Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GALNT12	Gene	0	7.12	37.51	9.39	27.71	46.75	32.80	11.90	39.84	20.56	46.00	32.63	42.05	37.62	16.37	51.62	25.53	17.31	13.85	17.02	2.08	49.04	26.73	19.92	20.86	50.72	7.78	9.16	33.53	27.62
2	375011	Transcript	0	7.67	33.43	14.79	30.09	52.97	37.70	11.38	50.35	20.42	57.19	32.67	49.19	41.27	20.12	36.73	28.11	19.89	16.96	15.42	1.21	55.13	34.46	26.26	21.01	61.71	10.20	9.61	45.17	31.07
3	470473	Transcript	0	1.81	0.00	0.01	0.00	0.00	0.40	0.00	1.05	0.01	0.42	0.00	0.91	0.00	0.01	4.72	1.46	0.00	0.00	0.00	0.00	1.20	1.04	1.47	0.00	1.20	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	1.20	3.35	0.80	2.96	1.68	4.30	1.00	4.65	1.15	7.12	2.88	5.65	4.84	1.99	2.52	3.61	2.97	3.35	2.17	0.38	5.99	5.99	5.10	1.50	6.25	1.44	0.00	6.06	2.63
5	E1_Da	NovelBoundary	0	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	1	6.02	23.07	3.54	0.00	20.63	31.12	2.92	25.48	10.05	33.91	9.08	18.58	26.18	10.46	43.05	17.21	9.41	4.62	16.18	0.00	32.65	12.45	4.04	0.00	29.17	2.19	0.00	24.40	20.53
7	E1a_E3a	NovelJunction	0	0.00	0.00	1.22	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	12.73	33.62	7.10	14.32	34.90	27.08	6.63	35.93	8.03	41.05	18.80	31.07	21.87	17.14	11.93	22.24	13.20	19.96	12.30	2.48	34.12	36.04	18.80	9.78	47.98	8.14	3.74	28.51	14.29
9	E2a_E3a	KnownJunction	1	13.27	57.20	7.55	10.35	26.23	41.48	2.86	35.98	13.22	61.68	17.08	41.02	34.17	21.18	27.31	34.35	17.33	29.28	8.09	0.00	29.60	38.16	19.26	7.54	36.07	4.38	0.00	33.38	20.27
10	ER3a	ExonRegion	0	10.74	28.16	9.77	12.66	22.55	21.54	12.47	38.27	6.24	34.51	14.93	32.17	24.02	11.70	19.81	21.56	14.64	17.75	9.60	1.39	24.53	33.79	17.53	7.80	38.61	9.86	4.00	34.31	14.19
11	E3a_E4a	KnownJunction	0	7.96	22.59	4.14	30.41	24.61	18.99	10.53	34.49	5.73	13.98	11.23	27.59	14.84	7.25	34.28	16.83	10.65	9.12	0.00	0.00	24.63	28.10	12.41	2.87	35.23	3.52	2.09	16.31	8.95
12	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	0.00	1.92	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52
13	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.78	0.00	0.00	1.13	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	6.66	20.96	11.94	23.86	42.42	19.84	12.33	34.10	5.48	27.36	16.22	35.20	21.06	10.93	14.21	17.21	12.43	14.42	10.39	0.85	30.52	33.17	18.23	8.70	33.20	6.28	13.47	19.86	14.72
15	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
16	E4a_E5a	KnownJunction	0	2.30	24.63	23.25	30.84	48.63	43.85	27.46	39.02	14.10	43.46	47.99	67.59	29.90	18.35	54.61	31.67	26.92	13.87	8.09	0.00	55.99	25.38	28.86	24.05	56.34	12.70	3.68	38.01	18.32
17	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	5.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	2.30	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	4.38	0.00	0.00	0.00
18	ER5a	ExonRegion	0	5.67	31.60	17.44	19.89	54.84	58.31	17.29	50.69	19.96	61.34	54.81	55.11	43.30	26.78	39.35	31.74	23.24	24.72	16.84	1.19	81.27	37.80	22.42	21.33	78.69	14.45	13.75	50.35	33.57
19	E5_Da	NovelBoundary	0	2.71	0.00	0.00	10.57	0.00	7.67	0.00	2.19	2.74	3.71	0.00	3.46	0.00	0.00	16.74	0.00	3.44	0.00	0.00	0.00	11.99	2.29	0.00	0.00	1.93	0.00	0.00	6.60	1.98
20	E5a_E6a	KnownJunction	0	0.00	39.94	21.15	27.39	69.12	60.74	13.85	70.32	38.83	59.84	44.13	49.16	55.95	19.85	8.37	24.94	14.65	0.00	16.18	0.00	92.05	33.84	30.04	41.87	81.79	5.88	18.49	41.61	38.10
21	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.74	0.00	0.00	0.00	0.00
22	I5	Intron	0	1.36	0.87	0.60	2.59	0.44	2.49	1.09	3.83	1.98	2.87	1.72	3.57	0.64	1.88	4.49	4.04	2.70	1.95	1.16	0.25	3.49	0.65	0.65	2.33	1.03	0.85	0.00	4.57	0.97
23	I5_AR1	ActiveIntronRegion	0	1.44	0.72	1.13	1.61	1.10	3.72	0.91	7.45	1.89	5.51	2.14	5.97	1.17	3.05	3.11	6.12	5.03	2.16	2.15	0.62	4.17	1.62	0.41	3.87	1.28	2.12	0.00	5.86	0.90
24	E6_Aa	NovelBoundary	0	2.54	0.00	0.97	10.35	0.00	0.00	2.92	4.98	1.16	1.96	0.00	2.53	2.48	4.14	7.37	0.00	3.96	0.00	0.00	0.00	0.00	0.00	2.02	5.14	1.63	0.00	4.57	2.25	0.00
25	ER6a	ExonRegion	0	7.01	24.11	20.65	42.02	79.76	49.90	10.97	50.96	19.47	72.33	58.95	57.80	45.52	22.75	34.05	34.43	26.70	17.15	13.01	0.79	72.21	35.98	26.65	31.45	76.55	15.12	27.26	49.55	39.49
26	E6a_E7a	KnownJunction	1	2.95	37.81	14.80	50.47	52.02	41.55	7.50	76.24	27.19	42.30	18.57	50.18	61.68	20.98	16.14	24.48	30.55	18.49	16.18	0.00	56.80	30.48	33.74	32.42	74.22	7.21	7.45	50.55	32.68
27	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER7a	ExonRegion	0	7.27	26.45	17.11	30.36	55.74	31.14	10.58	74.51	28.00	72.14	38.19	58.55	52.79	23.59	41.71	40.24	20.85	18.92	16.46	0.47	59.90	48.14	35.21	28.81	79.18	11.08	9.41	53.84	53.76
29	E7a_E8a	KnownJunction	1	8.55	44.79	18.44	27.61	106.84	20.72	0.00	59.77	25.12	70.78	41.35	59.34	51.14	20.92	33.69	17.44	27.98	33.13	24.28	6.95	55.19	47.06	29.06	33.44	70.01	8.67	15.01	69.42	40.21
30	ER8a	ExonRegion	1	9.98	34.69	21.61	35.79	83.59	44.03	11.79	78.83	26.65	77.80	46.96	64.29	61.19	32.05	48.24	32.72	29.35	29.06	17.19	2.81	82.32	49.31	39.59	34.27	110.48	14.10	22.33	64.73	52.10
31	E8_Da	NovelBoundary	0	4.95	0.00	0.00	0.00	0.00	1.57	2.69	0.00	1.89	3.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.69	0.00	2.12	0.00	6.52	0.00	0.00	0.00	0.00
32	E8a_E9a	KnownJunction	1	12.80	38.59	35.15	37.75	122.91	71.33	12.76	79.97	48.24	121.87	35.72	81.50	70.22	39.99	61.79	65.94	23.14	18.49	24.28	0.00	105.13	61.45	43.83	25.72	101.15	19.40	6.11	82.45	60.74
33	I8	Intron	0	1.64	0.25	0.98	2.90	1.10	1.73	1.27	2.56	1.11	1.69	0.59	2.19	0.84	0.83	4.99	1.34	2.41	1.07	0.72	0.00	2.37	0.24	0.24	1.06	1.54	0.00	0.00	1.32	0.33
34	I8_AR1	ActiveIntronRegion	0	0.00	0.00	0.70	0.00	0.00	1.16	1.70	0.00	0.00	0.61	0.00	0.78	0.00	0.38	2.31	1.05	0.63	0.00	1.35	0.00	5.41	0.00	0.00	0.91	1.20	0.00	0.00	0.00	0.00
35	I8_SR1	SilentIntronRegion	0	1.84	0.28	1.01	3.25	1.23	1.80	1.22	2.88	1.24	1.82	0.66	2.37	0.95	0.89	5.33	1.38	2.64	1.20	0.64	0.00	2.01	0.27	0.27	1.09	1.59	0.00	0.00	1.48	0.37
36	E9_Aa	NovelBoundary	0	10.15	0.00	2.37	0.00	0.00	7.40	0.00	19.56	0.00	3.20	0.00	3.98	2.93	2.02	0.00	0.00	4.50	0.00	0.00	0.00	3.37	2.48	0.00	2.87	1.70	6.48	0.00	4.49	3.17
37	ER9a	ExonRegion	1	12.39	44.04	17.77	67.85	69.74	54.58	19.36	79.84	30.10	87.83	60.11	86.68	74.60	31.49	57.49	37.27	31.76	16.43	23.52	2.54	75.43	51.19	41.95	33.75	100.02	17.25	7.09	98.18	54.13
38	E9_Da	NovelBoundary	0	0.00	9.40	0.00	0.00	0.00	9.13	0.00	1.89	0.00	3.16	0.00	6.75	0.00	0.89	16.54	0.00	0.90	0.00	0.00	0.00	1.60	2.48	0.00	5.32	0.00	2.19	0.00	2.11	0.00
39	E9a_E11a	KnownJunction	0	11.92	51.29	26.04	85.85	59.83	47.92	24.32	55.69	22.32	117.20	53.05	82.74	50.95	30.82	51.23	38.17	26.99	23.12	32.37	0.00	88.56	28.39	59.25	27.04	80.62	28.45	18.09	75.98	46.38
40	I9	Intron	0	0.66	1.48	1.02	0.55	0.37	1.58	0.77	2.11	0.34	1.55	0.36	1.56	0.00	0.80	3.44	0.38	1.83	0.29	0.73	0.00	3.05	0.14	0.28	0.82	1.09	0.36	0.00	0.75	0.92
41	I9_SR1	SilentIntronRegion	0	0.66	1.48	1.03	0.55	0.37	1.58	0.77	2.12	0.34	1.55	0.37	1.56	0.00	0.80	3.45	0.38	1.83	0.30	0.74	0.00	3.06	0.14	0.28	0.82	1.10	0.36	0.00	0.75	0.92
42	E10_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	6.72	0.00	2.04	0.00	0.00	0.00	0.97	0.00	0.00	1.40	4.62	0.00	0.00	2.05	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
43	ER10a	ExonRegion	0	0.84	0.00	0.01	0.00	0.00	0.80	0.00	2.11	0.03	0.84	0.00	0.29	0.00	0.01	9.44	2.93	0.00	0.00	0.00	0.00	0.35	2.09	0.81	0.00	2.41	0.00	0.00	0.00	0.00
44	E10_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	2.19	0.00	0.00	0.00	2.53	0.00	0.00	7.97	0.00	0.00	0.00	0.00	0.00	3.53	2.43	0.00	0.00	3.83	0.00	0.00	1.98	3.37
45	E10a_E11a	KnownJunction	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	2.12	0.00	0.00	0.00	0.00	0.00	0.00
46	Ix	Intron	0	1.20	0.00	0.00	0.00	0.00	0.77	1.13	3.10	0.00	2.43	0.67	1.39	0.00	0.51	2.58	2.78	0.00	1.08	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	0.75
47	Ix_SR1	SilentIntronRegion	0	1.98	0.00	0.00	0.00	0.00	1.08	0.58	3.51	0.00	2.03	0.98	1.88	0.00	0.78	1.29	4.09	0.00	0.94	1.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.59
48	Ix_AR1	ActiveIntronRegion	0	0.17	0.00	0.00	0.00	0.00	0.37	1.96	2.69	0.00	3.12	0.26	0.77	0.00	0.15	4.54	1.09	0.00	1.33	2.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	1.02
49	E11_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	14.44	1.42	0.00	0.00	0.00	3.52	0.00	6.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.19	0.00	0.00	3.05	0.00	0.00	0.00	0.00	1.45
50	ER11a	ExonRegion	0	8.04	67.69	9.70	44.68	76.05	48.61	18.61	45.43	29.32	57.46	47.15	59.38	53.15	19.73	90.11	36.93	22.58	14.07	26.37	3.60	75.05	23.41	23.28	30.46	61.37	7.90	8.77	35.81	37.99
51	E11_Da	KnownBoundary	0	7.90	96.47	1.07	50.69	46.86	43.47	5.38	54.54	51.31	81.33	42.45	43.19	62.48	21.36	169.02	42.30	19.94	19.26	48.55	0.00	82.63	26.01	20.68	49.71	85.28	4.38	9.54	21.39	44.90
52	ER11b	ExonRegion	0	6.33	48.24	2.83	21.27	30.46	27.96	11.59	31.93	38.20	40.19	30.61	30.42	39.97	14.01	98.17	22.02	15.17	10.39	25.77	3.14	40.49	18.00	12.94	26.94	36.99	3.62	10.54	20.79	25.22