Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-405L18.3	Gene	0	22.48	39.60	55.04	11.40	11.73	44.50	3.99	17.75	17.54	30.23	33.69	55.96	58.78	30.12	22.62	17.48	41.48	36.28	54.34	11.34	51.54	10.65	61.46	54.96	62.88	58.37	41.67	41.59	28.64
2	434871	Transcript	0	8.97	15.88	22.67	4.42	4.81	17.93	1.57	7.45	6.97	11.94	13.86	21.93	24.00	11.88	9.61	6.93	15.82	15.63	22.11	4.79	20.78	4.63	25.03	22.01	25.28	25.26	15.96	18.05	11.65
3	ER1a	ExonRegion	0	0.11	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.06	0.00	0.00	0.02	0.00	0.22	0.10	0.00	0.00	0.07	0.00	0.00	0.06	0.02	0.00	0.00
4	E1_Da	NovelBoundary	0	154.48	38.78	173.36	460.07	92.40	81.53	42.22	121.63	26.77	44.46	72.19	79.40	75.25	31.84	73.75	54.08	43.94	153.22	145.44	49.70	101.28	93.88	188.08	37.09	125.93	207.02	102.82	113.59	63.62
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	Ix	Intron	0	3.05	1.08	0.72	4.88	0.00	1.27	0.25	2.85	0.21	2.41	0.66	1.30	0.48	1.23	0.00	0.46	0.65	1.07	5.53	0.12	1.76	0.11	0.22	1.73	0.88	0.19	0.11	1.11	0.17
7	Ix_SR1	SilentIntronRegion	0	3.07	1.09	0.73	4.92	0.00	1.28	0.25	2.86	0.21	2.43	0.67	1.30	0.49	1.24	0.00	0.46	0.65	1.08	5.57	0.12	1.78	0.11	0.23	1.74	0.88	0.20	0.11	1.12	0.17
8	Ix	Intron	0	2.04	1.70	0.18	0.76	2.06	2.90	0.85	2.53	2.42	3.66	1.51	2.93	0.48	0.86	3.59	0.71	2.68	0.61	9.78	2.04	2.56	0.19	0.19	0.23	0.91	0.50	1.35	0.34	0.00
9	Ix_SR1	SilentIntronRegion	0	1.49	0.70	0.12	0.00	3.11	2.90	0.95	2.74	1.48	2.94	1.31	1.71	0.64	0.23	2.77	1.08	0.91	0.61	6.69	2.06	2.48	0.28	0.29	0.09	0.56	0.00	0.55	0.50	0.00
10	Ix_AR1	ActiveIntronRegion	0	3.16	3.71	0.29	2.27	0.00	2.94	0.66	2.14	4.33	5.13	1.94	5.40	0.17	2.12	5.29	0.00	6.22	0.61	16.05	2.01	2.75	0.00	0.00	0.51	1.61	1.49	2.97	0.03	0.00
11	Ix	Intron	0	5.13	0.75	0.68	1.26	0.57	3.53	1.88	2.37	2.81	3.88	2.57	4.86	0.00	1.08	2.80	2.70	2.62	1.01	6.53	2.21	2.58	0.21	0.11	1.13	1.75	0.83	2.78	0.95	0.08
12	Ix_SR1	SilentIntronRegion	0	5.14	0.75	0.69	1.26	0.57	3.54	1.89	2.37	2.82	3.89	2.58	4.88	0.00	1.09	2.80	2.70	2.62	1.02	6.55	2.21	2.59	0.21	0.11	1.13	1.76	0.83	2.79	0.95	0.08
13	Ix	Intron	0	1.72	3.88	0.67	0.00	0.00	1.10	1.62	0.74	1.80	2.32	0.96	11.39	0.00	0.00	1.85	1.00	0.60	0.77	3.85	0.00	0.00	0.00	2.18	0.86	0.00	0.63	1.47	0.65	0.00
14	Ix_SR1	SilentIntronRegion	0	1.74	3.91	0.68	0.00	0.00	1.11	1.63	0.75	1.82	2.34	0.96	11.47	0.00	0.00	1.87	1.00	0.60	0.78	3.88	0.00	0.00	0.00	2.20	0.87	0.00	0.64	1.48	0.66	0.00
15	Ix	Intron	0	3.19	1.20	0.41	0.00	0.00	1.36	0.00	3.43	0.84	2.15	1.77	4.60	0.00	0.45	1.72	2.99	0.56	0.48	1.98	0.68	2.30	0.00	0.22	0.00	0.71	0.39	0.00	0.40	0.41
16	Ix_SR1	SilentIntronRegion	0	3.22	1.21	0.42	0.00	0.00	1.38	0.00	3.46	0.84	2.17	1.79	4.64	0.00	0.45	1.73	3.02	0.56	0.48	2.00	0.69	2.32	0.00	0.23	0.00	0.72	0.39	0.00	0.41	0.42
17	Ix	Intron	0	3.08	0.40	0.00	2.69	0.00	0.86	0.25	0.34	0.94	0.72	1.26	1.62	0.40	0.62	1.71	0.77	1.58	0.74	2.59	0.34	2.05	0.11	0.79	0.81	0.71	0.20	0.80	0.71	0.46
18	Ix_SR1	SilentIntronRegion	0	3.09	0.40	0.00	2.69	0.00	0.86	0.25	0.35	0.95	0.72	1.27	1.62	0.40	0.62	1.72	0.78	1.59	0.74	2.60	0.34	2.05	0.11	0.79	0.81	0.72	0.20	0.80	0.71	0.46
19	Ix	Intron	0	2.92	0.44	0.68	1.96	0.33	0.75	0.27	1.00	1.84	0.49	0.24	0.55	0.09	0.80	0.94	0.85	1.83	0.26	4.14	0.65	3.11	0.25	0.49	1.03	1.17	0.21	0.00	3.33	0.18
20	Ix_SR1	SilentIntronRegion	0	2.93	0.44	0.69	1.96	0.33	0.75	0.28	1.01	1.84	0.49	0.24	0.55	0.09	0.80	0.95	0.85	1.84	0.26	4.16	0.65	3.12	0.25	0.50	1.03	1.17	0.22	0.00	3.35	0.18
21	I1	Intron	0	10.20	22.95	27.37	5.46	0.00	19.88	3.45	16.12	13.24	18.68	10.19	25.95	42.29	9.73	11.37	7.89	16.48	22.73	33.44	4.20	25.79	4.46	25.81	23.33	29.65	41.57	15.34	18.92	20.37
22	I1_SR1	SilentIntronRegion	0	10.24	23.03	27.47	5.48	0.00	19.95	3.47	16.18	13.29	18.75	10.20	26.04	42.43	9.77	11.41	7.92	16.54	22.81	33.56	4.21	25.88	4.48	25.90	23.41	29.75	41.70	15.39	18.99	20.43
23	E2_Aa	NovelBoundary	0	168.93	124.97	240.50	123.16	125.71	205.46	107.05	142.13	305.83	260.45	110.47	169.94	156.32	153.04	157.66	137.16	502.20	14.13	8.09	80.22	210.42	82.70	166.81	187.58	195.56	302.63	132.74	289.27	172.89
24	ER2a	ExonRegion	0	18.28	33.40	52.48	8.03	10.92	38.39	3.08	18.33	14.12	23.63	32.02	41.99	53.93	23.24	24.53	13.99	26.69	41.58	48.65	11.82	44.61	12.64	55.63	46.07	53.74	67.97	27.52	49.03	25.82
25	E2_Da	NovelBoundary	0	19.11	39.26	41.03	26.75	12.97	30.43	4.63	15.63	16.90	19.41	25.34	63.25	59.29	41.50	40.66	19.51	38.47	18.49	24.28	4.13	24.39	22.32	59.05	60.83	71.22	78.66	47.76	47.45	45.99
26	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I2	Intron	0	23.23	41.01	52.52	9.96	11.54	26.94	1.96	17.91	19.72	28.10	34.07	34.60	48.05	22.83	21.21	14.29	27.59	46.58	49.28	6.08	33.70	10.27	60.56	46.63	61.97	65.30	49.63	42.36	24.56
28	I2_AR1	ActiveIntronRegion	0	23.97	37.77	57.57	10.36	10.55	26.10	2.34	18.93	17.77	25.19	32.12	37.17	50.49	24.59	21.42	13.73	28.38	43.88	45.79	4.91	33.63	10.77	61.01	42.08	64.73	62.86	43.41	42.95	23.59
29	I2_SR1	SilentIntronRegion	0	20.73	53.94	33.93	8.47	15.47	30.50	0.56	14.27	27.39	39.55	41.90	25.23	39.35	16.40	20.71	16.62	24.91	57.46	63.24	10.58	34.35	8.49	59.62	64.59	52.25	75.46	74.01	40.69	28.61
30	E3_Aa	NovelBoundary	0	172.71	130.79	141.09	118.20	108.02	197.06	73.52	111.08	229.22	171.53	91.17	118.40	142.82	229.48	175.40	90.50	268.06	33.65	24.28	109.99	190.97	93.39	109.19	169.82	169.38	243.49	139.25	330.74	159.75
31	ER3a	ExonRegion	0	26.44	45.99	60.86	14.06	13.11	51.25	4.79	18.91	20.71	36.07	37.30	67.64	66.06	36.08	23.50	20.68	52.40	36.57	61.68	12.02	59.29	10.52	69.46	63.99	72.68	58.27	52.28	41.22	32.42
32	IG11	Intergenic	0	19.44	24.40	59.87	7.15	21.50	34.44	5.60	31.17	20.75	26.79	19.21	63.72	46.07	33.33	22.93	19.82	41.08	42.24	34.66	7.27	43.89	9.73	55.35	38.11	56.11	73.73	35.81	53.23	23.96
33	IG11_AR1	ActiveIntergenicRegion	0	19.44	24.40	59.87	7.15	21.50	34.44	5.60	31.17	20.75	26.79	19.21	63.72	46.07	33.33	22.93	19.82	41.08	42.24	34.66	7.27	43.89	9.73	55.35	38.11	56.11	73.73	35.81	53.23	23.96