Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C9orf16	Gene	0	380.52	97.73	150.60	250.80	369.86	109.93	260.97	208.42	278.01	129.29	78.08	153.19	212.27	121.83	549.84	264.94	151.71	212.89	123.72	203.08	112.40	485.32	139.06	197.44	243.12	267.95	70.14	111.04	298.66
2	372994	Transcript	0	365.15	105.42	118.37	148.07	204.58	104.43	234.98	229.79	260.27	133.52	84.20	117.02	169.94	95.12	438.74	171.26	99.75	182.66	131.76	235.24	103.63	608.43	115.40	226.60	231.31	257.72	53.12	98.62	269.78
3	492588	Transcript	0	37.17	8.95	7.40	30.27	23.71	6.89	14.08	3.37	13.58	10.25	11.73	23.00	5.87	18.74	59.16	13.70	37.07	20.63	10.33	5.16	7.85	9.18	4.12	17.65	20.54	18.97	6.28	8.64	7.28
4	489240	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	4.84	1.87	0.00	1.86	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	1.52
5	486420	Transcript	0	2.71	0.00	0.00	0.00	0.00	1.69	5.38	0.00	0.00	1.48	0.00	0.00	1.50	1.82	0.00	0.00	0.00	0.00	0.00	0.00	5.25	3.89	2.51	0.00	3.86	0.00	0.00	0.00	5.32
6	ER1a	ExonRegion	0	74.24	31.06	49.33	148.51	204.70	27.82	70.77	22.09	38.98	40.64	46.24	30.49	89.21	19.58	77.19	151.94	24.95	64.26	31.93	53.25	22.72	127.14	82.88	36.06	50.73	122.27	57.58	53.49	219.55
7	E1_Ab	KnownBoundary	0	142.10	56.33	101.53	309.52	556.77	48.15	156.94	47.18	61.18	79.81	97.21	68.55	187.05	47.88	182.98	281.67	56.09	65.24	80.92	111.64	48.89	227.92	156.66	85.42	114.79	310.53	108.19	126.80	478.83
8	ER1b	ExonRegion	0	384.44	149.57	309.32	1125.82	1454.17	227.71	517.87	184.27	451.21	326.52	155.30	271.43	606.58	127.07	754.34	1398.42	187.28	454.01	233.03	268.95	240.96	782.03	365.15	230.17	317.12	845.33	166.95	318.00	1183.88
9	E1_Ac	KnownBoundary	0	707.65	241.41	615.15	2141.39	3251.46	433.98	595.78	397.38	1064.83	374.41	189.17	522.13	1019.66	202.36	1548.31	1896.17	391.08	993.54	419.91	355.61	536.84	1317.29	437.29	327.25	456.90	892.91	196.11	373.65	1807.85
10	ER1c	ExonRegion	0	451.38	93.80	351.70	1037.67	1404.99	142.05	324.74	235.18	310.87	139.35	82.72	222.90	371.38	131.78	781.98	531.90	221.37	267.08	133.76	190.18	142.60	656.89	205.87	184.85	223.19	410.09	155.90	161.60	608.11
11	E1_Da	NovelBoundary	0	11.74	0.00	0.00	0.00	0.00	0.00	4.63	2.49	3.11	0.00	0.00	0.00	0.00	0.00	9.97	2.91	1.35	4.62	0.00	4.13	0.00	2.48	0.00	5.32	3.64	2.02	0.00	0.00	0.00
12	E1a_E2a	KnownJunction	0	10.97	8.43	1.37	0.00	0.00	1.53	9.90	0.00	4.32	2.04	1.61	1.72	6.78	2.26	8.97	6.58	3.83	4.62	0.00	18.19	3.89	14.34	0.00	9.15	0.00	4.16	0.00	2.29	1.35
13	E1a_E3a	KnownJunction	0	676.62	204.37	136.88	143.87	207.94	204.00	385.17	519.80	471.80	263.12	153.02	180.72	308.64	208.01	779.94	291.92	194.37	299.50	210.18	513.48	187.03	1213.29	141.99	467.34	410.49	387.30	62.07	142.34	435.61
14	ER1d	ExonRegion	0	463.07	149.97	165.03	140.91	135.27	147.72	287.71	395.62	290.39	162.81	98.23	158.65	256.85	150.64	537.01	190.39	168.83	215.81	119.59	349.60	123.55	881.82	118.09	322.09	259.20	313.00	54.88	114.73	349.22
15	I1	Intron	0	7.61	6.32	3.08	13.19	4.17	5.15	1.85	1.94	4.42	4.65	2.35	7.17	1.32	5.53	17.47	8.53	12.56	9.26	4.83	2.17	3.84	1.30	1.31	6.36	5.35	2.79	0.72	2.57	1.14
16	I1_AR1	ActiveIntronRegion	0	7.91	5.28	1.52	11.11	4.51	3.83	0.87	2.23	3.21	2.22	0.10	4.53	1.71	3.99	16.58	6.82	12.24	9.17	5.09	2.12	4.79	1.73	1.21	3.97	3.69	2.91	0.00	0.50	1.44
17	I1_SR1	SilentIntronRegion	0	7.40	7.12	4.24	14.77	3.93	6.14	2.59	1.72	5.33	6.47	4.03	9.16	1.03	6.70	18.16	9.83	12.83	9.36	4.65	2.22	3.15	0.98	1.38	8.16	6.61	2.71	1.26	4.12	0.92
18	E2_Aa	NovelBoundary	0	25.60	24.04	16.69	10.57	7.37	14.58	11.21	14.03	22.17	18.41	9.46	11.81	1.37	13.07	7.97	24.86	47.88	9.25	8.09	3.47	3.85	2.19	0.00	13.64	10.80	2.02	0.00	11.82	10.76
19	ER2a	ExonRegion	0	34.98	27.13	4.83	16.19	14.06	21.50	20.23	12.64	30.07	22.98	10.42	19.37	11.00	21.95	57.41	28.95	31.56	34.38	23.28	14.13	17.23	27.36	3.84	15.62	31.15	27.73	14.11	13.51	13.40
20	E2_Da	KnownBoundary	0	29.08	26.76	4.53	19.63	0.00	6.68	5.72	13.19	25.73	9.19	3.04	17.02	6.75	17.26	31.89	18.28	33.97	27.61	16.18	12.32	5.33	15.12	2.07	14.59	17.65	13.48	12.37	10.92	10.23
21	E2a_E3a	KnownJunction	0	2.71	0.00	0.00	0.00	0.00	1.69	5.38	0.00	0.00	1.48	0.00	0.00	1.50	1.82	0.00	0.00	0.00	0.00	0.00	0.00	5.25	3.89	2.51	0.00	3.86	0.00	0.00	0.00	5.32
22	ER2b	ExonRegion	0	33.21	14.63	13.85	39.66	39.29	10.07	10.63	6.91	19.32	10.43	6.79	27.47	11.57	21.02	66.82	19.28	35.51	24.74	15.08	5.98	8.47	9.53	1.41	21.63	23.64	16.35	4.39	14.66	8.54
23	E2_Db	KnownBoundary	0	30.55	0.00	15.42	20.28	6.04	3.11	10.81	4.53	16.87	5.83	12.24	30.33	5.22	21.65	86.90	31.90	31.15	32.24	0.00	7.53	13.52	4.08	9.46	15.37	15.00	16.61	4.08	24.58	9.41
24	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	4.84	1.87	0.00	1.86	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	1.52
25	ER2c	ExonRegion	0	45.84	17.90	13.33	28.40	26.78	11.87	12.82	6.74	20.88	13.22	10.69	35.22	8.91	26.06	65.89	27.39	53.80	27.39	12.56	7.25	9.93	13.73	3.32	23.28	25.81	19.92	12.55	17.27	7.46
26	E2_Dc	NovelBoundary	0	22.65	4.46	11.24	18.55	27.41	13.08	5.38	1.94	13.76	10.79	5.31	15.48	1.50	14.11	18.34	3.14	72.16	13.87	0.00	0.00	3.77	2.33	0.00	14.30	11.44	3.60	0.00	6.11	1.42
27	E2c_E3a	KnownJunction	0	28.49	0.00	1.47	32.14	20.63	1.92	15.33	0.00	6.27	7.27	12.78	10.78	2.83	11.43	52.42	0.00	20.35	13.87	8.09	3.06	5.78	4.62	4.92	12.02	15.27	18.02	0.00	0.00	7.10
28	I2	Intron	0	20.55	11.70	5.59	16.67	11.35	5.99	8.19	11.24	12.95	6.49	3.28	16.40	4.90	13.22	32.04	18.24	31.02	16.14	5.11	3.38	7.88	6.29	1.84	12.19	12.26	10.50	2.93	8.05	7.48
29	I2_SR1	SilentIntronRegion	0	22.56	13.57	6.24	13.41	13.20	6.52	7.44	12.06	15.45	6.64	2.70	17.27	4.83	13.62	33.47	19.35	35.73	17.77	5.44	3.69	8.00	7.54	1.90	13.61	12.80	9.44	3.63	8.20	6.79
30	I2_AR1	ActiveIntronRegion	0	12.38	3.97	2.93	30.67	3.72	3.86	11.46	7.91	2.58	5.97	5.81	12.98	5.23	11.70	26.50	13.79	11.57	9.49	3.78	2.10	7.45	1.10	1.59	6.36	10.15	15.15	0.00	7.54	10.54
31	E3_Aa	NovelBoundary	0	38.16	11.63	13.70	8.41	33.01	16.84	5.44	10.75	32.25	10.27	4.30	35.27	3.22	23.02	57.80	13.23	44.28	4.88	16.18	0.00	5.78	6.76	0.00	20.40	19.17	3.52	0.00	1.80	1.68
32	ER3a	ExonRegion	0	1154.28	377.95	319.31	213.97	431.10	434.85	751.16	783.93	1000.80	463.30	294.13	503.47	944.94	363.19	1643.94	1374.60	415.66	704.94	471.12	728.45	381.60	1668.49	440.75	704.96	855.41	932.54	198.56	327.97	1565.23
33	E3_Da	KnownBoundary	0	800.96	259.05	371.68	200.16	266.15	183.78	770.74	445.40	424.08	480.90	376.58	554.30	725.13	357.23	1783.31	527.46	534.21	480.07	396.08	446.49	139.02	884.74	704.07	465.72	450.45	833.14	270.95	430.04	1027.84
34	ER3b	ExonRegion	0	1281.02	309.97	490.96	504.88	1053.19	323.49	872.61	749.06	849.93	392.25	240.62	444.24	577.63	418.17	1816.04	497.20	445.55	646.20	395.81	743.93	335.62	1543.88	430.72	663.34	810.12	759.33	212.03	333.16	669.03
35	E3_Db	KnownBoundary	0	1110.70	290.46	223.04	368.40	294.45	205.34	216.10	477.60	708.08	209.99	137.61	269.78	273.67	278.95	1199.70	294.37	295.79	451.56	282.79	473.70	235.45	1213.49	142.38	468.89	488.38	273.71	47.46	93.05	390.02
36	ER3c	ExonRegion	0	890.14	142.24	317.88	633.43	732.65	200.71	650.35	428.41	676.40	260.51	140.75	272.34	354.54	232.07	1213.32	297.25	260.49	440.25	213.36	416.27	258.58	1141.95	331.83	399.86	526.74	523.04	103.58	203.18	366.71
37	E3_Dc	KnownBoundary	0	729.77	145.43	354.02	379.83	518.45	200.36	573.69	351.50	628.02	226.85	146.06	269.66	235.78	128.11	1060.18	162.02	190.86	193.93	129.48	274.15	225.02	1007.93	273.24	412.31	546.53	530.20	108.04	240.16	299.56
38	ER3d	ExonRegion	0	344.59	80.83	168.90	151.83	201.10	81.47	249.00	147.48	270.03	96.81	53.34	139.83	111.99	57.79	459.10	69.93	79.93	184.22	153.16	138.98	101.12	484.84	121.34	176.39	232.72	263.58	39.72	100.03	154.17
39	IG15_SR1	SilentIntergenicRegion	0	2.08	0.00	0.00	0.00	0.00	0.10	0.40	0.00	0.85	1.01	0.19	1.48	0.00	0.36	0.00	1.32	2.38	0.77	1.45	0.00	0.00	0.72	0.00	1.15	0.00	0.00	0.98	0.94	1.79
40	IG15_AR1	ActiveIntergenicRegion	0	1.91	0.00	0.20	0.00	0.59	0.95	0.30	0.00	1.17	1.11	0.35	1.11	0.23	0.60	0.00	1.79	2.88	1.28	0.12	0.00	0.17	0.76	0.44	1.82	1.21	1.14	0.00	3.31	0.97