Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TIMM8A	Gene	0	52.15	57.34	33.74	70.65	86.03	46.46	106.91	53.43	30.91	40.08	31.05	53.04	35.75	21.45	101.50	46.88	26.73	31.78	106.78	50.25	74.90	62.39	38.48	24.04	25.73	36.04	67.09	68.53	40.44
2	372902	Transcript	0	139.58	75.21	25.44	53.88	59.94	69.37	116.26	167.44	42.34	44.97	35.26	61.16	44.59	30.33	161.04	74.52	30.84	49.58	123.57	95.47	106.72	207.14	38.85	46.37	44.18	58.28	56.39	63.89	50.45
3	480575	Transcript	1	22.89	10.68	8.04	12.43	7.87	16.26	28.54	15.43	7.38	9.41	4.01	10.67	7.06	4.06	14.55	18.52	9.40	7.45	9.58	13.65	16.55	19.06	7.97	9.42	9.99	16.16	6.00	3.97	12.13
4	IG35	Intergenic	0	3.50	1.79	2.39	2.93	1.99	3.08	2.47	2.25	3.43	5.89	1.21	6.16	1.05	4.52	7.30	14.98	3.96	7.07	3.91	10.68	1.16	0.74	1.11	1.76	1.46	6.73	4.48	4.32	19.25
5	IG35_SR1	SilentIntergenicRegion	0	3.53	1.80	2.41	2.95	2.01	3.11	2.49	2.27	3.46	5.94	1.22	6.21	1.06	4.56	7.36	15.10	3.99	7.13	3.94	10.77	1.17	0.74	1.12	1.77	1.47	6.79	4.52	4.36	19.40
6	ER1a	ExonRegion	0	10.72	5.12	7.49	7.35	5.07	2.92	4.74	3.72	2.39	3.32	1.60	4.83	1.76	4.82	10.48	10.65	4.12	7.19	5.89	8.88	2.46	7.30	1.46	1.71	2.16	13.03	6.89	3.07	12.12
7	E1_Ab	KnownBoundary	0	11.92	9.60	2.72	0.00	0.00	7.40	9.78	4.43	3.90	5.47	1.36	7.56	5.73	7.38	6.98	14.08	9.75	4.62	0.00	14.97	4.05	6.95	2.31	0.00	1.67	17.98	4.87	4.13	10.20
8	ER1b	ExonRegion	0	154.31	70.41	123.69	233.60	272.42	77.57	252.79	177.29	36.91	60.48	43.12	107.99	78.54	36.12	190.16	113.78	58.12	63.68	149.71	75.19	109.64	247.94	113.49	37.02	44.15	128.97	91.98	190.18	99.94
9	E1_Da	NovelBoundary	0	5.96	4.85	4.88	19.84	0.00	3.64	7.15	2.54	1.37	1.64	1.52	15.90	0.00	2.24	0.00	9.18	4.39	0.00	0.00	3.97	3.81	7.05	0.00	2.81	1.59	9.57	0.00	4.13	12.15
10	E1a_E2a	KnownJunction	1	32.62	12.31	3.69	8.63	0.00	19.95	33.13	17.27	5.73	7.75	1.46	6.05	7.87	3.06	16.94	27.00	11.50	4.88	0.00	22.33	17.61	27.23	6.60	11.60	10.84	18.45	0.00	1.89	12.68
11	E1a_E3a	KnownJunction	0	321.77	95.98	22.17	37.96	24.91	113.26	142.81	411.22	61.15	51.45	38.91	79.46	61.81	44.62	263.30	128.67	39.57	84.64	137.57	170.44	160.52	517.43	48.12	89.96	82.06	114.15	20.43	56.75	71.08
12	I1	Intron	0	2.50	1.25	0.65	5.58	1.90	1.07	0.78	1.43	1.09	2.81	0.46	5.29	0.00	1.41	7.87	1.66	0.58	4.50	1.24	0.00	3.89	2.11	0.00	1.67	0.00	1.22	0.71	0.63	7.31
13	I1_AR1	ActiveIntronRegion	0	2.54	1.27	0.66	5.67	1.93	1.09	0.80	1.46	1.11	2.85	0.47	5.36	0.00	1.43	7.99	1.69	0.59	4.57	1.26	0.00	3.95	2.14	0.00	1.70	0.00	1.24	0.72	0.64	7.42
14	E2_Aa	NovelBoundary	0	5.84	0.00	6.60	0.00	0.00	5.79	5.09	4.68	4.05	10.59	0.00	7.56	6.66	4.36	9.57	7.27	2.23	0.00	8.09	4.13	5.70	11.52	0.00	0.00	5.46	9.01	0.00	4.58	11.09
15	ER2a	ExonRegion	0	13.15	9.04	12.39	16.22	15.75	12.57	23.94	13.60	9.04	11.07	6.56	15.29	6.26	5.06	12.16	10.03	7.30	10.03	19.16	4.97	15.50	10.89	9.34	7.23	9.15	13.86	12.00	6.05	11.57
16	E2_Da	NovelBoundary	0	9.79	42.46	3.84	0.00	12.97	19.64	29.92	11.15	18.03	11.74	5.35	5.99	4.52	1.99	23.12	6.04	6.35	9.25	48.55	22.33	22.86	13.81	12.95	7.48	13.11	15.36	14.86	12.09	5.55
17	I2	Intron	0	3.66	4.93	3.81	6.53	3.89	8.92	12.39	1.47	4.53	4.61	3.25	6.89	1.91	2.32	7.65	9.29	1.53	4.68	15.64	6.50	8.61	2.05	3.71	4.90	4.07	3.76	8.34	1.86	4.19
18	I2_SR1	SilentIntronRegion	0	3.87	6.39	5.37	7.34	6.92	12.55	19.27	0.77	3.32	4.53	3.17	9.71	2.66	1.61	11.96	9.75	2.09	5.60	17.66	9.25	10.86	2.26	4.45	6.12	3.70	4.05	6.86	1.28	3.29
19	I2_AR5	ActiveIntronRegion	0	3.43	3.19	1.95	5.58	0.27	4.60	4.19	2.31	6.02	4.72	3.37	3.53	1.02	3.19	2.51	8.76	0.86	3.59	13.29	3.23	5.94	1.81	2.83	3.45	4.53	3.42	10.16	2.55	5.28
20	E3_Aa	NovelBoundary	0	13.45	3.49	10.19	9.71	14.74	1.96	9.84	9.01	4.48	2.04	7.72	9.25	3.95	1.37	8.37	6.04	3.38	9.25	24.28	3.72	3.93	4.38	4.92	0.00	5.61	8.54	4.57	4.13	1.58
21	ER3a	ExonRegion	0	86.27	124.52	46.66	116.34	149.85	91.94	201.23	87.38	63.50	80.14	65.27	99.20	70.20	41.55	209.35	84.23	48.82	56.91	227.26	107.08	157.18	96.69	66.99	47.45	48.32	47.67	141.85	131.86	68.14
22	IG34	Intergenic	0	7.05	34.21	9.67	12.16	58.10	18.86	10.88	12.25	27.44	32.91	20.85	28.87	15.66	11.55	25.18	18.86	18.10	8.99	34.39	12.84	51.93	5.51	8.13	18.46	12.08	21.40	56.94	68.86	20.96
23	IG34_AR5	ActiveIntergenicRegion	0	1.53	19.71	0.00	0.00	17.79	4.12	0.00	0.00	1.44	8.66	13.09	6.54	2.60	2.07	5.60	0.36	1.57	0.00	0.00	2.81	13.45	1.29	0.00	4.30	10.62	6.74	5.49	12.11	6.90
24	IG34_SR3	SilentIntergenicRegion	0	3.05	46.48	8.79	9.42	36.45	15.53	5.54	6.16	16.69	24.50	12.84	23.23	11.48	5.95	15.40	8.80	15.49	7.17	31.29	8.70	38.26	4.72	4.54	10.97	9.20	25.60	30.30	84.67	15.78
25	IG34_SR2	SilentIntergenicRegion	0	3.69	11.92	10.95	12.35	52.17	16.58	9.72	6.98	11.80	24.88	27.89	24.46	7.14	5.46	7.00	10.64	11.82	4.65	19.82	7.60	44.24	4.35	7.48	12.60	12.31	21.12	55.56	53.41	15.45
26	IG34_AR2	ActiveIntergenicRegion	0	14.05	53.16	16.52	21.59	106.55	32.33	19.49	24.88	52.30	57.37	37.16	51.41	28.20	22.28	45.74	36.65	32.52	16.40	55.64	23.29	92.04	9.51	15.24	33.19	20.45	33.04	106.58	107.89	38.36
27	IG34_SR1	SilentIntergenicRegion	0	1.23	5.65	0.68	1.33	10.06	3.97	3.86	0.69	5.49	8.62	2.74	3.56	4.14	2.82	10.30	4.49	1.97	1.46	13.49	3.32	9.69	1.05	1.25	6.09	2.70	2.87	9.82	8.73	2.45
28	IG34_AR1	ActiveIntergenicRegion	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.73	0.00	0.00	0.77	0.00	0.00	0.00	0.38	0.00	0.00	0.00	2.16	0.00	0.41	0.00	1.44	0.00	0.00	1.65	0.00