Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	COX7B	Gene	0	585.85	236.12	80.29	395.63	414.74	270.66	1024.23	1016.72	290.04	203.14	167.32	313.21	330.17	165.88	1182.11	352.22	187.51	125.93	795.63	381.14	156.42	597.22	252.94	164.10	260.94	388.12	291.63	769.46	343.94
2	373335	Transcript	0	17.47	5.13	0.93	0.53	2.06	7.94	16.49	17.68	5.61	7.07	2.45	8.69	13.87	5.06	41.01	9.48	2.32	7.79	7.52	25.11	5.83	11.49	3.84	2.70	10.81	11.63	0.36	4.31	12.08
3	481445	Transcript	0	53.67	39.07	45.34	221.37	165.62	46.42	113.73	52.93	38.78	30.21	29.27	27.22	31.50	27.79	173.77	31.10	24.93	16.68	111.42	75.27	20.97	46.30	20.25	39.68	32.28	31.27	38.71	77.62	33.53
4	475465	Transcript	0	8.81	8.99	5.56	17.08	15.15	16.83	10.13	9.75	10.57	14.84	3.87	10.71	3.59	12.38	23.29	13.05	23.98	29.87	24.84	12.00	9.39	0.74	2.86	7.05	9.22	8.18	4.55	16.28	4.11
5	IG40_AR3	ActiveIntergenicRegion	0	1.53	0.00	0.00	0.00	2.85	0.00	11.23	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	4.34	0.00	0.00	0.00	2.41	0.00	1.80	1.55	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	424.33	80.35	38.63	226.97	984.43	92.95	602.55	341.10	80.72	124.78	91.64	89.01	125.40	24.98	362.32	198.27	53.59	61.83	244.39	85.73	37.42	299.81	90.76	43.85	85.70	92.97	141.80	199.49	42.79
7	ER1b	ExonRegion	0	5060.26	1886.32	825.00	4202.08	4242.09	2082.24	9055.14	9674.76	2285.29	1766.24	1425.07	2995.81	2831.98	1236.05	9871.94	3487.95	1720.25	1076.91	6943.18	2532.83	1348.87	5357.10	2515.30	941.92	2247.93	3606.36	2671.80	7268.81	3014.13
8	E1_Da	NovelBoundary	0	8.32	0.00	1.17	0.00	0.00	0.00	4.52	4.63	3.41	1.52	0.00	0.00	0.00	1.09	0.00	3.75	1.35	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.20	9.51
9	E1a_E2a	KnownJunction	0	3.01	0.00	0.00	0.00	0.00	3.18	0.00	1.99	3.17	2.04	1.27	3.95	4.65	0.00	18.14	0.00	0.00	0.00	0.00	8.19	1.76	7.29	2.31	0.00	4.85	0.00	0.00	2.25	1.22
10	E1a_E3a	KnownJunction	0	1190.03	487.76	256.47	1041.58	594.64	441.76	2422.42	1836.36	931.91	453.90	227.10	635.92	1330.01	367.27	2977.64	286.26	298.54	311.70	1269.84	663.58	301.19	1238.04	349.72	404.11	546.46	1322.36	519.39	2874.94	1571.87
11	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.88	5.44	14.33	0.00	0.00	0.00	1.54	1.37	0.00	0.00	0.00	0.95	0.00	0.00	3.31	0.00	0.00	0.00	2.99	0.00	4.08	0.00	0.00	4.85
12	I1	Intron	0	9.01	6.37	1.74	3.87	8.78	7.21	3.33	2.85	2.16	5.19	3.46	3.86	0.72	6.53	4.33	7.42	10.09	11.85	14.58	5.51	4.97	2.14	0.45	3.64	2.98	3.11	2.63	6.33	2.71
13	I1_AR1	ActiveIntronRegion	0	11.45	4.52	2.10	6.76	7.65	8.06	6.34	3.28	3.17	5.74	3.49	4.59	0.95	6.86	0.48	9.72	15.63	13.79	17.40	7.05	6.11	4.34	1.14	4.51	2.70	6.58	1.53	12.29	5.95
14	I1_SR1	SilentIntronRegion	0	7.75	7.35	1.56	2.36	9.37	6.78	1.77	2.62	1.63	4.90	3.46	3.48	0.60	6.37	6.35	6.22	7.20	10.85	13.13	4.70	4.38	0.99	0.10	3.18	3.13	1.29	3.21	3.22	1.02
15	E2_Aa	NovelBoundary	0	13.68	23.75	5.31	10.57	5.60	4.91	2.63	0.00	1.80	5.59	1.61	2.35	0.00	7.89	0.00	0.00	8.04	0.00	8.09	3.80	1.80	2.48	0.00	8.08	3.79	1.97	1.94	2.29	0.00
16	ER2a	ExonRegion	0	29.04	15.39	2.78	1.59	6.19	12.49	19.83	32.55	10.77	12.13	2.93	10.32	11.37	10.25	39.52	14.90	2.92	23.37	14.45	40.66	9.31	22.75	2.80	5.52	13.90	17.73	1.08	8.97	14.57
17	E2_Da	NovelBoundary	0	19.76	0.00	7.03	0.00	0.00	5.37	2.23	4.08	1.86	1.72	0.00	9.76	1.85	5.63	8.97	12.09	8.35	9.25	8.09	3.89	1.80	1.99	0.00	2.93	5.30	11.97	1.94	6.47	0.00
18	E2a_E3a	KnownJunction	0	20.35	0.00	0.00	0.00	0.00	8.13	29.64	18.51	2.89	7.03	3.16	11.81	25.60	4.94	65.38	13.54	4.03	0.00	8.09	26.46	6.42	4.42	6.40	2.57	13.68	17.17	0.00	1.71	20.44
19	I2	Intron	0	10.66	10.41	0.59	8.48	3.47	13.17	4.53	3.92	4.18	6.32	1.55	5.11	1.84	8.07	8.04	15.36	12.72	11.70	17.39	9.98	6.58	0.64	0.43	7.89	3.21	1.86	1.73	4.44	3.24
20	I2_SR2	SilentIntronRegion	0	10.73	10.47	0.60	8.54	3.49	13.26	4.56	3.95	4.21	6.37	1.56	5.15	1.85	8.12	8.10	15.45	12.81	11.78	17.51	10.05	6.63	0.64	0.43	7.95	3.24	1.87	1.75	4.47	3.26
21	E3_Aa	NovelBoundary	0	3.01	23.17	11.73	0.00	14.30	3.80	8.01	0.00	7.58	1.64	0.00	1.33	0.00	7.69	8.37	11.25	27.21	9.25	8.09	6.95	3.21	2.09	0.00	11.42	0.00	3.52	15.21	10.83	7.36
22	ER3a	ExonRegion	0	6374.59	2139.89	67.18	760.28	297.30	2569.99	8628.83	11096.01	2839.91	1525.26	1019.56	2021.62	2621.56	1418.03	9771.28	3376.56	1176.71	1091.89	6771.04	3614.28	1532.87	6502.19	1430.30	1527.45	2433.89	2561.97	878.74	2981.15	2285.78
23	E3_Da	KnownBoundary	0	13.98	24.33	0.00	0.00	0.00	10.63	9.90	6.27	7.80	28.16	4.84	12.77	3.09	9.51	50.03	6.27	39.91	23.50	40.46	3.23	1.52	2.48	2.27	8.73	11.29	5.88	0.00	7.91	7.43
24	E3a_E4a	KnownJunction	0	1716.77	1202.09	25.39	595.53	239.92	1474.20	20002.92	3237.62	1887.99	3605.73	3387.08	4291.22	4145.18	1539.53	20889.49	4034.39	2482.64	1196.07	10781.86	1609.49	821.82	1466.78	4084.42	837.84	2296.03	4993.32	2214.17	8911.22	4459.33
25	ER3b	ExonRegion	0	8.81	8.99	5.56	17.08	15.15	16.83	10.13	9.75	10.57	14.84	3.87	10.71	3.59	12.38	23.29	13.05	23.98	29.87	24.84	12.00	9.39	0.74	2.86	7.05	9.22	8.18	4.55	16.28	4.11
26	E3_Db	NovelBoundary	0	2.18	4.46	8.45	0.00	6.19	8.48	13.45	4.23	15.07	8.43	2.85	3.76	4.17	4.96	32.29	6.27	14.18	0.00	7.87	0.00	11.51	4.38	4.19	10.35	6.36	15.23	0.00	13.61	6.24
27	I3	Intron	0	11.69	14.48	0.56	4.21	6.96	8.30	7.44	5.72	6.82	5.21	1.90	5.44	1.41	5.92	19.92	11.90	10.27	7.22	16.61	5.75	5.50	2.27	0.61	11.55	3.72	1.71	2.00	4.51	1.57
28	I3_SR3	SilentIntronRegion	0	3.94	14.09	0.68	7.31	6.10	6.45	2.06	4.51	5.98	1.47	0.00	2.52	0.39	0.19	12.19	2.94	2.45	3.67	14.99	1.53	4.66	1.47	0.00	4.39	3.50	0.64	1.12	2.99	0.68
29	I3_AR3	ActiveIntronRegion	0	17.15	14.80	0.48	2.05	7.59	9.63	11.23	6.58	7.42	7.84	3.23	7.49	2.12	9.95	25.38	18.21	15.77	9.72	17.80	8.72	6.11	2.83	1.03	16.59	3.88	2.47	2.62	5.59	2.20
30	E4_Aa	NovelBoundary	0	15.87	26.27	3.04	27.61	0.00	7.37	23.63	2.54	25.82	10.71	3.99	14.31	3.18	18.46	57.20	48.04	26.43	18.49	40.46	7.86	3.77	4.23	2.07	15.73	13.83	1.80	9.04	7.91	8.98
31	ER4a	ExonRegion	0	2021.27	1212.10	307.45	839.29	3100.09	1282.39	6308.99	3279.56	1474.47	1299.16	1385.17	2605.35	2502.87	1066.63	7402.91	1215.05	1434.30	565.20	4395.91	2186.86	607.47	2051.44	2311.96	1029.86	1271.67	3379.19	3670.91	9055.73	3124.79
32	E4_Da	KnownBoundary	0	1123.44	580.15	1013.94	1212.19	1709.66	741.76	2163.46	1344.57	807.51	329.31	246.12	509.27	717.87	498.81	3154.03	459.99	398.10	263.92	1544.76	1146.95	309.97	1212.32	310.57	565.20	402.45	367.26	666.89	1103.11	683.54
33	ER4b	ExonRegion	0	53.67	39.07	45.34	221.37	165.62	46.42	113.73	52.93	38.78	30.21	29.27	27.22	31.50	27.79	173.77	31.10	24.93	16.68	111.42	75.27	20.97	46.30	20.25	39.68	32.28	31.27	38.71	77.62	33.53
34	IG41_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.57	5.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	IG41_SR1	SilentIntergenicRegion	0	0.00	0.43	0.21	0.92	1.25	0.70	1.20	0.48	0.64	0.36	0.20	0.50	0.58	0.51	3.60	1.00	1.59	0.00	0.48	0.64	0.18	0.08	0.08	1.47	0.43	0.20	0.08	3.99	0.48
36	IG41_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	4.12	4.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	0.00	7.14	0.00	2.81	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
37	IG41_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	2.81	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.21	0.00	6.71	0.00	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00