC = 2.93 | q.value = 3.86e-08 |
| 30 | OR2I1P GABBR1 | IG22_SR1 | (PostTx) | (PreTx) | FC = -2.92 | q.value = 0.00607 |
| 31 | RP4-717I23.2 DR1 | IG26_SR13 | (PostTx) | (PreTx) | FC = 2.84 | q.value = 0.0328 |
| 32 | GSTZ1 TMED8 | IG49_SR3 | (PostTx) | (PreTx) | FC = -2.77 | q.value = 0.00046 |
| 33 | AP001011.6 SMCHD1 | IG20_SR5 | (PostTx) | (PreTx) | FC = -2.47 | q.value = 0.00547 |
| 34 | RP11-108A15.2 FXYD8 | IG13_SR16 | (PostTx) | (PreTx) | FC = 2.12 | q.value = 0.00875 |
| 35 | RASSF3 GNS | IG18_SR1 | (PostTx) | (PreTx) | FC = -2.02 | q.value = 0.0329 |