Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C9orf103	Gene	0	43.81	29.19	13.78	33.36	35.88	26.86	44.87	10.38	28.47	28.38	31.50	24.01	17.97	18.79	105.77	70.03	51.73	25.27	23.92	29.32	17.20	22.24	16.07	27.81	38.91	36.53	22.13	21.02	39.32
2	277124	Transcript	0	3.24	2.17	1.24	5.40	4.48	2.64	2.15	0.98	1.69	2.27	1.64	1.45	0.87	2.55	9.36	6.29	5.47	4.11	2.62	1.25	1.35	1.57	0.62	2.70	2.08	2.31	0.89	2.22	1.90
3	405990	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	376417	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	376419	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	454393	Transcript	0	4.33	0.00	1.82	2.04	0.03	0.01	1.72	0.00	0.32	0.82	1.49	0.70	0.74	0.95	6.85	6.43	8.01	7.81	1.95	1.76	2.44	1.03	2.58	2.45	0.78	3.74	0.00	1.27	5.92
7	ER1a	ExonRegion	0	2.42	2.66	0.00	14.23	19.52	1.86	7.82	1.62	1.31	2.59	1.15	2.49	1.33	1.96	10.08	11.04	1.22	5.09	4.65	1.02	0.73	4.39	2.20	2.21	2.35	5.53	3.20	3.63	1.65
8	E1_Ab	KnownBoundary	0	16.63	9.40	1.54	29.33	47.90	7.52	16.71	4.83	0.00	9.83	1.55	1.54	5.06	3.23	31.89	25.32	2.43	9.25	0.00	0.00	2.05	19.01	2.51	3.05	5.46	14.33	12.52	6.20	10.20
9	E1_Ac	KnownBoundary	0	41.17	43.72	12.01	226.91	150.91	28.35	96.12	0.00	26.04	25.21	21.80	59.82	14.36	13.03	109.03	131.58	31.60	0.00	0.00	29.52	19.13	21.88	36.79	11.48	20.69	86.39	38.52	66.59	30.57
10	ER1b	ExonRegion	0	32.15	22.99	0.00	171.85	154.93	19.93	86.27	3.68	15.62	20.21	11.31	30.43	10.91	7.80	106.97	114.64	7.51	43.39	45.26	17.43	13.69	27.04	31.10	8.60	20.73	52.65	18.32	39.12	12.08
11	ER1c	ExonRegion	0	39.71	20.44	10.13	189.11	128.27	22.68	104.26	3.99	19.88	19.41	12.60	42.57	13.28	6.53	134.10	124.92	13.16	47.31	29.29	30.21	14.38	21.73	30.54	8.72	22.71	74.04	22.49	40.84	28.60
12	E1_Da	NovelBoundary	0	23.71	4.46	32.86	100.94	62.49	11.74	56.13	6.07	10.87	7.19	11.74	40.12	15.99	14.00	83.32	60.66	97.56	29.28	0.00	18.94	5.33	11.28	6.65	2.75	17.09	66.47	29.22	14.24	53.68
13	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Db	NovelBoundary	0	4.78	0.00	4.09	21.57	0.00	0.00	2.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.57	3.62	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	3.99	0.00	4.54	1.91
15	E1b_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.91	0.00	0.00	0.00	0.00	0.00	0.00	3.30
16	E1b_E5a	NovelJunction	0	2.95	0.00	7.92	0.00	0.00	1.73	5.15	0.00	4.57	4.07	9.68	0.00	9.68	1.29	19.93	6.96	2.23	0.00	0.00	31.34	5.25	4.13	2.12	8.79	4.85	6.57	23.16	0.00	8.58
17	E1b_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER1d	ExonRegion	0	19.80	3.28	23.56	94.20	26.96	8.73	58.22	4.22	12.03	6.96	6.30	22.99	18.03	3.89	85.33	51.81	19.56	35.16	5.86	14.38	5.79	8.27	11.38	6.71	12.02	81.26	20.58	26.66	41.53
19	I1	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.49	0.00	0.00	0.38	4.55	0.00	0.62	0.00	1.32	0.00	0.00	0.75	0.00	1.78	0.00	1.30	0.00	0.00	1.11
20	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.50	0.00	0.00	0.38	4.58	0.00	0.63	0.00	1.35	0.00	0.00	0.76	0.00	1.81	0.00	1.32	0.00	0.00	1.13
21	E2_Aa	NovelBoundary	0	5.72	0.00	2.19	9.06	0.00	4.99	2.92	0.00	0.00	0.00	0.00	1.57	0.00	1.37	0.00	3.82	1.96	4.62	0.00	0.00	5.78	1.99	2.36	0.00	3.26	3.99	0.00	3.73	4.59
22	ER2a	ExonRegion	0	4.33	0.00	1.82	2.04	0.03	0.01	1.72	0.00	0.32	0.82	1.49	0.70	0.74	0.95	6.85	6.43	8.01	7.81	1.95	1.76	2.44	1.03	2.58	2.45	0.78	3.74	0.00	1.27	5.92
23	E2_Da	NovelBoundary	0	3.01	0.00	4.14	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	1.00	0.00	7.19	4.50	0.00	0.00	0.00	1.48	0.00	0.00	2.75	0.00	0.00	0.00	6.07	0.00
24	E2a_E3a	NovelJunction	0	5.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	0.00	0.00	0.00	0.00	0.00	2.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	I2	Intron	0	9.78	3.92	2.54	3.64	1.77	6.03	2.12	2.13	3.15	6.48	7.03	3.71	1.76	4.16	13.72	18.41	24.33	11.05	6.94	3.20	4.80	1.63	0.52	4.83	6.26	3.42	2.12	4.55	5.21
26	I2_SR1	SilentIntronRegion	0	10.63	3.17	2.39	4.49	1.50	5.37	2.10	2.14	2.41	6.27	5.57	3.07	1.16	2.99	11.52	16.97	20.74	11.57	7.47	3.06	5.01	1.00	0.37	3.56	5.26	2.37	2.47	4.64	3.30
27	I2_AR1	ActiveIntronRegion	0	7.74	5.75	2.91	1.57	2.43	7.63	2.15	2.13	4.94	7.01	10.59	5.27	3.22	7.02	19.10	21.97	33.14	9.81	5.68	3.53	4.32	3.17	0.90	7.92	8.72	5.96	1.29	4.33	9.87
28	E3_Aa	NovelBoundary	0	22.71	9.02	20.03	8.20	6.63	8.98	2.57	9.26	25.76	15.18	14.52	17.47	7.99	11.92	8.97	12.55	89.07	0.00	0.00	7.69	7.14	13.03	4.43	23.63	13.75	20.99	18.34	17.21	6.21
29	ER3a	ExonRegion	0	13.76	7.71	3.96	5.46	2.89	8.59	2.90	3.27	6.64	7.94	5.33	4.75	2.63	8.01	29.54	19.30	24.88	13.53	8.44	4.83	6.03	3.20	0.92	7.62	7.01	3.33	1.24	6.76	7.87
30	E3_Da	NovelBoundary	0	7.79	4.65	0.00	0.00	0.00	10.63	0.00	4.08	9.38	8.83	4.71	7.47	3.89	12.34	16.74	24.56	29.94	33.13	8.09	7.86	22.26	0.00	0.00	5.56	0.00	0.00	0.00	4.40	8.45
31	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	1.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I3	Intron	0	9.49	6.09	3.03	6.74	3.28	12.09	3.65	1.11	13.88	5.52	3.35	6.25	3.00	6.62	38.42	22.11	33.96	11.94	2.36	5.39	8.90	2.42	1.70	10.83	8.73	7.38	3.81	7.11	11.35
33	I3_AR1	ActiveIntronRegion	0	6.94	5.55	2.80	5.60	2.73	12.89	2.92	1.23	15.76	6.28	3.32	6.06	2.89	6.61	40.61	22.76	36.82	12.68	2.85	5.36	8.91	2.01	1.82	12.97	9.73	9.65	5.31	8.00	14.39
34	I3_SR2	SilentIntronRegion	0	5.64	4.61	1.15	9.67	1.03	8.88	5.17	0.00	8.88	1.96	3.93	3.81	1.97	4.09	34.89	18.76	24.28	11.83	0.00	5.27	10.80	2.05	0.98	9.02	5.50	2.96	2.72	2.75	2.85
35	I3_AR2	ActiveIntronRegion	0	16.53	7.85	4.30	7.99	5.38	11.73	4.61	1.31	11.96	5.37	3.20	7.67	3.67	7.68	35.38	22.18	31.96	10.45	2.27	5.53	8.15	3.45	1.75	7.06	7.94	4.39	1.07	7.01	8.37
36	E4_Aa	NovelBoundary	0	8.55	4.85	3.04	0.00	0.00	1.69	8.47	2.34	4.96	5.71	1.61	5.75	3.18	7.89	50.63	19.12	32.30	4.62	8.09	15.46	7.34	2.29	2.27	6.10	6.93	0.00	0.00	7.95	10.14
37	E4_Da	NovelBoundary	0	5.54	0.00	7.67	9.71	0.00	2.99	0.00	0.00	7.06	1.92	1.36	1.72	0.00	4.34	16.54	0.00	13.39	0.00	0.00	4.13	2.01	0.00	2.22	0.00	1.48	0.00	0.00	6.47	1.88
38	E4a_E5a	KnownJunction	0	33.44	17.35	27.88	79.37	51.14	14.08	45.89	9.31	25.21	16.58	22.62	8.37	13.12	18.01	28.30	49.04	47.88	27.74	0.00	24.07	8.78	8.61	7.09	19.02	18.79	58.92	6.96	26.82	74.15
39	ER4a	ExonRegion	0	21.85	3.92	30.51	76.19	25.23	6.70	42.07	6.89	15.80	9.97	11.71	12.69	19.11	10.83	50.04	40.00	28.66	27.03	10.66	7.89	6.35	6.57	10.44	12.63	12.59	78.53	11.52	36.97	61.83
40	I4	Intron	0	3.25	3.11	2.76	0.99	1.35	2.65	1.39	0.25	1.86	3.18	0.98	1.96	1.88	2.62	13.68	9.04	11.11	3.01	0.44	2.07	2.75	1.24	0.50	3.56	1.58	2.16	0.00	2.25	3.13
41	I4_AR1	ActiveIntronRegion	0	3.39	1.02	3.70	0.00	1.55	3.05	0.64	0.00	0.00	2.74	0.75	1.95	3.49	2.01	14.54	7.64	11.34	3.15	0.00	3.25	2.25	1.14	0.00	4.09	1.36	1.48	0.00	1.55	3.18
42	I4_SR1	SilentIntronRegion	0	3.17	4.76	2.06	1.77	1.20	2.37	1.99	0.45	3.32	3.56	1.17	1.98	0.64	3.12	13.15	10.22	11.03	2.93	0.79	1.17	3.16	1.33	0.89	3.18	1.76	2.71	0.00	2.81	3.13
43	E5_Aa	NovelBoundary	0	2.48	14.25	0.00	9.27	0.00	14.62	0.00	4.63	6.18	1.92	3.23	7.05	0.00	7.56	0.00	14.61	21.38	0.00	0.00	0.00	5.86	2.48	0.00	8.67	5.46	0.00	4.97	8.40	8.78
44	ER5a	ExonRegion	0	78.32	35.45	15.15	45.22	30.98	37.50	49.10	26.49	24.70	20.28	37.66	36.98	19.62	34.18	88.32	85.00	76.33	29.86	16.07	34.47	21.36	47.29	16.61	39.07	66.37	64.85	16.06	28.55	51.94
45	E5_Da	NovelBoundary	0	5.66	0.00	5.41	0.00	0.00	1.88	2.57	4.58	10.78	7.31	1.61	4.52	0.00	7.67	42.85	6.58	34.64	0.00	0.00	0.00	3.29	2.43	2.12	4.79	0.00	10.94	0.00	6.43	6.64
46	E5a_E6a	KnownJunction	0	97.68	44.11	12.13	28.47	40.09	81.19	58.53	29.26	56.89	22.49	58.71	57.41	23.47	45.04	198.32	157.74	96.27	46.75	48.55	84.93	51.34	60.77	34.38	39.42	95.85	93.04	7.01	22.74	69.82
47	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	I5	Intron	0	2.04	2.00	0.73	1.33	1.81	2.38	0.65	0.74	2.15	2.49	1.12	1.32	0.70	1.77	6.27	5.47	7.98	2.24	1.12	1.45	3.22	0.33	0.43	2.10	1.68	2.20	0.95	1.30	2.16
49	I5_SR1	SilentIntronRegion	0	3.54	1.40	1.50	3.53	2.54	3.02	0.99	1.44	3.24	3.43	0.90	2.05	1.03	2.63	9.68	8.42	13.13	4.32	1.11	2.04	3.47	0.42	0.52	2.80	2.90	3.78	1.33	1.98	4.51
50	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	1.52	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	0.00	0.00	5.91
51	I5_AR2	ActiveIntronRegion	0	4.01	2.37	1.56	3.35	0.76	1.89	0.63	0.29	5.33	2.03	2.60	3.36	1.21	2.26	16.89	7.99	12.09	3.96	0.50	1.72	4.23	0.84	0.28	2.68	2.21	2.94	2.57	1.27	5.53
52	I5_SR2	SilentIntronRegion	0	1.57	1.84	0.36	0.19	2.26	1.94	0.87	0.60	2.22	2.35	1.07	0.45	0.77	1.70	6.57	5.22	8.83	1.87	0.95	1.33	2.94	0.39	0.74	2.28	1.51	2.35	0.55	1.28	1.98
53	I5_AR3	ActiveIntronRegion	0	0.00	3.46	0.00	0.00	0.00	2.08	1.36	0.67	0.75	3.47	1.98	0.93	0.00	0.33	3.07	4.14	3.45	0.32	0.53	1.38	2.55	0.30	0.00	1.08	0.43	0.52	0.00	1.77	0.01
54	I5_AR4	ActiveIntronRegion	0	1.85	2.22	0.00	6.92	8.35	0.00	0.00	2.94	0.00	6.20	0.84	3.21	0.00	0.00	2.27	1.85	6.36	0.00	0.00	1.67	0.93	0.00	0.00	0.00	3.44	0.00	0.00	3.26	0.00
55	I5_SR3	SilentIntronRegion	0	1.41	2.28	0.48	0.56	1.30	2.38	0.22	0.42	1.25	1.91	1.04	1.22	0.47	1.40	3.13	3.71	4.27	1.23	1.39	1.15	3.24	0.20	0.23	1.63	1.10	1.25	0.93	0.82	0.69
56	E6_Aa	NovelBoundary	0	2.30	0.00	1.37	0.00	7.37	0.00	2.92	5.08	1.13	1.52	4.52	0.00	0.00	3.79	0.00	18.51	3.24	0.00	0.00	0.00	0.00	2.33	0.00	3.05	3.41	0.00	0.00	0.00	0.00
57	ER6a	ExonRegion	0	74.92	37.18	21.93	27.59	22.98	61.11	149.67	24.60	55.92	45.87	68.86	81.52	41.89	45.06	244.01	170.48	130.50	63.02	44.74	67.20	41.53	37.61	49.56	36.57	92.97	117.16	10.78	45.01	117.50
58	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.88	0.00	4.38	0.00	5.55	0.00	1.51	0.00	1.37	7.57	10.40	0.00	0.00	0.00	0.00	5.82	2.48	4.83	0.00	0.00	2.15	0.00	6.60	0.00
59	E6a_E7a	KnownJunction	0	67.13	8.34	27.18	43.14	31.68	24.25	218.05	17.87	55.91	65.27	88.13	94.00	49.45	34.19	283.43	184.51	137.22	46.23	16.18	33.25	29.76	17.89	47.92	40.55	65.31	142.86	22.66	59.44	143.91
60	E7_Aa	NovelBoundary	0	2.48	9.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	1.95	7.77	0.00	2.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	3.83
61	ER7a	ExonRegion	0	106.32	51.06	38.54	75.02	104.08	55.96	107.76	26.43	58.35	73.88	80.11	58.35	43.55	39.76	236.17	161.44	114.57	48.81	49.05	54.95	30.53	53.90	42.63	68.57	97.55	94.53	70.82	52.09	95.23
62	E7_Da	KnownBoundary	0	97.74	81.73	18.64	30.41	79.58	59.09	83.59	12.04	81.37	75.86	103.67	48.64	52.77	37.36	259.31	165.47	97.13	55.35	48.55	73.44	63.09	37.78	25.95	86.55	89.52	55.62	59.19	45.47	72.23
63	ER7b	ExonRegion	0	103.25	93.99	25.71	46.33	62.32	53.15	95.83	21.26	78.91	67.53	69.53	39.58	45.16	40.00	263.31	146.15	103.51	46.61	63.39	88.10	45.71	59.54	31.26	70.47	96.47	56.88	63.37	35.58	77.44
64	E7_Db	KnownBoundary	1	74.14	45.57	22.85	19.84	44.21	61.58	70.43	8.81	91.08	67.83	69.60	56.72	29.77	38.09	136.33	139.15	91.70	23.12	64.74	79.14	59.64	19.64	41.07	62.99	70.35	38.75	55.26	8.40	72.93
65	ER7c	ExonRegion	0	33.27	55.29	8.04	27.38	29.37	45.13	51.50	4.56	49.34	31.89	44.07	26.40	22.08	19.72	131.29	72.85	47.30	18.08	31.68	52.86	26.86	19.44	16.88	29.51	38.26	25.16	13.23	14.05	41.96
66	ER7d	ExonRegion	0	0.00	0.47	2.24	7.31	0.00	2.75	0.00	0.00	0.48	0.83	1.70	0.00	0.37	1.68	7.20	1.08	0.00	1.95	0.00	0.40	0.00	0.26	0.00	3.69	1.02	2.69	0.00	0.70	0.00
67	IG16_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	IG16_SR4	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	IG16_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00