Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C9orf140	Gene	0	20.65	19.35	29.74	27.40	26.51	44.86	16.16	43.10	30.79	68.46	21.23	59.90	18.76	39.39	14.71	19.94	12.22	57.09	46.17	5.43	83.01	68.47	66.64	44.76	14.40	24.90	20.13	101.98	9.25
2	409687	Transcript	0	0.00	0.00	0.00	0.00	2.30	0.74	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.83	0.00	0.00	0.00	0.00	0.00	0.75	0.00
3	359018	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	2.30	0.74	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.83	0.00	0.00	0.00	0.00	0.00	0.75	0.00
5	ER1b	ExonRegion	0	4.10	1.59	1.87	8.67	6.82	11.57	3.94	5.39	0.70	5.58	0.50	8.10	1.86	5.82	2.93	5.37	2.20	11.52	8.62	0.16	19.87	17.33	7.92	4.44	0.88	7.81	0.40	20.53	0.79
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	1.40	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	1	17.05	0.00	26.06	9.49	14.74	24.21	2.23	31.80	5.06	26.48	1.36	43.98	7.61	23.15	9.97	27.39	11.64	36.99	24.28	3.47	38.31	68.99	32.21	27.46	8.30	21.59	6.41	84.07	3.53
8	E2_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	1.57	0.00	0.00	0.00	1.84	0.00	0.00	0.00	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	25.78	9.27	25.32	13.01	16.09	39.94	19.50	24.24	4.63	36.46	7.73	50.47	11.14	30.43	5.35	17.94	11.88	52.63	19.71	4.88	51.35	50.27	48.13	27.11	10.89	18.96	7.39	70.93	5.88
10	E2a_E3a	KnownJunction	1	33.03	4.85	20.26	27.82	51.14	64.92	8.01	27.12	8.83	40.42	8.86	44.85	16.81	46.88	0.00	32.05	4.68	46.23	15.96	3.80	46.09	71.81	69.15	33.50	14.24	30.68	8.95	104.47	8.65
11	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER3a	ExonRegion	0	25.04	8.49	23.27	18.95	20.03	45.56	13.97	34.28	11.34	57.85	7.77	57.86	9.45	37.66	7.58	19.18	14.45	74.49	34.88	6.46	67.49	76.99	82.22	44.59	10.10	21.75	5.54	84.94	8.35
13	E3a_E4a	KnownJunction	0	26.84	14.15	26.16	0.00	13.85	38.52	18.54	36.58	7.16	60.04	11.89	61.66	8.63	30.35	8.57	23.71	11.75	89.64	80.92	11.00	89.05	81.58	75.01	54.49	13.18	10.69	18.93	90.00	4.59
14	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.68	0.00	0.00	0.00	0.00	2.29	0.00
15	ER4a	ExonRegion	0	19.07	7.24	34.46	4.27	25.00	44.01	14.26	29.68	8.46	53.07	9.65	48.36	12.55	46.80	15.66	24.70	8.72	83.75	36.12	6.84	78.86	82.99	61.56	38.22	8.51	19.24	12.79	97.17	3.48
16	E4_Da	NovelBoundary	0	4.95	0.00	0.00	0.00	0.00	3.80	0.00	2.24	1.40	5.71	0.00	1.23	0.00	1.13	9.97	0.00	1.08	0.00	0.00	0.00	2.05	2.43	0.00	0.00	0.00	0.00	0.00	16.00	0.00
17	E4a_E5a	KnownJunction	0	10.20	3.78	37.90	8.20	46.42	35.53	15.85	49.87	5.45	57.84	4.49	39.07	10.89	33.92	17.94	24.79	10.44	56.12	16.18	0.00	69.43	103.36	84.41	24.11	10.57	31.50	6.46	96.65	9.54
18	E4a_E6a	NovelJunction	0	0.00	0.00	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	0.00	0.00	0.00	4.62	0.00	0.00	0.00	2.48	2.07	2.57	0.00	0.00	4.17	1.98	0.00
19	I4	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.13	0.00	1.40	0.00	0.00	2.11	0.00	0.00	0.00	0.00	0.00
20	I4_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.19	0.00	1.40	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
21	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.68	0.00	0.00	0.90	5.39	0.00	0.00	5.82	0.00	0.00	2.51	0.00	0.00	0.00	8.40	0.00
22	ER5a	ExonRegion	0	24.75	10.16	38.04	19.06	21.25	34.65	16.68	44.53	12.06	68.57	16.51	52.68	13.06	38.00	4.16	19.77	13.04	71.61	34.62	3.60	74.20	83.47	84.12	46.76	14.29	22.22	13.89	113.50	6.63
23	E5_Da	NovelBoundary	0	0.00	0.00	1.22	0.00	0.00	1.92	0.00	4.48	1.31	3.40	0.00	1.54	0.00	1.06	0.00	0.00	1.40	0.00	8.09	0.00	5.78	0.00	0.00	2.45	5.64	0.00	0.00	1.98	0.00
24	E5a_E6a	KnownJunction	0	25.30	4.85	48.76	41.84	38.76	47.31	21.68	45.78	30.21	68.43	20.53	77.50	25.16	50.69	9.17	37.41	17.83	64.73	8.09	6.62	69.23	109.34	67.18	54.43	12.31	18.07	19.23	106.22	7.99
25	I5	Intron	0	2.92	0.00	0.00	0.00	3.32	0.93	0.00	6.26	0.00	0.00	0.00	0.00	0.00	0.62	3.14	0.00	0.00	3.93	2.17	0.00	3.88	0.00	0.00	1.46	0.00	0.00	0.00	2.24	0.00
26	I5_SR1	SilentIntronRegion	0	3.83	0.00	0.00	0.00	3.68	1.37	0.00	7.50	0.00	0.00	0.00	0.00	0.00	0.67	4.67	0.00	0.00	3.31	3.88	0.00	3.19	0.00	0.00	1.69	0.00	0.00	0.00	2.45	0.00
27	I5_AR1	ActiveIntronRegion	0	1.87	0.00	0.00	0.00	3.05	0.40	0.00	4.99	0.00	0.00	0.00	0.00	0.00	0.59	1.26	0.00	0.00	5.02	0.00	0.00	5.06	0.00	0.00	1.25	0.00	0.00	0.00	2.10	0.00
28	E6_Aa	NovelBoundary	0	2.95	0.00	0.00	9.06	0.00	3.41	8.75	2.54	2.83	2.04	1.49	0.00	0.00	6.62	9.97	7.65	0.00	20.04	0.00	0.00	9.11	2.29	0.00	0.00	0.00	1.93	0.00	2.29	1.62
29	ER6a	ExonRegion	0	24.45	25.96	37.06	34.75	32.80	54.32	19.42	54.81	42.63	87.58	28.67	74.84	24.56	48.48	19.03	23.74	14.87	66.64	58.75	6.80	102.45	81.05	81.47	56.32	18.59	30.21	27.24	125.44	12.03