Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF189	Gene	0	49.02	80.16	40.63	86.56	96.79	85.37	45.78	47.66	45.16	82.38	80.99	51.31	36.17	70.09	115.98	87.13	83.68	59.20	67.84	54.75	101.06	35.42	51.01	90.40	68.28	41.02	84.66	48.04	63.57
2	374861	Transcript	0	9.54	3.93	7.85	8.77	24.87	17.77	5.81	18.74	4.77	15.55	5.61	6.21	6.15	6.96	8.82	19.98	15.14	16.33	18.98	6.02	14.75	14.07	10.27	5.66	9.62	8.72	9.36	11.73	7.19
3	259395	Transcript	1	15.11	18.47	10.80	11.76	23.21	8.52	5.61	11.92	0.17	11.69	15.43	6.67	8.71	18.98	5.96	25.12	16.39	23.30	10.14	29.36	17.05	6.75	12.46	10.04	15.72	9.00	5.66	20.00	12.06
4	339664	Transcript	0	4.00	4.09	2.66	8.93	11.33	7.75	6.49	8.00	2.53	6.62	3.02	3.19	2.74	7.13	6.48	0.94	4.77	9.89	10.40	12.32	3.63	1.47	2.50	1.88	1.50	5.68	4.63	2.92	2.58
5	IG29_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.71	4.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	10.65	4.17	10.45	17.53	35.16	14.24	6.41	12.11	2.28	9.25	3.48	6.73	7.11	7.56	8.87	21.59	10.66	14.17	5.60	4.94	14.09	12.48	9.35	2.65	4.65	13.79	3.97	14.65	7.37
7	E1_Ab	KnownBoundary	0	2.42	0.00	35.15	19.63	35.81	14.77	10.01	6.87	5.39	14.42	3.16	13.34	8.57	14.03	0.00	14.15	31.47	0.00	8.09	15.71	16.12	19.01	12.71	12.02	10.53	3.30	2.34	14.20	11.75
8	ER1b	ExonRegion	0	24.42	19.65	13.41	8.54	19.71	24.24	12.91	22.50	4.02	25.38	9.82	11.85	9.71	21.04	16.52	35.12	18.81	31.56	15.35	27.74	28.41	26.76	16.73	10.39	14.20	18.64	3.22	16.17	10.47
9	E1_Da	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	1.65	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00
10	E1a_E2a	KnownJunction	0	13.68	8.63	8.42	0.00	20.48	13.04	7.61	20.16	0.00	11.58	19.83	5.63	14.94	25.28	8.37	49.88	14.68	42.38	8.09	39.61	23.95	9.04	7.34	11.07	24.09	12.36	10.44	22.47	14.26
11	E1a_E3a	KnownJunction	0	2.77	3.59	2.87	0.00	7.37	7.25	8.01	7.22	3.05	5.35	0.00	3.73	1.24	3.68	9.97	0.00	2.59	9.25	15.96	8.10	3.61	0.00	0.00	0.00	0.00	6.18	3.93	0.00	1.39
12	E1a_E3b	KnownJunction	0	8.43	3.68	5.26	0.00	14.59	21.29	5.21	25.38	7.25	21.85	7.75	5.69	5.19	6.36	8.77	18.36	19.63	18.49	32.37	7.11	15.40	15.65	11.18	8.67	14.59	3.65	14.76	8.81	7.00
13	ER2a	ExonRegion	1	15.49	14.98	10.43	18.23	15.53	7.48	6.18	10.83	0.50	19.42	20.28	10.19	8.16	17.49	9.51	12.47	15.39	18.28	14.24	25.15	18.23	8.81	18.52	10.44	19.65	11.00	6.55	20.16	10.72
14	E2_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	0.00	3.22	0.00	2.54	0.00	7.55	0.00	2.98	3.95	2.26	8.37	0.00	2.30	0.00	8.09	0.00	3.21	2.29	0.00	0.00	0.00	0.00	0.00	2.29	1.82
15	E2a_E3a	NovelJunction	0	5.25	0.00	3.24	0.00	6.78	1.53	0.00	5.03	1.22	1.52	1.52	2.95	0.00	6.51	9.17	2.98	2.72	13.87	16.18	7.86	3.45	6.47	2.02	0.00	1.63	5.71	0.00	0.00	1.32
16	E2a_E3b	KnownJunction	0	16.16	31.80	13.55	17.04	33.60	5.03	3.03	4.78	0.00	4.07	6.17	4.19	3.03	14.16	0.00	13.00	19.09	9.25	8.09	23.32	8.98	2.38	11.52	8.61	3.41	3.65	0.00	17.39	11.19
17	ER3a	ExonRegion	0	5.23	4.58	2.45	17.86	15.29	8.25	4.97	8.78	2.01	7.89	6.03	2.65	4.23	10.59	3.00	1.88	6.94	10.54	4.84	16.54	3.65	2.93	5.00	3.75	2.99	5.19	5.32	5.84	3.78
18	E3_Ab	KnownBoundary	0	5.66	9.31	1.40	37.75	34.19	11.05	2.92	3.68	0.00	11.42	12.69	0.00	4.94	14.27	0.00	6.50	6.89	13.87	0.00	24.15	4.09	6.81	6.75	2.63	7.20	4.38	4.57	7.23	4.72
19	ER3b	ExonRegion	1	52.54	54.20	21.12	48.93	59.96	51.34	15.84	30.90	8.63	50.82	58.05	28.30	17.71	44.92	26.34	49.59	50.65	44.61	37.98	51.06	53.39	28.84	27.86	48.81	53.19	15.59	45.05	40.09	26.76
20	E3_Da	NovelBoundary	0	2.65	0.00	0.00	0.00	6.93	10.40	2.92	0.00	1.37	7.35	4.43	1.20	0.00	4.52	0.00	2.75	9.61	4.62	8.09	0.00	7.18	2.48	1.82	2.63	3.64	1.76	0.00	0.00	0.00
21	E3a_E4a	KnownJunction	1	28.14	52.84	22.32	39.26	94.91	54.71	21.11	20.80	15.38	89.16	53.56	28.89	29.65	42.81	41.86	58.83	49.59	47.01	56.65	42.76	47.57	34.91	35.46	31.46	56.64	13.86	72.11	40.75	28.72
22	I3	Intron	0	4.47	7.29	0.86	2.43	5.03	7.37	1.67	1.11	2.80	5.91	2.77	2.39	0.52	3.92	7.15	7.89	11.78	6.67	5.98	4.29	6.07	0.27	0.73	2.78	2.59	0.97	1.17	2.93	1.01
23	I3_AR1	ActiveIntronRegion	0	10.99	4.59	2.38	2.04	1.39	14.49	1.72	1.57	3.19	6.59	4.41	1.06	0.55	6.19	0.00	13.74	10.63	5.49	5.46	1.57	6.50	2.57	1.03	3.06	2.04	3.58	0.00	3.72	0.00
24	I3_SR1	SilentIntronRegion	0	4.79	7.28	0.66	1.87	4.77	7.71	1.29	1.35	2.43	5.14	2.88	2.22	0.55	3.78	4.37	5.19	11.40	7.40	6.33	3.85	5.28	0.29	0.65	2.67	2.40	0.67	0.54	2.85	1.21
25	I3_AR2	ActiveIntronRegion	0	4.59	4.63	1.09	1.87	3.81	6.42	2.73	0.59	0.60	5.95	1.35	1.39	0.00	1.37	2.03	6.75	7.53	4.43	4.24	6.35	5.28	0.00	0.00	0.81	0.82	0.61	1.19	1.11	0.22
26	I3_AR3	ActiveIntronRegion	0	3.42	12.48	0.63	1.34	5.96	7.86	1.13	1.38	4.25	7.04	1.67	3.18	1.28	4.54	11.28	7.15	17.21	7.47	3.89	6.98	5.62	0.00	0.00	4.84	3.08	0.74	2.75	5.04	1.32
27	I3_AR4	ActiveIntronRegion	0	3.65	6.37	0.93	3.71	5.78	6.16	2.01	0.82	3.24	6.25	3.26	2.71	0.34	4.28	11.05	10.81	11.44	6.33	6.98	3.51	7.34	0.13	1.27	2.63	3.17	1.16	1.42	2.59	1.01
28	E4_Aa	NovelBoundary	0	0.00	20.46	1.45	10.14	0.00	12.39	0.00	0.00	2.71	0.00	1.61	0.00	1.97	2.28	9.97	21.04	18.64	14.38	8.09	3.64	12.31	0.00	0.00	4.85	3.52	0.00	0.00	0.00	3.43
29	ER4a	ExonRegion	0	54.91	93.30	46.67	100.74	111.32	99.17	53.50	54.13	54.05	95.19	94.52	59.70	41.85	80.88	137.79	100.15	97.29	66.65	79.06	61.37	117.43	39.28	58.46	106.74	79.01	46.73	100.42	54.12	74.61
30	IG30_SR1	SilentIntergenicRegion	0	1.19	4.30	0.00	0.00	2.38	5.84	1.58	1.42	1.61	5.53	1.90	3.23	3.00	0.81	4.31	10.20	1.34	3.65	16.36	0.00	7.31	1.91	0.00	2.95	0.00	1.18	1.41	3.59	1.34
31	IG30_SR2	SilentIntergenicRegion	0	1.15	5.91	0.20	4.67	4.42	4.25	1.31	1.29	3.58	4.40	4.63	5.08	1.60	3.94	3.59	3.21	5.09	4.00	2.25	0.96	9.61	1.54	1.62	3.73	1.28	0.74	7.25	3.10	2.49
32	IG30_AR1	ActiveIntergenicRegion	0	0.00	4.58	0.00	0.00	0.00	3.44	1.56	0.45	4.49	3.85	6.46	0.77	1.10	1.09	10.44	0.23	2.69	1.74	0.00	1.49	1.75	0.00	1.18	10.82	3.47	1.93	2.66	4.62	2.40
33	IG30_AR2	ActiveIntergenicRegion	0	0.00	7.12	1.03	0.00	2.00	2.71	2.06	1.01	3.79	4.59	3.88	3.56	1.41	1.28	10.17	3.99	4.47	1.90	4.58	1.29	3.33	0.74	3.33	8.45	3.40	4.94	3.76	3.40	1.54