Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SH2D1A	Gene	0	38.80	197.62	53.50	44.28	31.33	450.05	278.13	7.22	312.76	271.81	64.48	17.34	47.67	133.32	292.58	246.54	205.46	35.02	110.12	57.64	83.73	136.32	30.80	172.00	43.17	42.19	36.54	85.04	49.42
2	360027	Transcript	0	1.00	3.11	2.77	0.00	1.31	8.50	12.55	0.78	4.85	8.53	0.99	0.29	1.42	5.14	5.65	5.97	8.84	0.00	0.00	0.00	0.81	4.08	0.00	2.78	1.68	1.65	0.00	0.54	0.02
3	371139	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	394475	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	394476	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	470647	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	477673	Transcript	0	2.83	2.42	0.00	0.00	0.00	7.92	17.59	0.00	12.42	12.18	10.09	0.00	0.72	2.70	0.00	5.09	8.26	0.00	4.05	2.07	0.00	1.07	1.06	1.29	1.63	0.82	0.00	4.16	0.00
8	494073	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	491950	Transcript	0	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1a	ExonRegion	0	0.00	0.00	1.86	0.00	3.92	5.29	4.29	0.00	2.27	5.01	1.77	0.87	0.00	4.03	0.00	7.97	9.40	0.00	0.00	0.00	0.00	1.69	0.00	0.32	0.00	3.91	0.00	1.63	0.06
11	E1_Ab	KnownBoundary	0	0.00	0.00	4.01	0.00	7.22	9.17	8.24	0.00	4.20	9.31	3.04	1.51	1.85	8.40	0.00	10.48	19.13	0.00	0.00	0.00	0.00	4.57	0.00	0.00	0.00	8.71	0.00	0.00	0.00
12	ER1b	ExonRegion	0	4.87	9.60	13.10	9.41	4.09	18.44	23.93	0.46	13.49	22.08	3.10	1.29	2.12	11.45	12.94	18.23	30.66	1.25	6.81	0.74	2.92	18.97	2.89	2.44	1.77	6.23	1.27	3.41	3.46
13	E1_Ac	KnownBoundary	0	0.00	16.58	10.36	0.00	0.00	3.80	7.09	0.00	5.51	8.67	7.37	1.30	0.00	7.02	0.00	7.27	28.86	0.00	0.00	0.00	2.05	4.62	0.00	0.00	1.70	1.97	0.00	2.16	1.98
14	E1_Ad	KnownBoundary	0	18.17	46.83	1.35	77.22	64.55	127.73	186.86	0.00	36.51	83.01	29.58	10.99	11.91	34.90	177.39	175.18	16.12	14.64	32.37	31.59	31.57	133.26	25.95	27.63	15.57	65.66	11.23	75.89	11.13
15	ER1c	ExonRegion	0	22.35	52.09	71.01	65.81	45.55	137.86	214.53	0.00	81.70	108.28	32.64	13.61	23.94	57.53	166.42	172.81	195.62	19.49	35.56	28.11	41.77	139.33	28.16	20.90	15.93	61.74	9.16	67.53	17.06
16	E1_Ae	KnownBoundary	0	61.58	86.58	160.45	124.67	77.81	219.88	384.83	2.24	230.34	245.83	50.99	17.29	60.63	112.62	244.17	301.63	392.94	27.74	72.61	40.03	74.89	288.30	69.44	51.50	26.03	147.71	37.32	220.97	96.40
17	ER1d	ExonRegion	0	49.37	75.66	105.33	119.52	77.99	217.24	355.40	1.04	150.27	205.69	51.14	18.28	45.83	95.64	240.13	287.71	277.63	24.90	56.86	43.74	71.01	257.06	53.29	46.99	24.30	120.43	24.61	169.12	59.06
18	ER1e	ExonRegion	0	39.18	72.68	58.01	52.89	37.51	153.11	188.63	3.58	142.00	115.69	21.80	14.11	32.80	98.83	162.65	174.32	221.00	15.19	41.43	32.52	38.95	244.60	21.16	50.90	19.18	56.14	18.29	90.35	61.27
19	E1_Da	NovelBoundary	0	69.37	122.64	7.30	8.63	12.53	208.37	276.98	7.07	216.24	156.47	1.11	24.52	36.14	117.81	298.38	252.06	221.90	33.52	32.37	52.76	59.97	252.42	30.14	68.97	18.49	60.64	1.99	56.16	39.72
20	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.29	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1_Db	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E1b_E3a	KnownJunction	0	50.55	155.70	13.48	9.27	14.74	310.51	580.79	4.43	278.64	382.96	44.35	31.29	55.19	176.63	348.01	451.50	372.57	32.36	121.16	54.42	68.63	236.18	52.55	86.91	48.68	139.26	16.25	148.18	88.94
25	E1b_E4a	KnownJunction	0	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E1b_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER1f	ExonRegion	0	64.69	146.33	11.48	7.31	11.55	279.37	434.49	6.86	239.36	298.99	27.43	28.67	53.79	157.04	323.56	366.38	309.76	39.20	82.29	60.68	65.22	256.15	45.04	82.82	35.86	106.44	10.24	115.29	68.02
28	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.44	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.81	0.00	0.00	0.00	3.41	0.00	0.00	0.00	0.00
29	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	Ix	Intron	0	0.63	1.58	0.20	0.31	0.00	4.12	0.85	0.00	6.19	2.79	0.17	0.28	0.18	1.04	3.93	2.85	3.44	0.52	2.81	0.00	3.13	0.35	0.27	3.60	0.28	0.97	0.22	1.49	0.65
31	Ix_AR1	ActiveIntronRegion	0	0.47	1.40	0.00	0.00	0.00	1.83	1.31	0.00	2.16	3.11	0.26	0.00	0.57	1.57	2.38	1.08	0.32	0.08	1.69	0.00	1.55	0.00	0.00	1.40	0.00	0.00	0.00	0.71	0.00
32	Ix_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.75	0.00	0.00	0.96	0.83	0.00	0.00	1.30	0.00	0.00	0.00	0.00	2.73	9.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	Ix_AR2	ActiveIntronRegion	0	0.00	1.17	0.00	0.00	0.00	3.53	1.02	0.00	5.06	1.05	0.00	0.46	0.19	1.36	1.00	3.03	2.09	0.92	4.17	0.00	5.13	0.00	0.00	0.78	0.00	0.00	0.00	0.89	0.00
34	Ix_SR3	SilentIntronRegion	0	0.29	1.30	0.00	0.00	0.00	4.73	0.95	0.00	5.14	4.02	0.22	0.19	0.00	1.16	0.63	1.63	1.25	0.72	2.58	0.00	4.23	0.22	0.00	2.08	0.27	0.49	0.11	1.91	0.56
35	Ix_AR3	ActiveIntronRegion	0	1.00	1.50	0.50	0.00	0.00	4.29	1.14	0.00	6.51	4.02	0.29	0.39	0.00	1.82	3.04	2.53	3.93	0.71	1.58	0.00	2.14	0.00	0.67	6.04	0.00	1.46	0.90	2.51	2.42
36	Ix_SR4	SilentIntronRegion	0	1.03	2.31	0.38	0.86	0.00	5.57	0.97	0.00	10.29	2.37	0.25	0.33	0.19	1.32	8.52	4.10	5.99	0.52	2.88	0.00	3.49	0.76	0.49	6.77	0.56	1.35	0.33	1.55	0.87
37	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	10.47	0.00	0.00	7.00	3.87	0.00	0.00	0.00	1.11	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29
38	E3_Ab	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.72	0.00	0.00	1.49	0.00	0.00	0.00	1.82	2.15	0.00	3.75	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	1.82
39	ER3a	ExonRegion	0	57.87	145.63	13.46	9.75	9.96	276.31	523.42	5.52	247.92	364.79	55.14	32.98	62.35	169.62	349.10	415.04	377.65	40.94	107.11	53.40	60.86	223.54	54.85	83.18	42.40	132.02	16.48	157.03	80.08
40	ER3b	ExonRegion	0	46.70	143.46	35.45	37.52	18.62	475.75	627.66	12.56	304.75	519.62	119.36	29.42	70.74	214.44	442.91	412.43	408.42	56.60	113.37	69.71	65.17	187.84	72.36	114.43	78.54	160.25	41.64	254.98	116.81
41	E3_Da	NovelBoundary	0	0.00	4.75	0.00	0.00	0.00	5.41	0.00	0.00	4.66	5.55	0.00	0.00	0.00	2.22	0.00	14.31	11.73	0.00	16.18	0.00	1.48	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
42	E3a_E4a	KnownJunction	0	66.24	113.24	69.39	89.51	41.85	754.92	623.81	26.72	393.87	509.51	110.31	27.80	73.62	250.55	556.90	419.83	369.74	56.25	80.70	68.56	109.54	233.61	61.37	150.74	94.60	136.51	71.86	331.91	170.48
43	E3a_E4b	KnownJunction	0	5.66	4.85	0.00	0.00	0.00	15.85	35.19	0.00	24.85	24.37	20.18	0.00	1.43	5.41	0.00	10.17	16.52	0.00	8.09	4.13	0.00	2.14	2.12	2.57	3.26	1.63	0.00	8.31	0.00
44	Ix	Intron	0	0.80	2.27	0.53	0.21	0.21	7.78	0.79	0.00	6.35	5.27	1.08	0.07	0.17	2.00	2.89	4.79	5.17	0.81	4.20	0.44	2.84	0.23	0.18	2.33	0.43	0.61	0.19	1.65	0.44
45	Ix_SR1	SilentIntronRegion	0	0.94	2.46	0.46	0.29	0.29	8.91	0.96	0.00	6.83	5.34	1.35	0.10	0.21	2.13	2.59	5.18	5.78	0.77	4.09	0.49	3.01	0.22	0.07	2.09	0.48	0.66	0.00	1.75	0.39
46	Ix_AR1	ActiveIntronRegion	0	0.00	6.05	1.51	0.00	0.00	6.18	0.18	0.00	1.99	1.07	0.90	0.00	0.00	0.83	0.00	7.19	2.79	1.42	1.51	0.00	0.00	0.00	0.00	5.18	0.00	1.02	0.00	0.00	0.00
47	Ix_AR2	ActiveIntronRegion	0	0.45	1.76	0.87	0.00	0.00	6.06	0.34	0.00	6.07	6.25	0.50	0.00	0.00	2.28	4.56	3.55	4.12	0.20	3.67	0.00	2.85	0.56	0.94	2.46	0.46	0.23	1.34	1.70	0.72
48	Ix_SR2	SilentIntronRegion	0	0.54	1.11	0.42	0.00	0.00	3.04	0.35	0.00	4.48	4.42	0.15	0.00	0.16	1.12	3.27	3.41	3.08	1.69	5.99	0.69	2.29	0.00	0.00	3.24	0.17	0.70	0.00	1.22	0.55
49	E4_Aa	NovelBoundary	0	0.00	7.27	1.54	0.00	0.00	4.57	0.00	0.00	13.06	3.56	0.00	0.00	1.21	1.13	0.00	0.00	4.73	0.00	0.00	0.00	0.00	0.00	0.00	8.43	0.00	0.00	0.00	3.41	0.00
50	ER4a	ExonRegion	0	57.22	166.30	123.85	68.56	38.87	425.19	365.46	18.35	281.08	308.01	74.76	15.68	55.90	229.56	322.64	296.19	237.37	53.22	129.07	67.91	90.42	278.07	44.53	169.29	72.69	65.00	84.35	177.73	89.69
51	E4_Ab	KnownBoundary	0	51.85	197.49	155.59	108.28	55.12	349.07	261.93	6.77	256.44	218.22	52.23	9.49	50.51	182.33	412.79	329.25	130.96	42.38	120.94	78.48	85.44	246.34	26.25	187.58	79.82	11.97	63.51	74.09	31.03
52	ER4b	ExonRegion	0	51.15	184.15	175.44	81.16	50.89	332.05	281.65	10.87	234.71	267.81	61.16	9.65	45.44	187.33	316.49	291.63	178.97	35.91	109.95	83.60	58.48	181.90	30.10	137.76	55.38	34.36	68.99	60.95	24.03
53	E4_Da	KnownBoundary	0	37.10	157.35	125.37	42.06	40.09	233.70	215.70	12.29	206.04	250.54	22.52	9.13	30.76	141.47	374.52	224.22	169.99	27.74	80.92	86.75	28.96	105.06	27.09	102.64	35.88	27.04	41.25	55.36	16.41
54	E4b_E5a	KnownJunction	1	3.01	8.24	5.71	0.00	0.00	19.30	33.36	2.34	10.02	20.57	0.00	0.00	4.27	10.77	16.94	9.94	15.13	0.00	0.00	0.00	1.97	10.55	0.00	8.02	5.04	0.00	0.00	0.00	0.00
55	ER4c	ExonRegion	0	33.41	203.55	146.41	74.89	64.42	369.69	344.90	9.21	293.82	322.56	53.76	13.09	39.82	194.89	359.40	276.46	228.19	36.14	98.63	71.53	44.86	156.34	36.66	129.96	50.86	31.11	37.83	64.98	22.45
56	E4_Dc	NovelBoundary	0	0.00	9.70	0.00	0.00	6.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00
57	E4c_E5a	KnownJunction	0	58.69	224.05	103.37	223.67	205.14	797.32	590.86	15.58	470.86	543.42	97.62	20.30	47.99	260.61	416.58	354.27	225.14	41.61	121.39	81.13	109.22	237.40	51.47	195.54	75.35	54.11	39.41	105.27	40.14
58	ER4d	ExonRegion	0	47.39	213.15	100.99	173.88	159.96	680.92	532.61	13.09	387.12	474.52	86.35	18.14	45.18	240.07	387.06	317.75	211.03	40.94	110.63	83.07	92.08	222.34	44.40	171.14	73.53	49.94	39.48	91.10	31.76
59	E5_Aa	NovelBoundary	0	0.00	4.27	0.00	0.00	0.00	6.60	5.72	0.00	0.00	0.00	0.00	0.00	0.00	1.13	9.97	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	5.74	0.00	0.00	0.00	0.00	0.00
60	ER5a	ExonRegion	0	69.29	310.80	42.67	71.17	70.82	688.48	550.34	13.83	391.28	433.48	95.01	27.26	58.47	210.72	469.52	462.50	229.91	58.44	193.69	106.13	137.45	223.42	37.20	232.34	83.79	35.27	55.84	73.74	44.69
61	E5_Da	KnownBoundary	0	31.44	296.28	35.18	0.00	27.26	652.75	510.30	4.48	477.01	412.20	64.47	30.12	64.84	173.38	670.91	524.17	266.85	38.14	218.50	74.26	144.40	193.01	47.08	251.58	55.69	23.90	43.93	90.54	38.69
62	ER5b	ExonRegion	0	56.28	239.26	72.09	50.12	31.22	787.87	508.62	10.23	391.25	316.22	94.16	24.91	37.67	158.63	418.65	365.94	235.03	47.85	145.55	102.93	163.71	138.90	41.25	206.02	45.66	29.36	55.29	73.84	36.75
63	E5_Db	KnownBoundary	0	61.11	218.14	19.13	19.20	32.72	1025.91	446.39	4.68	359.61	407.01	121.67	20.15	25.73	143.62	379.90	356.87	225.68	50.86	161.85	141.33	192.53	115.71	51.17	203.13	39.55	32.74	59.69	99.84	48.50
64	ER5c	ExonRegion	0	38.18	241.71	50.99	42.89	29.82	510.28	252.72	7.25	384.64	307.08	72.91	18.56	58.40	141.01	319.11	247.98	220.79	38.50	127.24	58.39	90.54	124.89	32.26	219.33	47.47	42.43	38.63	92.11	56.85
65	ER5d	ExonRegion	0	0.00	1.09	0.75	0.00	0.00	0.92	0.00	0.00	2.25	0.00	1.19	0.00	0.00	0.60	0.00	0.00	2.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00