Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TCEAL1	Gene	0	107.75	79.62	60.63	164.32	66.08	63.59	185.90	41.91	24.48	66.10	72.97	51.85	33.82	44.26	325.81	28.05	97.23	26.29	30.51	40.01	99.95	105.60	43.00	150.11	68.44	46.23	57.03	50.18	90.36
2	372626	Transcript	0	21.89	14.27	17.35	50.58	20.59	8.19	28.91	7.94	5.32	8.98	12.52	17.44	4.12	4.66	50.13	2.94	16.98	2.79	3.22	2.70	10.63	58.16	8.96	4.33	4.53	17.50	4.55	38.09	11.39
3	372625	Transcript	0	20.13	5.32	9.85	18.01	1.36	9.45	10.61	2.58	6.48	2.00	0.60	5.04	1.84	2.78	33.80	0.81	4.29	1.36	1.44	1.53	13.65	33.24	7.72	14.20	6.75	17.07	1.75	0.07	9.67
4	469820	Transcript	0	13.86	7.43	4.39	22.64	6.67	3.86	9.91	4.27	2.47	3.27	1.42	2.45	1.05	4.36	15.67	5.87	11.95	3.51	5.22	3.37	5.88	10.31	3.95	12.96	4.54	3.58	1.89	1.65	3.02
5	372624	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	43.77	28.54	34.70	101.16	41.18	16.39	57.83	15.87	10.65	17.95	25.03	34.88	8.24	9.31	100.25	5.88	33.96	5.58	6.44	5.40	21.25	116.32	17.92	8.65	9.07	34.99	9.10	76.18	22.79
7	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E3b	NovelJunction	0	5.60	0.00	0.00	0.00	5.89	0.00	2.80	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
9	Ix	Intron	0	0.64	1.91	0.00	2.13	0.00	0.00	2.99	1.09	0.33	1.28	0.35	0.37	0.00	1.21	8.47	0.74	2.66	1.14	1.89	0.00	2.54	0.00	1.07	0.64	0.85	5.13	0.00	0.97	0.40
10	Ix_AR1	ActiveIntronRegion	0	0.64	1.93	0.00	2.15	0.00	0.00	3.02	1.10	0.34	1.30	0.36	0.37	0.00	1.22	8.57	0.74	2.69	1.16	1.92	0.00	2.57	0.00	1.08	0.65	0.86	5.19	0.00	0.98	0.40
11	E2_Aa	NovelBoundary	0	83.88	0.00	18.44	153.79	21.22	42.36	121.35	33.59	20.49	28.88	4.90	9.46	11.43	8.91	35.68	3.60	18.77	9.25	24.28	4.13	81.58	132.48	16.89	18.18	12.99	95.18	11.78	20.67	43.91
12	E2_Ab	NovelBoundary	0	27.90	9.11	10.59	72.69	36.40	7.33	13.79	2.34	4.60	4.03	1.61	3.25	12.99	4.81	19.93	0.00	16.97	0.00	0.00	7.28	17.41	33.50	9.75	5.38	13.26	14.16	0.00	9.12	9.11
13	ER2a	ExonRegion	0	6.82	2.69	5.00	15.95	2.72	3.12	4.40	3.01	0.51	2.36	1.19	1.01	0.12	3.05	24.95	1.61	5.83	2.73	2.88	3.07	7.52	10.82	5.59	20.14	6.76	12.29	3.50	0.15	2.93
14	ER2b	ExonRegion	0	65.73	13.80	25.06	90.19	22.58	19.25	38.84	34.74	1.12	22.33	11.90	4.70	3.72	14.69	92.60	13.50	25.71	13.83	12.37	12.55	34.90	64.54	30.62	78.16	35.07	43.38	30.04	3.91	32.03
15	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	1.23	0.00	0.00	1.09	0.00	0.00	4.19	0.00	0.00	0.00	3.25	0.00	0.00	2.87	1.44	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	115.26	16.38	76.56	217.85	62.78	31.73	75.18	69.52	0.00	46.10	26.70	24.79	16.02	29.18	120.59	22.26	64.20	4.62	24.28	22.16	44.88	97.33	37.53	92.53	40.16	61.24	55.71	10.38	85.57
17	E2a_E3b	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.12	5.14	0.00	0.00	0.00	0.00	0.00
18	ER2c	ExonRegion	0	93.98	18.19	47.64	153.85	40.43	27.02	56.75	57.00	1.12	35.26	19.64	11.66	11.09	23.65	126.01	15.67	37.06	19.52	21.24	19.46	44.05	90.28	35.68	100.44	43.48	60.99	46.14	7.84	59.00
19	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	0	67.87	31.93	125.08	204.97	99.04	25.86	83.06	51.33	5.55	31.91	28.84	33.36	21.38	27.20	157.48	16.26	67.81	14.17	18.50	21.95	41.74	100.82	46.59	62.60	32.77	44.28	37.79	34.95	78.08
21	E3_Da	KnownBoundary	0	2.18	7.85	7.10	8.20	12.53	0.00	4.69	7.51	0.00	0.00	3.86	1.11	0.00	1.91	24.72	0.00	3.74	0.00	0.00	0.00	3.01	11.62	3.94	6.70	9.13	0.00	2.14	0.00	9.74
22	E3a_E3b	KnownJunction	0	95.73	45.66	67.05	86.92	46.72	19.57	47.95	44.94	12.49	14.34	8.83	25.69	13.12	13.16	67.37	17.14	28.72	14.64	0.00	19.52	71.84	169.19	22.01	57.48	15.38	39.65	14.01	9.93	54.64
23	E3_Db	KnownBoundary	0	0.00	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
24	E3b_E3b	KnownJunction	0	33.44	7.95	14.70	20.06	0.00	15.77	16.82	2.14	12.46	1.64	0.00	9.07	3.57	2.50	42.65	0.00	2.75	0.00	0.00	0.00	19.77	55.67	9.85	8.25	6.74	21.84	0.00	0.00	16.41
25	ER3b	ExonRegion	0	29.12	9.58	15.15	24.98	9.96	13.63	18.48	10.89	7.58	1.68	2.38	7.22	4.76	2.72	57.87	0.84	6.51	0.00	0.00	0.70	22.94	62.65	9.79	16.49	9.65	26.32	2.75	3.40	18.57
26	ER3c	ExonRegion	0	13.86	7.43	4.39	22.64	6.67	3.86	9.91	4.27	2.47	3.27	1.42	2.45	1.05	4.36	15.67	5.87	11.95	3.51	5.22	3.37	5.88	10.31	3.95	12.96	4.54	3.58	1.89	1.65	3.02
27	E3_Ab	KnownBoundary	0	10.91	17.94	4.51	9.92	0.00	1.96	8.24	2.04	5.33	2.04	0.00	2.47	0.00	2.90	51.03	9.18	22.91	0.00	0.00	6.78	1.60	1.90	0.00	33.92	4.89	3.95	0.00	1.80	0.00
28	ER3d	ExonRegion	0	173.11	76.32	113.27	184.40	85.17	47.29	182.62	79.38	24.43	80.79	61.52	63.70	42.91	58.62	330.44	29.32	113.44	35.76	27.32	53.13	80.41	194.66	65.41	162.70	93.59	83.31	47.47	76.34	108.57
29	E3_Dc	KnownBoundary	0	286.02	130.98	188.93	708.33	323.92	105.28	312.05	129.84	41.60	136.61	130.94	81.29	79.45	96.71	506.47	40.39	159.14	37.50	24.05	57.56	156.31	237.01	52.40	281.67	149.76	109.17	79.86	124.95	140.90
30	ER3e	ExonRegion	0	240.07	165.95	113.26	369.58	135.09	146.86	467.08	98.07	41.21	156.07	180.42	124.04	73.80	103.19	556.29	47.26	224.37	44.81	39.97	73.36	213.62	204.52	90.70	318.61	176.32	98.30	128.14	118.45	198.09
31	E3_Dd	KnownBoundary	0	235.94	237.43	74.20	163.71	78.25	155.66	375.16	51.76	45.74	133.86	200.47	120.21	65.47	105.16	555.70	58.98	199.45	36.86	16.18	79.97	245.92	171.72	61.51	433.54	149.04	58.32	98.10	54.68	155.49
32	ER3f	ExonRegion	0	85.37	110.99	36.82	160.26	64.13	92.43	224.29	19.39	38.30	73.26	98.01	52.85	39.61	44.98	502.07	39.99	105.96	32.87	52.14	51.01	149.56	64.78	37.03	197.43	62.65	27.33	79.90	35.08	103.92