Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	UBE2A	Gene	0	566.16	562.00	110.15	417.72	637.23	167.44	311.70	250.09	262.52	265.82	344.00	416.35	270.54	351.66	910.39	723.57	331.66	174.39	563.01	596.70	403.85	544.64	223.93	220.40	421.93	524.49	766.72	310.57	314.88
2	371558	Transcript	0	120.96	22.46	50.31	279.66	355.44	8.81	47.89	16.12	4.28	21.93	16.82	24.97	34.76	14.10	81.89	68.74	14.65	42.41	25.20	32.51	40.86	140.56	48.87	4.42	14.83	83.17	29.21	41.63	57.35
3	404672	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	346330	Transcript	0	32.09	15.80	14.58	0.00	0.00	5.64	29.47	8.91	13.58	18.45	1.52	40.84	10.86	16.84	32.89	13.46	14.45	41.61	40.46	24.98	48.53	32.04	43.04	5.56	10.38	31.58	60.13	8.49	18.55
5	469205	Transcript	0	48.55	16.10	4.74	5.22	3.52	17.73	5.11	5.29	2.64	12.25	4.65	5.76	0.83	27.74	7.98	72.81	25.69	18.85	21.81	10.69	18.27	3.94	0.86	0.39	7.29	11.04	4.99	11.93	1.52
6	371569	Transcript	0	37.74	43.98	3.89	15.69	21.21	27.14	10.96	6.45	25.55	16.78	10.20	19.39	3.99	32.64	78.02	124.31	62.88	24.44	43.55	29.72	29.20	5.30	3.37	18.09	17.59	7.54	15.33	11.96	9.38
7	IG24_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	1.39	0.00
8	IG24_AR2	ActiveIntergenicRegion	0	9.31	0.00	1.09	4.49	7.12	0.00	4.41	5.21	0.82	0.00	1.38	0.00	1.80	0.17	0.00	8.97	0.00	6.90	0.00	0.00	2.06	10.76	0.65	1.57	4.15	11.11	1.33	1.07	7.57
9	ER1a	ExonRegion	0	120.96	22.46	50.31	279.66	355.44	8.81	47.89	16.12	4.28	21.93	16.82	24.97	34.76	14.10	81.89	68.74	14.65	42.41	25.20	32.51	40.86	140.56	48.87	4.42	14.83	83.17	29.21	41.63	57.35
10	E1_Ab	KnownBoundary	0	343.77	63.11	101.23	674.25	964.10	19.99	105.96	54.44	9.35	45.38	35.87	54.82	70.38	30.82	193.14	123.85	29.13	70.89	32.37	82.53	80.90	419.57	99.68	20.76	33.98	167.92	65.00	111.03	119.05
11	ER1b	ExonRegion	0	641.48	95.74	191.29	703.43	1545.49	83.91	250.32	153.27	63.34	164.84	90.01	196.33	138.46	119.49	349.52	735.43	219.81	191.17	180.24	231.78	294.89	810.78	399.71	51.40	179.55	612.87	362.31	255.39	221.71
12	E1_Ac	KnownBoundary	0	279.83	20.26	36.18	192.40	210.59	18.65	77.87	65.84	28.87	49.41	50.87	54.40	58.78	34.96	76.34	91.11	43.58	83.48	16.18	84.19	70.43	274.54	67.03	30.98	59.18	203.03	203.31	120.55	99.77
13	ER1c	ExonRegion	0	604.04	70.84	39.71	162.18	177.09	54.59	144.55	159.25	48.84	97.43	88.51	89.10	111.69	106.11	190.87	195.03	48.57	110.36	137.23	268.15	185.73	683.38	82.28	91.49	149.57	301.78	164.60	125.70	121.34
14	E1_Da	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	3.45	5.49	0.00	0.00	0.00	0.00	1.14	0.00	2.04	0.00	3.29	0.00	0.00	0.00	0.00	9.47	1.99	0.00	0.00	0.00	1.63	0.00	0.00	0.00
15	E1a_E2a	KnownJunction	1	1707.10	335.64	76.41	179.24	164.32	241.03	388.89	535.78	121.02	219.42	226.19	278.01	183.04	316.33	481.95	859.16	171.50	198.42	331.34	1082.04	714.25	2012.56	206.21	292.62	439.70	517.07	303.75	117.59	185.67
16	E1a_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1d	ExonRegion	0	1438.67	268.54	67.96	191.04	161.28	188.24	328.32	450.49	104.63	192.47	178.44	233.46	182.11	272.96	371.04	655.30	149.69	193.77	291.35	884.83	618.07	1696.27	189.30	245.10	378.77	499.48	257.22	121.85	174.73
18	I1	Intron	0	6.79	1.13	0.59	2.52	15.46	0.00	4.25	0.00	0.40	0.00	0.42	0.00	0.00	1.11	1.62	4.75	0.53	6.10	0.00	0.97	2.51	0.63	0.64	0.76	1.01	3.31	1.29	5.16	0.93
19	I1_AR1	ActiveIntronRegion	0	6.88	1.15	0.60	2.56	15.68	0.00	4.31	0.00	0.40	0.00	0.42	0.00	0.00	1.13	1.64	4.81	0.53	6.18	0.00	0.98	2.54	0.64	0.64	0.77	1.02	3.35	1.31	5.23	0.95
20	E2_Aa	NovelBoundary	0	27.96	4.46	1.35	10.78	73.69	7.06	5.09	8.96	0.00	3.28	0.00	4.64	1.31	4.21	28.30	3.14	4.46	0.00	0.00	3.72	24.51	2.38	11.77	0.00	8.49	7.81	12.52	3.50	5.84
21	ER2a	ExonRegion	0	1115.96	439.57	175.97	389.83	539.24	306.82	681.30	443.81	173.58	483.68	628.26	638.78	385.81	465.23	843.62	1396.40	449.46	403.51	625.23	917.29	779.07	992.46	693.66	266.69	529.19	1216.17	1136.00	497.24	510.39
22	E2_Da	NovelBoundary	0	2.48	0.00	1.40	0.00	0.00	1.53	0.00	0.00	0.00	2.04	0.00	1.42	0.00	1.06	0.00	12.78	1.96	0.00	0.00	0.00	1.60	0.00	1.82	0.00	1.70	8.02	0.00	1.80	0.00
23	E2a_E3a	KnownJunction	0	684.76	401.96	171.39	318.79	604.22	281.62	512.93	326.27	136.73	390.51	862.61	589.63	389.23	436.20	565.87	749.53	441.54	279.98	515.67	834.52	617.14	484.33	742.00	225.38	381.84	1461.96	1934.08	743.71	491.64
24	I2	Intron	0	11.46	0.93	0.97	0.00	0.71	3.38	1.46	1.06	0.32	0.42	0.34	0.18	0.00	2.81	3.59	12.60	1.29	3.43	3.23	3.47	4.12	0.78	0.00	0.00	0.21	2.27	2.91	1.41	0.00
25	I2_SR1	SilentIntronRegion	0	11.56	0.94	0.98	0.00	0.71	3.41	1.48	1.08	0.32	0.42	0.35	0.18	0.00	2.85	3.63	12.70	1.31	3.47	3.27	3.51	4.17	0.79	0.00	0.00	0.21	2.30	2.94	1.43	0.00
26	E3_Aa	NovelBoundary	0	31.91	9.70	7.13	0.00	0.00	3.30	0.00	2.54	1.13	7.95	0.00	7.41	0.00	9.97	16.74	32.66	7.20	5.39	0.00	3.14	17.85	4.96	0.00	0.00	1.86	12.06	4.47	6.20	0.00
27	E3a_E4b	KnownJunction	0	862.01	594.50	363.46	468.48	800.67	306.94	818.34	332.14	286.10	489.29	676.60	727.61	635.68	563.75	1021.51	1071.98	490.07	292.82	744.28	867.02	769.52	662.80	516.19	346.93	744.63	906.35	1589.52	764.10	639.64
28	E3a_E5a	KnownJunction	0	32.09	15.80	14.58	0.00	0.00	5.64	29.47	8.91	13.58	18.45	1.52	40.84	10.86	16.84	32.89	13.46	14.45	41.61	40.46	24.98	48.53	32.04	43.04	5.56	10.38	31.58	60.13	8.49	18.55
29	ER3a	ExonRegion	0	995.97	588.12	394.45	489.39	842.26	367.72	807.46	420.62	264.50	540.86	928.93	910.63	682.53	671.08	813.38	1054.05	654.93	310.39	639.01	1021.79	876.46	745.36	790.35	342.78	696.91	1496.92	2157.62	897.65	749.34
30	ER3b	ExonRegion	0	48.55	16.10	4.74	5.22	3.52	17.73	5.11	5.29	2.64	12.25	4.65	5.76	0.83	27.74	7.98	72.81	25.69	18.85	21.81	10.69	18.27	3.94	0.86	0.39	7.29	11.04	4.99	11.93	1.52
31	E3_Db	NovelBoundary	0	35.27	13.19	8.37	0.00	7.07	29.50	8.18	22.79	1.16	20.49	4.56	8.13	1.78	40.90	7.57	95.78	48.01	19.01	24.28	12.40	20.82	4.23	6.01	5.14	9.09	10.94	4.92	9.75	3.17
32	I3	Intron	0	26.16	21.66	3.31	6.00	7.89	18.31	5.59	4.14	6.17	10.32	7.46	12.00	1.00	23.10	24.98	79.55	35.82	18.32	28.34	19.15	20.17	2.65	1.83	4.55	11.17	6.30	8.66	9.19	3.88
33	I3_SR1	SilentIntronRegion	0	50.76	12.02	6.58	0.00	15.74	24.22	3.97	9.56	7.95	17.43	7.58	5.66	0.00	36.54	8.88	79.53	22.93	23.14	38.76	19.32	19.33	5.24	2.94	4.21	12.99	13.71	6.00	19.06	6.24
34	I3_AR1	ActiveIntronRegion	0	45.42	17.54	6.56	3.33	10.22	36.18	6.65	4.58	3.77	19.92	10.27	11.33	0.53	30.39	10.04	85.05	40.35	27.09	21.76	16.87	24.86	4.11	2.52	4.10	12.66	7.10	9.14	12.96	2.00
35	I3_SR2	SilentIntronRegion	0	25.06	15.23	2.93	5.01	7.44	11.42	2.58	2.80	1.97	11.82	8.07	10.23	0.91	21.47	20.76	72.40	25.67	18.93	27.65	24.76	19.02	1.69	2.12	2.52	8.69	4.60	12.00	8.39	2.42
36	I3_SR3	SilentIntronRegion	0	21.47	19.85	4.99	12.13	1.89	13.12	3.68	3.31	6.53	10.88	5.27	8.55	0.38	19.32	14.82	56.62	24.99	16.48	21.73	14.77	15.57	2.96	1.75	3.76	10.48	8.01	2.87	14.37	3.54
37	I3_AR3	ActiveIntronRegion	0	14.87	23.27	1.17	7.41	7.23	16.58	3.80	3.34	5.49	7.83	3.77	9.27	1.53	17.41	21.94	77.71	26.75	14.78	29.49	11.89	17.73	1.96	0.54	4.01	8.47	3.29	7.19	7.03	4.36
38	I3_SR4	SilentIntronRegion	0	8.57	14.23	0.00	0.00	0.00	1.83	0.00	0.00	2.25	0.00	0.00	4.54	0.00	13.00	13.07	32.90	16.70	4.55	7.54	0.94	0.00	0.00	3.62	0.00	10.48	4.71	0.00	0.00	0.00
39	I3_AR4	ActiveIntronRegion	0	24.87	25.60	2.40	4.78	9.25	17.16	7.63	4.65	8.17	7.24	8.56	15.39	1.27	23.96	36.64	89.23	45.57	17.15	31.92	22.38	21.76	2.47	1.96	5.81	12.56	6.55	10.35	6.58	4.70
40	E4_Aa	NovelBoundary	0	20.59	47.21	0.00	0.00	12.08	27.89	22.89	0.00	20.16	10.39	3.07	18.25	1.40	28.34	15.75	98.30	58.41	0.00	56.65	14.89	36.34	4.86	4.88	14.36	9.17	2.19	17.74	0.00	4.23
41	ER4a	ExonRegion	0	37.74	43.98	3.89	15.69	21.21	27.14	10.96	6.45	25.55	16.78	10.20	19.39	3.99	32.64	78.02	124.31	62.88	24.44	43.55	29.72	29.20	5.30	3.37	18.09	17.59	7.54	15.33	11.96	9.38
42	E4_Ab	KnownBoundary	0	31.03	45.08	14.18	46.81	25.05	39.86	8.64	0.00	38.89	13.22	10.50	13.46	1.97	42.78	104.04	175.72	101.45	9.25	40.46	47.63	32.93	2.43	0.00	29.91	12.20	16.31	11.18	20.40	8.81
43	ER4b	ExonRegion	0	1631.59	1298.57	386.28	1254.98	3194.35	475.78	816.27	714.84	455.47	665.55	879.68	1009.02	773.45	927.61	1160.46	1506.24	704.98	428.17	1117.07	1603.25	1242.85	1484.44	563.10	609.40	1221.37	1448.81	1694.21	858.15	757.53
44	E4_Da	NovelBoundary	0	23.42	35.39	3.96	8.63	21.37	16.77	8.75	1.89	11.18	2.04	4.02	11.69	3.03	11.57	60.99	49.34	41.78	24.66	0.00	23.57	11.79	2.48	0.00	10.95	5.04	14.12	6.41	7.82	8.55
45	E4a_E5a	KnownJunction	0	1433.94	956.51	202.08	1127.64	1801.62	304.91	717.65	629.94	368.26	653.99	901.36	1091.12	544.35	919.21	1144.49	1306.29	768.04	399.29	849.71	1268.52	822.46	1286.37	654.73	462.31	1060.10	1160.78	1596.18	762.94	598.93
46	I4	Intron	0	21.42	18.27	2.53	12.16	9.17	13.74	8.06	6.69	12.12	9.88	4.83	12.32	0.94	13.14	33.14	60.11	24.68	15.73	22.06	15.60	16.94	3.60	2.30	11.73	5.11	5.14	7.99	7.01	6.24
47	I4_AR1	ActiveIntronRegion	0	18.41	20.72	3.84	1.51	12.01	11.58	5.96	10.26	7.63	6.56	6.39	6.11	0.00	9.19	24.96	46.22	16.82	10.31	14.78	17.03	13.84	1.35	3.32	1.93	1.07	1.69	0.83	4.03	0.95
48	I4_AR2	ActiveIntronRegion	0	35.01	22.99	4.68	7.31	14.94	11.46	14.11	10.43	10.49	13.48	8.33	7.01	2.60	12.55	21.47	52.72	37.06	14.10	21.12	25.30	13.55	4.81	2.41	8.96	0.00	8.64	12.82	13.86	2.24
49	I4_AR3	ActiveIntronRegion	0	36.27	17.69	3.71	7.31	13.41	9.83	14.27	13.60	14.35	15.33	7.42	7.23	2.70	11.58	22.40	67.36	35.98	18.26	34.81	26.59	16.02	6.79	1.81	8.94	0.00	8.22	11.69	11.54	2.89
50	I4_SR1	SilentIntronRegion	0	23.73	17.39	2.93	9.41	6.24	7.70	9.96	12.85	13.49	8.16	6.07	10.40	2.11	8.86	25.83	45.44	25.40	18.53	17.84	9.55	14.81	6.79	2.21	5.26	6.46	10.28	7.36	8.80	7.20
51	I4_AR5	ActiveIntronRegion	0	19.95	18.08	2.03	15.23	9.88	17.11	7.14	2.98	12.08	10.96	3.85	14.41	0.46	15.77	38.69	69.16	24.77	15.24	24.89	17.86	18.48	2.37	2.20	16.33	5.35	3.02	9.08	6.27	6.77
52	E5_Aa	NovelBoundary	0	21.65	26.47	3.99	10.78	0.00	8.79	5.26	1.99	11.54	5.71	0.00	22.53	0.00	18.97	43.45	67.55	30.82	18.88	24.28	11.50	20.94	0.00	2.51	8.08	3.45	8.71	11.73	4.36	5.71
53	ER5a	ExonRegion	0	1545.88	1104.58	339.04	935.69	1346.59	405.59	972.68	823.17	610.17	788.36	1028.96	1230.53	796.24	1014.44	1312.81	1457.44	926.29	485.85	1157.85	1363.43	1203.98	1532.41	840.78	538.56	1344.05	1783.15	1854.52	922.66	941.45
54	E5_Da	NovelBoundary	0	13.09	26.37	2.57	0.00	6.78	9.17	2.52	2.09	4.45	7.75	1.55	9.85	0.00	6.58	0.00	10.94	10.42	4.62	24.28	3.14	19.57	4.67	0.00	2.45	1.93	2.19	0.00	6.20	3.33
55	E5a_E6a	KnownJunction	0	1874.62	1981.86	342.65	894.26	1379.69	698.75	1224.68	906.63	1102.17	850.12	1049.26	1293.38	1241.04	1120.30	1645.58	1895.79	1054.60	568.18	1244.67	1530.27	2147.03	1872.40	917.18	737.47	1891.72	2478.89	2607.93	1299.15	1380.20
56	I5	Intron	0	12.68	7.58	0.27	0.00	1.56	4.84	2.26	1.47	4.75	4.62	0.95	3.75	0.93	4.63	10.74	25.07	5.49	6.26	8.17	3.08	6.39	1.73	1.45	3.78	4.80	3.52	2.93	3.13	2.25
57	I5_AR1	ActiveIntronRegion	0	12.16	9.36	0.00	0.00	1.63	7.79	4.70	1.84	6.72	4.81	0.79	3.08	0.87	4.38	13.18	34.17	6.97	5.89	10.65	1.84	7.61	2.40	1.21	4.30	5.24	2.62	1.83	3.26	1.79
58	I5_AR2	ActiveIntronRegion	0	13.37	6.05	0.52	0.00	1.53	2.15	0.00	1.15	2.98	4.52	1.12	4.44	1.01	4.95	8.66	16.99	4.19	6.73	6.00	4.31	5.35	1.13	1.70	3.37	4.47	4.43	4.01	3.06	2.69
59	E6_Aa	NovelBoundary	0	17.05	4.46	1.10	0.00	35.22	8.98	5.84	5.08	13.52	11.30	0.00	1.45	3.44	7.44	0.00	28.53	15.49	4.62	16.18	11.25	8.54	3.94	0.00	5.98	12.69	2.15	2.34	0.00	9.01
60	ER6a	ExonRegion	0	1682.39	1449.33	270.91	750.66	1177.85	393.19	803.47	876.15	626.24	719.78	847.81	1142.30	820.79	935.32	1619.09	1558.64	880.74	446.11	1343.32	1459.04	1079.85	1906.90	681.16	538.10	1347.36	1705.11	1855.53	926.39	1036.93
61	E6_Da	KnownBoundary	0	1508.32	1329.29	300.30	1339.45	2331.86	445.26	678.34	572.11	634.51	607.29	673.59	1041.52	765.41	711.83	1947.55	1835.36	1097.42	261.48	1383.59	1623.55	859.32	1581.23	459.84	502.99	905.95	1406.55	1827.28	775.74	1074.26
62	ER6b	ExonRegion	0	1132.45	1289.29	306.33	1099.14	1875.04	364.32	667.11	470.68	460.79	581.63	704.60	940.68	642.14	698.81	1618.35	1474.43	759.39	327.33	1287.14	1403.21	822.38	1110.30	414.50	421.05	931.66	1267.17	1837.94	793.46	923.70
63	E6_Db	KnownBoundary	0	643.65	1091.76	158.61	789.65	1210.21	227.06	488.21	175.82	327.85	359.47	576.73	722.85	344.72	578.86	1783.91	1233.70	474.52	266.49	1043.70	1326.83	585.89	436.05	305.99	245.06	502.70	517.89	1506.53	428.96	408.61
64	ER6c	ExonRegion	0	774.25	1061.80	150.01	749.55	968.45	261.35	486.35	346.83	524.35	421.41	597.11	689.88	420.35	579.42	2046.02	1218.57	507.94	252.28	1071.74	1041.89	605.10	703.91	280.20	395.39	640.83	673.79	1395.74	453.82	446.67
65	IG25	Intergenic	0	1.16	5.00	1.25	1.74	1.64	2.26	0.94	1.27	3.68	2.89	3.22	3.96	0.74	2.02	2.26	3.17	3.26	1.16	4.24	0.90	3.30	1.45	1.22	2.17	1.17	2.08	6.88	3.14	1.53
66	IG25_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	3.60	0.95	0.00	0.00	1.83	1.72	0.65	0.12	0.39	0.00	0.00	4.04	1.62	0.00	0.82	0.00	0.77	2.38	0.00	0.00	0.00	0.00	1.99	0.00	0.39
67	IG25_SR2	SilentIntergenicRegion	0	0.69	3.20	0.20	1.15	1.67	1.84	0.99	1.46	5.19	2.00	2.12	2.68	0.66	1.47	2.02	3.10	3.22	0.62	4.17	0.96	2.42	1.12	0.95	2.65	1.20	1.36	3.11	4.15	1.64
68	IG25_AR2	ActiveIntergenicRegion	0	0.00	6.30	0.00	6.70	0.00	5.65	5.15	0.66	3.93	3.65	13.26	9.52	0.14	2.17	2.49	5.83	5.73	0.00	12.57	4.45	12.40	0.00	1.81	4.66	0.00	2.14	26.76	4.03	3.65
69	IG25_AR3	ActiveIntergenicRegion	0	0.00	6.57	0.00	7.31	0.00	6.87	4.20	0.00	1.03	3.25	13.59	7.42	0.00	2.72	0.00	7.17	7.18	1.14	15.84	1.17	4.64	0.75	2.26	4.30	0.00	1.57	7.33	2.99	1.45
70	IG25_AR4	ActiveIntergenicRegion	0	1.93	8.47	1.55	0.05	2.74	2.73	1.21	1.24	3.08	3.92	5.70	7.79	1.31	2.93	3.31	2.75	4.05	1.48	5.93	1.55	3.58	1.30	0.77	1.97	1.08	3.21	12.37	2.71	2.26
71	IG25_SR3	SilentIntergenicRegion	0	1.68	6.39	2.90	3.46	0.88	2.58	0.61	1.22	2.00	3.79	3.29	4.01	0.62	2.59	2.38	3.27	2.97	2.01	3.31	0.41	4.42	2.01	1.96	1.69	1.40	2.84	9.38	2.20	1.05