Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF707	Gene	0	17.81	27.30	49.88	16.72	22.46	21.96	7.21	8.67	25.80	37.14	17.00	34.13	27.80	56.23	23.21	32.39	67.21	60.97	15.61	19.10	19.36	22.94	22.33	45.30	22.92	34.49	21.93	50.95	45.35
2	454097	Transcript	1	6.02	4.36	91.29	19.20	83.71	17.99	0.00	7.22	12.55	22.61	21.64	42.02	15.92	34.45	9.97	18.51	63.23	42.38	8.09	33.41	9.79	23.38	11.87	2.27	5.30	15.58	24.20	55.94	60.12
3	418203	Transcript	0	0.45	0.00	0.00	0.00	0.06	0.03	0.00	0.00	0.03	0.00	0.13	0.05	0.00	0.09	0.10	0.22	1.69	0.05	0.00	0.03	0.41	0.00	0.00	0.48	0.15	0.06	0.00	0.76	0.16
4	358656	Transcript	0	2.37	4.79	10.19	0.00	0.00	2.81	0.34	0.00	4.36	12.21	5.47	15.07	0.22	11.91	0.00	3.41	24.87	7.05	0.00	0.94	9.74	8.11	6.52	1.41	2.44	23.39	20.94	18.04	7.81
5	ER1a	ExonRegion	0	14.51	21.23	40.26	33.35	62.24	18.34	3.34	7.02	8.83	18.28	15.96	31.97	10.11	28.40	12.43	45.25	38.55	49.33	13.83	21.40	15.96	17.31	19.49	7.23	13.21	30.24	26.91	48.85	31.40
6	E1_Da	KnownBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	1.97	0.00	2.75	10.22	0.00	0.00	0.00	0.00	0.00	0.00	2.63	1.86	0.00	0.00	6.34	1.68
7	E1a_E2a	KnownJunction	0	2.95	4.65	9.34	0.00	0.00	1.96	0.00	0.00	3.11	11.42	3.01	13.64	0.00	12.19	0.00	3.44	23.52	0.00	0.00	0.00	5.70	6.61	6.40	2.81	1.78	26.61	23.26	17.61	7.56
8	E1a_E3a	KnownJunction	1	6.02	4.36	91.29	19.20	83.71	17.99	0.00	7.22	12.55	22.61	21.64	42.02	15.92	34.45	9.97	18.51	63.23	42.38	8.09	33.41	9.79	23.38	11.87	2.27	5.30	15.58	24.20	55.94	60.12
9	E1a_E4a	NovelJunction	0	0.00	0.00	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	9.37	0.00	3.67	0.00	0.00	0.00	0.00	2.48	2.51	0.00	0.00	0.00	4.92	0.00	0.00
10	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05
11	ER1b	ExonRegion	0	0.91	0.00	0.00	0.00	0.12	0.06	0.00	0.00	0.05	0.00	0.25	0.10	0.00	0.18	0.20	0.45	3.38	0.10	0.00	0.07	0.82	0.00	0.00	0.96	0.30	0.11	0.00	1.51	0.32
12	E1_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	6.48	0.00	0.00	0.00	3.50	2.04	0.00	0.00	0.00	0.00	8.17	0.00	4.30	0.00	0.00	0.00	0.00	0.00	0.00	5.98	0.00	0.00	4.27	0.00	0.00
13	E1b_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I1	Intron	0	2.69	1.75	0.88	0.29	0.40	1.67	0.41	0.22	2.13	1.52	0.29	0.70	0.55	2.47	4.43	3.33	7.85	2.76	1.94	1.10	0.98	0.44	0.29	2.00	1.16	1.59	1.04	3.36	1.38
15	I1_AR1	ActiveIntronRegion	0	4.32	2.29	0.58	0.83	0.61	2.26	0.23	0.21	3.10	2.01	0.41	0.63	0.53	4.39	4.59	6.18	12.57	5.18	2.60	1.87	1.09	1.26	0.84	3.25	2.30	2.01	1.76	5.68	2.67
16	E2_Aa	NovelBoundary	0	8.61	4.17	0.00	40.77	0.00	0.00	2.92	0.00	2.92	1.48	0.00	1.33	0.00	12.74	0.00	7.42	21.32	4.62	0.00	4.13	6.14	3.99	0.00	17.29	3.33	3.78	0.00	0.00	0.00
17	E2_Ab	NovelBoundary	0	0.00	0.00	2.34	0.00	0.00	3.91	7.15	2.54	4.20	5.39	2.59	5.06	0.00	5.56	0.00	3.29	15.51	5.39	8.09	0.00	6.34	0.00	0.00	5.92	3.45	2.19	0.00	10.56	2.81
18	ER2a	ExonRegion	0	1.79	4.93	11.03	0.00	0.00	3.67	0.67	0.00	5.62	12.99	7.93	16.49	0.43	11.64	0.00	3.37	26.21	14.10	0.00	1.87	13.79	9.61	6.63	0.00	3.10	20.17	18.62	18.47	8.05
19	ER2b	ExonRegion	0	12.93	2.11	9.01	4.77	0.00	9.46	1.05	0.88	12.52	19.07	3.47	15.46	2.43	18.69	2.56	10.07	29.10	21.09	4.87	4.22	11.89	6.05	4.25	19.08	8.03	12.95	3.32	16.76	4.46
20	E2_Da	NovelBoundary	0	0.00	8.73	0.00	0.00	0.00	1.42	0.00	0.00	0.00	1.68	0.00	1.27	0.00	2.75	0.00	0.00	1.28	4.62	0.00	6.04	1.97	0.00	0.00	5.98	0.00	0.00	0.00	2.29	0.00
21	E2a_E3a	KnownJunction	0	15.10	9.70	8.67	20.71	0.00	3.49	0.00	1.89	1.37	24.49	4.75	8.73	1.40	23.07	0.00	25.55	31.90	27.74	0.00	3.23	7.42	17.94	2.51	24.34	8.18	4.29	0.00	20.17	5.81
22	I2	Intron	0	1.88	0.44	1.70	0.00	0.00	0.74	0.00	0.00	1.17	1.47	0.16	2.92	0.18	2.41	1.25	4.65	5.35	2.80	0.65	1.68	1.93	0.12	0.12	1.31	0.68	0.96	0.62	1.98	0.86
23	I2_SR1	SilentIntronRegion	0	1.89	0.44	1.70	0.00	0.00	0.74	0.00	0.00	1.18	1.47	0.16	2.92	0.18	2.42	1.25	4.66	5.37	2.81	0.65	1.68	1.93	0.12	0.12	1.31	0.68	0.96	0.62	1.99	0.86
24	E3_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	1.84	1.83	0.00	0.00	0.00	0.00	1.06	0.00	2.75	3.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	1.84	1.68
25	ER3a	ExonRegion	1	24.28	12.36	51.70	35.47	17.77	15.96	0.48	3.90	12.61	31.40	14.58	27.78	10.82	39.15	20.48	42.68	72.53	42.49	6.15	10.57	16.56	29.22	13.93	29.70	19.07	15.08	8.26	35.11	32.01
26	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	1.14	0.00	0.00	7.57	0.00	5.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00
27	E3a_E4a	KnownJunction	0	29.67	21.52	16.24	0.00	12.38	10.24	2.52	4.48	14.80	20.33	8.45	20.57	10.89	37.40	42.26	37.56	57.69	60.88	16.18	4.05	26.63	13.66	9.85	28.23	13.41	28.24	21.77	28.89	11.46
28	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.93	0.00	0.00	0.00	0.00	0.00
29	I3_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	4.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00
30	I3_AR2	ActiveIntronRegion	0	1.19	0.00	0.00	7.95	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.00	0.82	1.07	1.77	1.10	0.00	0.00	0.00	1.19	2.38	2.61	0.00	3.61	2.23
31	E4_Aa	NovelBoundary	0	7.79	0.00	2.89	0.00	14.74	3.64	0.00	0.00	0.00	0.00	1.61	1.87	0.00	1.22	0.00	0.00	2.41	0.00	7.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER4a	ExonRegion	0	22.87	32.00	12.98	0.00	10.67	20.35	9.92	8.80	15.42	39.61	21.22	29.67	15.30	60.87	16.05	34.29	60.98	60.19	17.57	23.55	16.59	25.54	20.22	35.13	27.58	34.56	22.58	41.06	36.35
33	E4_Da	NovelBoundary	0	11.27	21.04	12.83	0.00	5.75	10.09	5.44	2.24	7.52	28.96	8.89	34.22	9.04	33.21	18.34	23.71	38.63	36.99	0.00	18.44	3.09	16.58	6.30	7.72	16.67	19.31	2.14	11.19	30.83
34	E4a_E5a	KnownJunction	0	16.81	16.19	7.80	0.00	0.00	25.13	10.99	4.53	9.50	33.27	8.60	21.90	6.50	29.29	7.97	21.57	45.54	24.14	8.09	7.61	13.36	11.43	24.62	19.74	13.98	24.42	17.05	52.12	41.76
35	I4	Intron	0	4.05	4.89	2.19	0.00	1.42	2.20	0.29	0.00	3.01	1.47	0.86	1.61	0.19	2.43	3.73	4.69	7.81	6.34	1.86	2.00	1.24	0.00	0.26	3.75	2.70	0.91	0.27	2.60	0.88
36	I4_AR1	ActiveIntronRegion	0	4.06	4.90	2.19	0.00	1.42	2.20	0.29	0.00	3.02	1.47	0.87	1.62	0.19	2.44	3.74	4.70	7.83	6.36	1.86	2.01	1.25	0.00	0.26	3.76	2.71	0.92	0.27	2.61	0.88
37	E5_Aa	NovelBoundary	0	12.86	0.00	1.22	0.00	0.00	5.52	0.00	0.00	2.98	3.40	0.00	4.97	1.43	2.10	8.17	0.00	9.99	5.39	8.09	10.92	3.85	2.19	2.51	5.50	0.00	3.69	4.17	3.82	3.24
38	ER5a	ExonRegion	0	23.69	24.20	46.63	24.50	30.54	27.45	6.40	7.22	14.84	44.36	22.16	30.55	19.82	71.13	26.19	36.54	73.25	65.16	13.30	24.43	14.91	14.98	27.44	47.78	27.04	29.60	21.90	59.61	37.31
39	E5_Da	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	5.64	2.80	0.00	2.25	0.00	0.00	0.00	0.00	1.00	0.00	6.88	8.69	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
40	E5a_E6a	KnownJunction	0	22.00	36.45	97.69	10.57	104.04	21.29	2.92	18.56	27.01	56.52	32.68	33.98	27.51	88.54	8.37	30.45	79.32	42.77	0.00	22.08	14.48	22.46	20.54	33.50	24.09	42.14	21.92	23.77	34.47
41	I5_AR1	ActiveIntronRegion	0	1.66	0.00	0.35	0.00	0.00	1.22	0.05	2.01	0.70	1.85	0.74	1.17	0.27	1.36	4.98	5.16	8.26	2.05	3.31	1.22	2.28	1.28	0.52	4.44	1.19	0.66	0.00	1.48	1.72
42	I5_SR1	SilentIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.27	4.03	3.32	0.63	1.44	0.00	1.24	0.00	1.59	1.91	4.57	15.12	3.99	2.76	2.81	3.65	1.32	1.41	5.51	0.00	2.41	0.00	4.41	1.37
43	I5_AR2	ActiveIntronRegion	0	4.81	1.11	0.49	0.00	0.00	1.31	2.19	1.14	3.12	1.58	1.70	3.61	0.00	2.91	1.47	8.73	11.91	5.28	5.08	2.71	1.81	2.58	0.00	3.08	0.00	5.05	0.00	4.75	1.76
44	I5_SR2	SilentIntronRegion	0	2.12	0.00	0.55	0.00	0.00	2.31	0.04	1.03	3.42	1.97	0.00	0.00	0.00	2.20	0.00	2.59	6.91	4.17	0.94	0.00	0.49	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.19
45	I5_AR3	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	0.00	0.23	2.02	0.00	4.49	1.44	0.00	0.00	0.00	1.66	0.00	0.00	4.51	2.73	4.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.52	0.00
46	I5_SR3	SilentIntronRegion	0	2.09	0.00	1.12	0.00	0.00	1.37	2.02	0.00	4.41	0.36	0.00	0.00	0.00	1.93	0.00	2.59	3.38	1.09	1.58	0.00	0.00	0.00	0.00	2.37	0.00	4.13	0.00	3.75	0.54
47	I5_AR4	ActiveIntronRegion	0	0.66	0.00	0.40	0.00	0.00	0.35	0.16	0.00	1.04	0.00	0.00	0.00	0.00	2.23	0.00	3.83	0.28	0.00	12.18	0.00	0.00	0.00	0.00	3.20	0.00	1.93	0.00	0.00	2.96
48	E6_Aa	NovelBoundary	0	0.00	0.00	1.22	0.00	0.00	1.65	0.00	0.00	2.80	3.60	0.00	0.00	0.00	0.97	0.00	0.00	3.65	4.62	0.00	0.00	1.76	0.00	0.00	3.05	0.00	0.00	0.00	0.00	5.08
49	ER6a	ExonRegion	0	18.12	30.84	58.08	17.36	23.25	23.96	8.24	9.91	30.77	40.60	18.08	37.81	33.69	62.00	26.56	33.78	73.94	67.41	17.49	20.43	21.49	25.43	24.76	52.29	24.96	38.71	24.25	56.23	52.37
50	IG40	Intergenic	0	4.87	38.02	17.52	6.26	12.81	13.93	1.76	1.93	41.83	25.22	9.15	12.81	14.04	15.80	10.28	18.46	30.24	26.92	16.18	4.54	11.46	5.35	9.79	33.81	16.72	35.41	22.39	30.75	49.92
51	IG40_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	17.84	8.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	IG40_SR2	SilentIntergenicRegion	0	5.64	44.06	20.30	7.25	14.85	16.14	2.04	2.24	48.47	29.22	10.60	14.85	16.27	18.31	11.91	21.39	35.04	28.40	17.46	5.26	13.28	6.20	11.34	39.18	19.38	41.03	25.95	35.63	57.81