Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HSPA5	Gene	0	645.11	1606.89	1398.80	1585.03	1586.51	821.11	408.45	898.39	1231.79	1092.26	1454.86	1499.24	972.49	1701.16	468.80	612.60	520.53	1236.88	773.25	428.11	1277.06	1212.45	1774.27	1322.67	1262.64	743.77	1598.22	919.58	1439.11
2	324460	Transcript	0	1026.62	2129.46	2414.39	2473.49	2409.44	1255.66	522.59	1357.65	1712.46	1626.52	2098.95	2403.15	1448.58	2759.53	470.63	915.98	809.75	2059.83	1080.64	568.46	1948.92	1874.48	2853.30	1824.97	1946.16	1263.31	2089.05	1531.21	2180.95
3	ER1a	ExonRegion	1	437.68	354.67	585.72	492.26	678.36	395.25	145.53	403.02	286.14	527.88	420.79	803.79	389.22	891.00	126.19	429.28	304.96	906.81	214.44	189.44	680.64	1050.31	1378.80	314.34	428.32	516.93	326.41	613.67	574.01
4	E1_Da	NovelBoundary	0	0.00	0.00	1.47	0.00	7.22	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	3.72	0.00	0.00	0.00	0.00	0.00	0.00	4.05	0.00	2.51	0.00	1.48	1.89	0.00	6.02	0.00
5	E1a_E2a	KnownJunction	1	511.82	460.71	1560.07	806.26	2236.51	356.09	158.77	430.97	262.71	505.79	713.20	1308.26	503.14	1387.29	187.56	328.56	543.51	1130.19	283.24	239.66	492.31	912.98	1104.33	467.16	486.37	520.55	579.62	906.90	607.15
6	I1	Intron	0	1.13	0.00	0.88	0.00	0.00	0.72	0.00	1.94	1.81	0.00	1.88	1.62	0.00	4.05	2.89	0.00	0.00	1.01	0.00	5.39	0.00	1.90	0.00	1.13	3.76	0.00	1.93	0.86	0.00
7	I1_SR1	SilentIntronRegion	0	1.15	0.00	0.90	0.00	0.00	0.74	0.00	1.98	1.84	0.00	1.92	1.65	0.00	4.13	2.95	0.00	0.00	1.03	0.00	5.50	0.00	1.94	0.00	1.15	3.84	0.00	1.97	0.88	0.00
8	E2_Aa	NovelBoundary	0	11.74	0.00	3.89	8.20	0.00	6.83	0.00	4.43	1.25	3.83	3.10	5.60	0.00	15.16	0.00	3.21	1.01	0.00	0.00	4.05	0.00	9.24	0.00	0.00	5.42	9.70	0.00	6.20	2.97
9	ER2a	ExonRegion	0	819.62	1027.69	2286.92	2084.61	2151.47	939.41	332.01	827.09	613.50	1087.37	1443.79	2016.43	935.04	2255.42	226.03	637.62	628.05	1656.23	616.25	393.03	1396.29	1351.88	2079.96	946.30	1224.38	946.23	1162.71	1095.18	1256.32
10	E2_Da	NovelBoundary	1	5.54	0.00	0.00	18.55	0.00	6.91	0.00	4.58	2.38	5.15	0.00	10.87	3.73	18.01	9.97	9.33	2.86	18.49	8.09	0.00	0.00	6.61	9.95	2.63	5.00	1.67	0.00	17.93	0.00
11	E2a_E3a	KnownJunction	0	1286.06	2162.48	1828.16	1510.71	1485.50	1984.87	527.01	1253.60	1319.26	1870.09	2494.92	2767.18	1429.56	3078.99	368.14	1052.62	886.82	2515.69	1269.84	637.28	2644.88	1849.69	3212.41	1922.65	2280.39	1533.71	1722.81	1768.91	2083.42
12	E2a_E4a	NovelJunction	0	0.00	0.00	1.54	0.00	6.04	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	2.26	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.37
13	I2	Intron	0	9.56	3.14	2.10	6.99	2.72	12.45	3.65	1.80	3.51	5.03	2.49	5.24	0.00	14.12	2.82	9.33	2.29	9.13	10.24	3.07	4.57	1.00	1.26	5.40	8.17	1.32	1.53	5.00	3.72
14	I2_SR1	SilentIntronRegion	0	7.14	2.41	1.64	7.31	5.07	6.92	3.98	2.36	2.64	3.71	2.25	2.88	0.00	10.09	2.06	12.40	1.87	5.93	10.17	3.56	4.33	2.10	1.41	3.18	11.71	2.22	2.32	5.29	4.93
15	I2_AR1	ActiveIntronRegion	0	10.75	3.51	2.33	6.97	1.75	15.03	3.57	1.58	3.94	5.68	2.63	6.34	0.00	16.07	3.19	8.16	2.50	10.64	10.43	2.91	4.75	0.53	1.22	6.44	6.76	0.95	1.22	4.94	3.26
16	E3_Aa	NovelBoundary	0	3.01	8.34	1.12	8.41	0.00	7.17	0.00	0.00	2.74	3.36	6.20	5.72	0.00	16.13	17.54	13.77	0.00	9.25	16.18	4.13	12.11	7.24	0.00	17.47	13.71	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	1033.87	2155.97	2302.61	1941.83	2104.81	1546.37	484.73	1186.94	1270.54	1750.22	2387.24	2643.46	1356.33	3107.83	348.94	1017.48	793.36	2307.24	1192.75	559.26	2270.49	1826.48	3246.35	1721.92	2032.26	1261.96	1959.40	1464.24	2019.07
18	E3_Da	NovelBoundary	0	11.15	12.22	0.00	0.00	14.74	3.72	0.00	0.00	7.73	1.96	5.19	6.78	0.00	35.38	0.00	10.63	2.43	4.62	0.00	2.98	5.37	2.33	0.00	19.68	4.36	0.00	0.00	0.00	0.00
19	E3a_E4a	KnownJunction	0	1331.24	2000.67	3212.35	2367.22	2692.33	1714.61	637.14	1332.98	1400.78	1948.54	2534.53	2751.55	1573.21	3346.00	435.71	888.23	905.48	2433.75	1003.24	607.67	2598.99	1874.63	3547.50	2001.73	2158.36	1418.78	2358.99	1868.75	2307.68
20	I3	Intron	0	8.43	8.50	3.29	8.68	2.96	5.41	2.14	1.39	6.27	6.55	2.88	7.29	0.00	20.86	5.02	6.01	3.39	9.91	13.05	3.10	5.18	5.46	1.37	5.21	13.19	1.66	0.55	5.67	1.62
21	I3_AR1	ActiveIntronRegion	0	4.31	10.27	7.35	12.24	4.69	3.93	3.61	0.00	7.84	5.25	4.87	5.12	0.00	15.12	5.34	2.38	3.93	11.46	20.26	1.54	6.68	4.28	0.44	3.20	12.33	0.62	1.00	1.54	0.66
22	I3_SR1	SilentIntronRegion	0	9.97	7.99	1.92	7.55	2.39	5.98	1.65	1.89	5.80	7.08	2.23	8.13	0.00	23.09	4.97	7.34	3.24	9.50	10.71	3.68	4.72	5.92	1.70	5.96	13.65	2.05	0.41	7.18	1.97
23	E4_Aa	NovelBoundary	0	10.97	30.83	11.09	10.78	7.37	23.56	5.15	9.36	9.87	8.67	9.11	12.83	1.82	41.17	8.37	12.85	5.42	9.25	24.28	0.00	9.79	9.43	2.12	14.12	21.78	4.29	17.74	2.29	3.37
24	ER4a	ExonRegion	0	1162.45	2357.26	2956.40	2392.66	2336.30	1482.30	502.15	1450.14	1430.79	1962.28	2478.21	2705.54	1474.27	3502.18	337.13	1017.98	855.73	2419.81	1216.65	641.55	2277.27	2093.11	3472.61	2018.84	2346.69	1544.38	2241.25	1875.18	2499.36
25	E4_Da	NovelBoundary	0	5.43	4.85	4.11	10.14	0.00	6.29	2.80	8.66	0.00	1.88	2.85	9.10	3.28	20.49	7.77	13.08	2.99	13.87	0.00	11.16	0.00	6.90	11.08	2.33	18.53	3.30	0.00	7.73	1.68
26	E4a_E5a	KnownJunction	1	864.14	2419.30	2945.49	2554.87	1720.56	1219.97	389.12	1066.23	1255.07	1800.23	1740.50	2265.74	1432.65	2742.52	303.76	1013.00	783.93	2320.73	1270.29	535.48	1844.72	1776.72	3152.62	1640.32	1569.36	1316.86	1154.42	1510.24	2420.62
27	I4	Intron	0	6.14	10.33	0.96	16.43	8.40	3.94	0.00	7.39	2.25	1.65	8.87	4.95	2.98	16.61	2.64	2.45	0.86	11.04	3.66	6.32	0.82	3.10	2.07	6.16	17.20	1.80	1.05	11.21	0.00
28	I4_SR1	SilentIntronRegion	0	7.20	13.82	1.12	13.94	9.49	5.19	0.00	8.51	2.48	1.83	10.24	5.88	2.75	17.17	1.16	1.00	0.83	11.64	0.94	7.37	1.24	4.25	3.34	7.55	21.12	2.37	1.07	12.15	0.00
29	I4_AR1	ActiveIntronRegion	1	7.66	8.45	1.12	29.25	12.81	4.91	0.00	12.89	3.37	2.27	13.43	5.65	5.20	25.53	5.60	5.06	1.00	13.65	9.05	9.64	1.02	2.83	1.03	8.30	25.52	3.14	1.83	16.77	0.00
30	E5_Aa	NovelBoundary	0	12.68	17.16	17.96	48.32	30.36	10.70	7.90	7.02	5.73	17.10	7.97	10.27	3.98	34.59	8.37	27.08	5.27	13.87	32.37	14.97	3.49	2.14	4.48	15.79	17.05	7.51	17.74	8.22	4.09
31	I4_SR2	SilentIntronRegion	0	5.65	6.57	1.12	27.92	7.25	3.62	0.00	10.04	3.17	1.44	8.87	4.95	4.84	22.35	5.60	5.06	1.00	11.16	9.05	7.67	0.00	1.80	0.00	6.06	14.68	1.14	1.83	14.82	0.00
32	I4_AR2	ActiveIntronRegion	0	3.08	3.49	0.28	13.25	4.67	0.09	0.00	0.35	0.63	1.17	3.42	2.16	1.87	9.01	4.55	4.59	0.88	9.04	7.07	1.23	0.00	0.68	0.00	1.48	4.47	0.00	0.23	4.48	0.00
33	ER5a	ExonRegion	0	1154.99	2360.16	3143.66	2778.62	2936.57	1458.64	565.96	1808.39	1829.68	1994.72	2537.78	2730.04	1623.96	3220.25	431.36	1053.92	882.93	2234.07	1195.32	670.44	2340.65	2237.91	3519.17	2085.80	2401.17	1683.88	2559.49	1798.81	2560.86
34	E5_Da	NovelBoundary	0	5.07	3.88	1.22	10.78	0.00	9.63	0.00	6.82	4.51	2.04	1.55	1.45	1.59	17.37	9.97	3.82	0.00	9.89	0.00	0.00	5.74	2.14	6.50	0.00	4.70	0.00	0.00	5.66	0.00
35	E5a_E6a	KnownJunction	0	1162.19	2154.92	3186.04	2683.86	2627.49	1165.91	603.96	1801.23	1744.72	1738.91	1953.25	2430.05	1738.48	3070.59	365.95	1151.54	830.05	2249.97	1164.87	680.28	2109.85	2089.77	3246.15	2086.84	2117.44	1300.60	2514.89	1388.74	2360.70
36	I5	Intron	0	1.93	0.00	0.00	9.71	2.20	4.96	1.82	3.32	1.52	1.30	3.76	4.18	0.00	5.51	0.00	0.00	1.35	3.62	2.88	4.97	1.29	0.81	0.82	0.97	6.45	2.84	2.48	5.15	1.21
37	I5_AR1	ActiveIntronRegion	0	1.97	0.00	0.00	9.88	2.24	5.05	1.85	3.38	1.55	1.33	3.83	4.26	0.00	5.60	0.00	0.00	1.37	3.69	2.94	5.06	1.31	0.81	0.83	0.99	6.57	2.89	2.52	5.23	1.23
38	E6_Aa	NovelBoundary	0	5.78	0.00	10.81	28.90	0.00	12.66	5.03	6.72	6.12	0.00	1.30	4.73	1.18	14.89	15.55	0.00	2.27	0.00	16.18	0.00	0.00	4.33	0.00	12.08	20.42	5.24	0.00	11.32	1.95
39	ER6a	ExonRegion	0	1285.65	2710.01	3220.62	3291.49	3160.58	1373.63	635.02	2170.16	2222.74	1949.69	2760.46	2979.38	1996.77	3395.35	541.57	1173.73	979.94	2316.90	1280.11	705.87	2337.28	2488.20	3628.85	2356.90	2565.93	1599.70	3029.95	1848.14	2839.46
40	E6_Da	NovelBoundary	0	14.81	13.86	8.65	0.00	0.00	12.70	8.75	6.52	3.99	8.63	10.66	10.06	0.00	31.73	0.00	0.00	4.01	4.62	16.18	3.23	1.76	11.43	0.00	14.06	31.94	8.58	7.60	7.82	5.22
41	E6a_E7a	KnownJunction	0	1202.71	3204.11	3220.30	4216.57	3829.30	1276.72	780.75	2163.22	3580.09	1841.17	2277.69	2921.54	1984.38	3315.43	927.23	1106.86	1007.00	2596.86	1609.95	720.31	2125.89	2564.47	3055.60	2554.18	2601.16	1492.55	2791.26	1830.60	3088.25
42	I6	Intron	0	7.78	9.61	5.46	11.71	5.32	11.73	2.20	6.01	5.39	3.93	4.75	9.07	0.24	23.81	5.82	4.12	4.88	6.70	10.44	9.22	4.14	4.58	2.30	5.47	21.53	2.85	2.66	8.28	2.06
43	I6_AR1	ActiveIntronRegion	0	7.83	9.68	5.50	11.79	5.36	11.81	2.21	6.06	5.43	3.96	4.79	9.14	0.24	23.98	5.86	4.15	4.91	6.75	10.51	9.29	4.17	4.61	2.31	5.51	21.67	2.87	2.68	8.34	2.07
44	E7_Aa	NovelBoundary	1	14.81	18.52	6.15	27.61	48.63	18.19	5.84	9.51	11.85	8.95	3.99	23.01	1.75	37.69	17.74	3.44	3.53	4.62	0.00	12.32	5.41	4.57	0.00	12.02	35.69	5.45	7.60	33.92	7.96
45	ER7a	ExonRegion	0	1263.60	3114.62	2654.88	3589.86	3199.96	1371.03	762.93	1948.60	2933.72	2111.45	3205.67	3334.92	2155.21	3385.16	762.05	1153.44	1167.38	2324.68	1509.74	735.46	2280.67	2444.80	3429.74	2692.31	2807.64	1601.45	3681.07	2109.25	3266.00
46	E7_Da	NovelBoundary	0	2.48	16.38	1.54	9.49	29.47	10.59	2.69	2.54	6.49	1.96	0.00	8.98	0.00	19.81	8.77	9.87	0.92	23.12	0.00	3.89	4.09	1.94	0.00	8.67	13.26	3.78	0.00	9.97	5.32
47	E7a_E8a	KnownJunction	0	1473.10	4038.47	2395.24	5288.56	3901.36	1962.12	945.59	1953.56	4449.48	2535.31	3486.64	3467.65	2428.16	3663.70	1165.02	1295.97	1225.90	2725.80	1739.43	856.43	2956.46	2810.96	3706.43	3456.50	3328.55	1837.76	3947.77	2356.07	3806.72
48	I7	Intron	0	2.99	9.64	2.91	5.83	3.40	6.87	4.68	2.78	5.20	5.03	2.21	3.23	0.75	11.35	5.56	1.94	3.64	5.52	7.42	8.28	3.98	1.88	0.84	4.00	12.62	0.91	1.28	7.01	3.03
49	I7_SR1	SilentIntronRegion	0	1.64	5.88	3.21	8.25	0.00	7.38	4.64	1.41	3.65	4.43	0.00	1.66	0.00	7.80	3.87	0.95	4.58	2.46	9.80	5.28	2.73	4.84	0.69	1.65	11.51	1.21	0.70	5.00	1.03
50	I7_AR2	ActiveIntronRegion	0	3.96	12.50	3.09	5.30	5.41	7.37	5.21	3.74	6.52	5.87	3.52	4.34	1.20	14.29	6.98	2.62	3.59	7.59	7.08	10.63	5.01	0.67	1.00	5.56	14.53	0.87	1.69	8.73	4.32
51	E8_Aa	NovelBoundary	0	7.96	12.02	4.61	51.98	31.54	8.21	5.44	4.28	4.42	5.39	5.16	8.52	0.00	19.01	25.91	3.52	2.59	0.00	8.09	8.10	3.81	6.42	2.51	15.37	20.69	0.00	0.00	6.38	2.67
52	ER8a	ExonRegion	0	410.24	1420.82	717.41	1102.93	1080.50	588.01	368.16	568.65	1087.72	774.21	1049.59	921.74	708.35	1031.23	532.88	419.43	351.15	758.71	643.45	354.79	877.35	745.31	1018.92	1108.78	844.41	374.35	1305.69	533.49	1024.59