Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	KLF4	Gene	0	15.49	24.16	7.34	10.58	2.04	12.06	9.21	1.44	10.90	22.48	4.94	13.58	5.68	16.08	4.96	12.33	17.34	30.42	17.53	5.47	24.55	8.89	34.17	122.80	21.76	7.59	15.56	4.81	9.80
2	420475	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	439281	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	316479	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	374670	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	374672	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	493306	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	411706	Transcript	0	1.43	0.12	0.10	0.00	0.00	0.10	0.25	0.02	0.04	0.21	0.00	0.41	0.05	1.39	0.00	0.62	0.16	0.67	0.17	0.24	0.60	0.11	1.79	2.31	1.11	1.11	0.09	1.11	0.10
9	497048	Transcript	0	6.80	1.87	2.10	0.00	0.00	0.78	1.10	0.54	0.48	0.53	1.01	1.99	0.57	1.77	2.85	3.41	1.18	3.45	2.98	2.27	2.28	4.03	4.53	11.73	4.12	3.13	0.55	0.95	0.82
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E1a_E2d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.08	0.00	0.62	0.00	0.00	0.00	0.00
14	E2_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.31	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E2e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER2c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2d	ExonRegion	0	0.00	1.37	0.23	0.00	0.00	0.55	0.00	0.00	0.11	2.35	0.00	0.70	0.00	0.71	0.00	1.76	0.50	4.40	0.00	0.00	2.54	1.75	4.97	0.42	0.56	0.00	0.00	0.00	0.00
19	E2_Ad	KnownBoundary	0	0.00	4.85	1.12	0.00	0.00	1.88	0.00	0.00	0.00	1.84	0.00	1.27	0.00	0.00	0.00	0.00	1.40	9.76	0.00	0.00	2.05	4.18	6.70	2.63	1.93	0.00	0.00	0.00	0.00
20	ER2e	ExonRegion	0	1.50	3.11	1.56	3.89	0.00	1.42	1.09	0.00	0.82	4.65	0.60	1.67	0.51	3.55	2.50	2.37	2.21	10.39	1.25	2.33	3.75	2.26	4.04	21.31	3.28	1.67	1.99	0.00	0.89
21	E2_Ae	KnownBoundary	0	2.65	4.75	4.29	0.00	0.00	1.61	2.29	0.00	0.00	9.67	3.10	6.57	1.56	4.23	0.00	3.82	2.07	18.88	8.09	4.13	9.27	2.29	23.05	41.03	1.78	0.00	0.00	0.00	0.00
22	E2_Af	KnownBoundary	0	5.78	0.00	8.20	0.00	0.00	12.24	0.00	0.00	0.00	9.07	2.78	2.56	1.97	6.74	0.00	12.55	5.42	23.89	0.00	0.00	9.71	6.76	14.33	30.39	10.00	1.67	0.00	4.27	7.56
23	ER2f	ExonRegion	0	4.76	3.18	6.35	0.00	0.00	9.06	0.38	0.00	0.00	8.93	3.12	4.83	2.19	6.66	0.00	8.30	4.04	20.64	1.41	1.93	9.27	8.17	20.85	26.55	5.72	0.54	0.00	1.58	3.44
24	ER2g	ExonRegion	0	21.23	19.72	6.92	4.08	3.70	13.62	8.83	2.07	4.43	23.70	2.58	8.68	2.26	19.85	2.96	16.62	15.92	43.36	16.37	5.55	26.27	10.68	50.85	140.58	26.11	7.61	7.84	3.42	7.86
25	E2_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.97	0.00	0.00	0.00	1.56	1.90	0.00	2.27	5.38	0.00	0.00	0.00	0.00
26	E2b_E3b	KnownJunction	0	30.85	13.48	8.05	0.00	0.00	7.29	16.31	0.00	3.11	16.42	1.20	6.57	4.65	17.95	0.00	14.23	17.11	51.63	8.09	4.13	17.09	3.99	43.19	107.25	19.36	8.02	9.59	6.34	3.14
27	E3_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	2.92	0.00	1.83	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.10	0.00	0.00	0.00	0.00	0.00
28	ER3a	ExonRegion	0	1.43	0.12	0.10	0.00	0.00	0.10	0.25	0.02	0.04	0.21	0.00	0.41	0.05	1.39	0.00	0.62	0.16	0.67	0.17	0.24	0.60	0.11	1.79	2.31	1.11	1.11	0.09	1.11	0.10
29	E3_Ab	KnownBoundary	0	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	4.10	0.00	3.37	0.00	0.00	0.00	0.00	2.05	0.00	1.87	5.32	3.86	0.00	0.00	0.00	0.00
30	ER3b	ExonRegion	0	23.51	13.52	8.85	0.00	0.00	9.80	11.30	1.51	4.44	18.08	1.25	8.64	2.98	17.34	4.59	19.25	20.38	42.82	9.65	2.99	12.35	9.34	54.31	85.41	20.69	7.06	5.73	3.37	5.06
31	E3_Da	KnownBoundary	0	17.75	8.14	8.72	0.00	0.00	12.74	11.33	0.00	1.52	29.48	1.46	11.93	6.37	17.46	0.00	3.67	25.93	41.61	8.09	0.00	10.87	14.10	68.16	104.74	24.55	10.34	9.84	4.27	6.73
32	ER3c	ExonRegion	0	23.25	30.42	9.15	6.99	0.00	9.05	11.57	1.00	4.40	26.90	1.40	8.98	3.93	21.12	0.00	7.98	27.61	55.30	9.64	2.81	9.40	9.05	70.64	109.61	28.49	6.01	8.84	3.51	8.29
33	E3_Db	NovelBoundary	0	12.03	16.38	6.58	7.98	0.00	4.45	11.73	1.74	7.64	13.18	0.00	6.08	0.00	12.01	0.00	9.33	9.63	19.01	8.09	0.00	3.37	7.73	27.97	60.53	15.34	3.78	1.84	3.77	6.44
34	E3_Dc	NovelBoundary	0	2.95	0.00	1.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	3.35	0.00	2.07	0.00
35	E3c_E4b	KnownJunction	0	26.66	9.02	6.60	0.00	0.00	1.46	15.33	7.07	7.31	22.37	1.52	7.14	4.52	15.29	0.00	8.80	31.29	47.65	16.18	3.64	13.80	15.75	75.40	112.87	26.22	3.99	6.71	1.89	14.53
36	ER3d	ExonRegion	0	23.41	15.92	7.77	3.38	0.00	3.70	14.11	3.68	8.38	21.55	1.19	6.95	5.20	17.02	0.00	8.76	25.58	44.93	16.71	3.03	12.95	8.18	67.46	117.82	23.64	6.04	7.61	4.01	11.56
37	I3	Intron	0	3.40	1.02	0.88	0.76	0.00	0.29	1.07	0.19	0.41	1.99	0.38	2.93	0.20	3.11	0.58	1.31	0.63	0.61	3.04	0.29	3.02	1.72	2.87	6.15	1.81	1.33	0.00	0.86	0.28
38	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.23	0.00	1.25	0.00	2.21	0.00	0.00	4.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	I3_SR1	SilentIntronRegion	0	3.74	1.13	0.98	0.74	0.00	0.32	1.07	0.22	0.40	2.13	0.42	3.21	0.23	3.40	0.64	1.12	0.70	0.68	3.21	0.32	3.34	1.90	3.10	6.40	1.80	1.47	0.00	0.88	0.23
40	E4_Aa	NovelBoundary	0	5.54	0.00	3.54	0.00	0.00	0.00	5.66	0.00	0.00	2.04	0.00	5.06	0.00	2.50	0.00	6.81	3.80	0.00	0.00	3.97	0.00	4.62	4.58	5.44	16.06	0.00	2.19	0.00	1.49
41	I3_AR2	ActiveIntronRegion	0	0.44	0.00	0.00	1.51	0.00	0.00	1.67	0.00	0.89	1.05	0.00	0.38	0.00	0.00	0.00	3.84	0.00	0.00	0.00	0.00	0.00	0.00	1.18	6.16	3.20	0.00	0.00	1.07	1.16
42	ER4a	ExonRegion	0	6.80	1.87	2.10	0.00	0.00	0.78	1.10	0.54	0.48	0.53	1.01	1.99	0.57	1.77	2.85	3.41	1.18	3.45	2.98	2.27	2.28	4.03	4.53	11.73	4.12	3.13	0.55	0.95	0.82
43	E4_Ab	KnownBoundary	0	0.00	0.00	3.39	0.00	0.00	0.00	2.17	0.00	1.46	0.00	0.00	7.83	0.00	2.10	0.00	11.32	1.40	0.00	0.00	3.14	3.61	6.47	6.99	18.30	8.68	0.00	1.84	0.00	0.00
44	ER4b	ExonRegion	0	21.42	7.86	10.17	5.41	3.37	6.07	6.72	1.40	2.85	15.63	1.67	11.70	3.48	17.08	2.19	8.83	19.64	34.84	9.24	5.56	12.24	13.08	48.67	98.32	21.44	10.82	5.33	5.29	8.09
45	E4_Da	KnownBoundary	0	17.64	9.31	15.75	0.00	0.00	15.69	12.93	4.78	1.13	25.57	0.00	9.55	4.97	19.03	0.00	21.19	23.41	32.36	0.00	6.70	13.20	8.95	38.12	78.48	10.61	6.27	0.00	8.31	5.94
46	ER4c	ExonRegion	0	21.71	14.16	13.40	11.09	1.28	14.98	12.30	4.02	6.90	25.21	2.75	15.17	5.41	19.77	5.15	12.99	23.57	41.59	15.45	7.05	24.14	13.85	43.23	93.70	21.38	13.20	6.36	7.31	7.30
47	E4_Db	KnownBoundary	0	2.18	0.00	2.42	0.00	0.00	1.96	0.00	1.99	2.80	0.00	0.00	2.68	0.00	3.83	8.37	0.00	0.00	0.00	8.09	0.00	3.61	0.00	2.22	7.78	3.75	0.00	0.00	0.00	1.58
48	E4b_E4c	KnownJunction	0	32.80	3.78	13.55	8.63	0.00	9.75	9.67	0.00	5.85	16.14	4.05	12.02	4.33	20.01	0.00	13.00	16.39	51.12	0.00	0.00	37.38	13.47	62.99	132.19	20.80	13.35	10.09	5.53	6.40
49	ER4d	ExonRegion	0	3.23	5.52	3.44	3.62	0.00	4.91	2.23	2.82	0.37	2.24	0.03	5.73	0.87	3.88	1.58	4.86	0.40	1.93	2.42	1.36	4.13	1.59	0.75	8.67	7.31	2.46	1.05	0.32	0.59
50	E4_Ac	KnownBoundary	0	0.00	4.27	5.21	0.00	0.00	4.87	0.00	0.00	0.00	5.71	0.00	1.87	1.37	1.86	0.00	0.00	1.15	4.62	0.00	0.00	4.05	2.43	0.00	16.57	12.16	0.00	0.00	3.41	0.00
51	ER4e	ExonRegion	0	25.26	23.37	14.63	12.93	0.00	13.03	11.32	1.35	11.82	35.80	6.43	27.21	10.37	28.57	7.27	15.80	29.50	52.47	21.11	5.04	26.29	11.27	54.99	166.23	34.51	17.58	24.78	16.43	13.24
52	E4_Dc	NovelBoundary	0	0.00	0.00	2.44	0.00	6.78	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.43	0.00	7.65	0.00	0.00	0.00	4.13	2.05	1.80	0.00	5.44	5.61	0.00	0.00	2.29	1.52
53	E4c_E5a	KnownJunction	0	27.43	60.11	7.77	0.00	0.00	10.55	8.01	2.44	36.85	59.36	10.12	29.01	8.92	30.60	0.00	25.40	31.02	60.11	56.65	7.44	65.74	16.38	83.53	231.90	49.52	9.48	39.86	3.59	19.31
54	I4	Intron	0	2.06	1.22	0.66	3.65	0.28	0.78	0.68	0.21	1.46	2.69	0.47	3.06	0.00	3.81	3.01	1.36	0.68	0.36	1.81	0.93	3.15	0.82	1.02	14.72	7.19	0.18	0.62	1.11	0.91
55	I4_AR1	ActiveIntronRegion	0	2.06	1.23	0.66	3.66	0.28	0.78	0.69	0.21	1.46	2.70	0.47	3.07	0.00	3.82	3.01	1.37	0.68	0.36	1.81	0.94	3.15	0.82	1.02	14.75	7.21	0.18	0.62	1.11	0.91
56	E5_Aa	NovelBoundary	0	0.00	4.07	1.37	0.00	0.00	3.26	0.00	0.00	1.77	2.04	0.00	9.46	0.00	3.30	0.00	0.00	2.43	0.00	0.00	0.00	1.85	1.94	0.00	17.11	13.18	0.00	0.00	4.18	1.95
57	ER5a	ExonRegion	0	19.73	61.05	8.70	25.22	3.71	25.12	17.61	1.46	29.54	44.22	12.87	25.99	12.66	25.69	10.95	22.84	28.27	43.02	39.90	9.82	55.09	11.40	44.04	254.33	38.30	8.95	40.99	6.85	21.23
58	ER5b	ExonRegion	0	3.22	0.00	0.00	0.00	0.00	0.00	2.02	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	0.00	4.30	0.00	0.00	0.00	0.00	1.34
59	IG41_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	3.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00