Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GEM	Gene	0	34.83	59.39	16.58	54.07	30.70	66.24	31.72	13.24	28.58	104.73	58.70	64.55	47.93	58.79	26.53	57.41	65.02	75.25	70.35	52.31	76.40	28.75	54.76	225.78	89.73	84.55	42.42	10.62	95.20
2	396194	Transcript	0	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.64	1.62	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	1.76	0.00	0.00	7.63
3	297596	Transcript	0	15.68	9.02	1.77	4.47	1.08	27.52	12.34	9.44	4.80	61.80	24.41	24.25	18.89	26.05	2.05	36.25	27.84	62.07	54.21	39.88	30.19	23.63	52.58	73.08	50.45	103.06	4.24	4.77	38.65
4	ER1a	ExonRegion	0	16.63	4.89	23.37	40.66	51.81	15.53	7.47	7.67	1.91	28.03	17.54	31.76	17.15	20.53	0.22	34.46	36.49	53.69	14.05	12.37	24.31	19.66	33.88	18.05	21.84	83.41	5.98	9.28	68.68
5	E1_Da	KnownBoundary	0	0.00	4.36	0.97	0.00	0.00	5.45	0.00	2.09	1.19	7.63	0.00	3.25	1.97	2.97	0.00	0.00	5.51	4.62	8.09	0.00	7.62	2.38	6.80	3.05	1.74	15.36	0.00	4.18	5.61
6	E1a_E2a	KnownJunction	0	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.64	1.62	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	1.76	0.00	0.00	7.63
7	ER1b	ExonRegion	0	16.91	4.66	0.96	0.32	2.17	25.43	5.80	14.95	4.67	41.35	12.38	14.49	17.08	25.09	4.09	21.79	17.68	39.37	19.40	30.72	20.12	25.49	24.04	60.27	32.49	52.57	1.11	2.89	24.54
8	E1_Db	NovelBoundary	0	2.18	0.00	0.00	0.00	0.00	1.61	2.92	0.00	0.00	1.72	0.00	1.33	1.78	7.00	0.00	0.00	0.00	28.90	16.18	0.00	3.93	0.00	0.00	7.84	3.83	14.63	0.00	0.00	9.61
9	E1b_E2a	KnownJunction	0	14.45	13.38	2.59	8.63	0.00	29.62	18.88	3.93	4.93	82.25	36.44	34.01	20.70	27.01	0.00	50.72	38.00	84.76	89.02	49.04	40.27	21.78	81.11	85.90	68.42	153.55	7.36	6.65	52.76
10	I1	Intron	0	9.20	3.06	1.13	2.85	1.36	1.58	0.40	0.29	0.31	5.62	1.14	6.13	0.93	8.13	0.40	3.47	0.95	5.97	2.92	2.29	4.48	0.86	1.29	8.21	5.80	4.56	0.36	1.36	2.45
11	I1_AR1	ActiveIntronRegion	0	4.01	0.51	1.08	4.73	3.22	0.91	0.44	0.00	0.49	2.34	0.26	3.63	0.44	3.15	0.00	1.64	0.33	2.88	0.00	2.70	4.49	2.21	0.80	4.38	3.75	0.00	0.00	0.30	1.01
12	I1_AR2	ActiveIntronRegion	0	2.14	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	3.71	1.30	5.44	0.00	0.00	0.00	3.90	0.00	5.22	3.26	1.80	0.00	2.15	4.49	0.67	0.00	1.63	4.79
13	I1_SR1	SilentIntronRegion	0	9.31	5.32	0.83	1.76	1.60	1.58	0.17	0.00	0.23	5.84	1.76	4.97	0.67	7.37	0.38	3.70	0.97	5.98	2.87	2.05	3.47	0.78	1.09	8.17	4.92	6.34	0.60	1.51	2.33
14	I1_AR3	ActiveIntronRegion	0	12.09	1.18	1.59	3.49	0.00	2.01	0.72	0.90	0.34	7.23	0.72	9.30	1.57	12.10	0.67	4.22	1.28	7.74	4.68	2.37	6.02	0.22	1.90	10.54	8.27	4.55	0.22	1.73	3.38
15	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.73	2.46	0.00	0.00	10.71	0.00	2.32	3.53	7.44	0.00	2.98	0.00	4.62	0.00	3.89	3.73	0.00	2.36	8.43	15.38	0.00	0.00	1.66	2.87
16	ER2a	ExonRegion	0	41.19	15.01	17.15	45.25	28.07	36.45	20.00	11.48	8.05	73.84	41.31	49.88	34.84	47.71	5.12	38.94	56.66	69.87	44.33	39.84	41.73	33.90	54.22	133.02	74.26	113.76	19.71	12.90	77.45
17	E2_Da	NovelBoundary	0	23.30	0.00	4.11	0.00	0.00	3.68	4.63	0.00	0.00	11.90	0.00	8.67	0.00	13.03	0.00	2.75	3.53	0.00	0.00	0.00	3.65	0.00	4.88	21.29	5.61	6.44	0.00	0.00	9.57
18	E2a_E3a	KnownJunction	0	53.56	31.41	15.15	69.24	20.93	43.97	34.27	25.33	11.94	115.84	70.29	86.99	56.49	52.82	7.77	53.70	80.90	79.11	24.28	38.54	78.14	63.45	71.51	199.07	108.39	91.06	64.61	19.90	92.01
19	I2	Intron	0	6.40	3.82	0.56	1.80	0.87	3.89	0.76	0.25	1.22	4.52	1.72	6.27	1.10	7.05	0.67	3.19	2.50	7.98	5.99	2.26	5.20	0.62	1.10	15.09	5.55	5.64	0.86	1.06	3.72
20	I2_AR1	ActiveIntronRegion	0	14.53	1.17	0.67	0.00	3.56	2.28	0.78	0.00	1.28	7.91	1.04	6.71	0.64	7.67	0.00	4.27	2.61	11.11	3.56	6.58	5.90	3.28	2.40	14.89	3.59	4.63	0.00	1.50	3.18
21	I2_AR2	ActiveIntronRegion	0	28.74	4.99	1.12	0.00	0.00	3.05	2.02	0.00	1.37	9.46	2.56	14.06	0.24	16.86	0.00	4.22	0.74	9.91	5.03	7.60	3.17	0.53	4.69	24.46	6.30	8.27	0.00	3.26	16.16
22	I2_SR1	SilentIntronRegion	0	13.74	5.54	1.14	4.73	0.48	5.73	1.46	0.35	1.78	7.90	2.82	10.58	1.82	13.21	1.17	5.63	3.95	11.68	12.20	4.21	9.35	0.92	1.95	30.23	11.17	8.27	2.24	1.79	7.85
23	I2_AR3	ActiveIntronRegion	0	7.29	0.00	0.00	0.00	4.98	2.34	0.00	0.00	1.12	2.67	1.07	4.14	2.92	8.16	0.00	0.00	3.11	6.14	1.58	0.00	4.07	0.00	0.00	30.12	11.65	2.59	0.00	0.00	3.36
24	I2_AR4	ActiveIntronRegion	0	6.64	11.68	0.00	0.60	1.02	2.52	1.01	0.15	1.59	5.20	3.54	3.50	1.32	5.49	0.38	1.68	1.37	9.81	10.57	3.08	7.66	0.30	1.05	22.86	6.89	4.90	0.91	1.08	5.43
25	I2_SR2	SilentIntronRegion	0	2.99	1.81	0.48	0.69	0.85	3.26	0.46	0.28	1.03	2.96	0.89	5.15	0.66	4.99	0.67	2.43	2.20	6.07	2.99	1.23	2.90	0.45	0.77	7.71	3.29	5.09	0.45	0.81	1.74
26	I2_AR5	ActiveIntronRegion	0	3.87	1.06	0.28	4.61	0.69	6.44	0.33	0.00	0.18	2.97	1.76	5.72	2.11	5.12	0.00	3.92	2.33	6.56	2.62	0.45	5.59	0.59	0.22	8.81	3.26	3.17	0.00	0.27	2.24
27	E3_Aa	NovelBoundary	0	6.02	0.00	0.00	9.71	0.00	0.00	2.63	0.00	0.00	1.92	3.80	7.17	0.00	8.82	0.00	0.00	3.53	14.38	16.18	0.00	7.58	4.52	0.00	8.73	3.86	2.19	0.00	0.00	0.00
28	ER3a	ExonRegion	0	51.03	46.20	21.74	44.16	38.95	85.60	33.88	26.90	21.48	144.36	85.63	76.00	58.05	74.90	14.04	64.52	88.14	82.80	65.01	41.61	106.94	51.09	99.24	271.24	128.40	156.20	57.28	16.70	104.15
29	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.38	0.00	0.00	0.00	0.00	0.00	12.68	0.00	8.49	0.00	3.60	1.13	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E3a_E4a	KnownJunction	0	53.09	9.40	25.84	49.18	17.54	76.04	44.57	27.22	21.07	119.08	83.33	72.62	58.18	67.44	0.00	81.62	88.19	94.01	24.28	52.35	108.42	35.10	105.54	243.87	137.41	116.13	34.74	8.22	102.14
31	I3	Intron	0	2.15	2.92	0.00	0.90	0.31	2.42	0.00	0.00	0.28	1.81	1.20	3.09	0.69	3.78	0.29	1.09	0.75	5.20	3.41	4.18	1.97	0.11	0.23	4.19	3.05	1.78	0.00	0.31	0.42
32	I3_AR1	ActiveIntronRegion	0	3.17	2.05	0.00	1.48	0.00	2.03	0.00	0.00	0.42	2.65	0.88	2.21	0.00	5.42	0.00	0.00	0.55	5.32	1.18	2.04	2.58	0.67	0.55	2.45	5.23	1.16	0.00	0.00	0.00
33	I3_SR1	SilentIntronRegion	0	1.95	3.11	0.00	0.78	0.37	2.50	0.00	0.00	0.26	1.65	1.26	3.28	0.83	3.45	0.35	1.32	0.79	5.19	3.88	4.63	1.85	0.00	0.16	4.56	2.61	1.91	0.00	0.37	0.51
34	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	9.27	3.07	0.00	1.06	0.00	3.37	0.00	4.62	0.00	0.00	0.00	0.00	2.27	2.87	1.40	9.74	0.00	0.00	0.00
35	ER4a	ExonRegion	0	56.99	26.76	37.99	56.79	35.65	66.02	44.44	24.23	21.89	122.63	65.55	76.67	53.53	78.11	21.86	55.91	83.93	82.75	53.63	56.71	77.25	40.79	78.99	204.09	113.08	141.91	38.07	16.13	106.10
36	E4_Da	NovelBoundary	0	5.66	0.00	0.00	0.00	0.00	1.46	0.00	0.00	4.05	0.00	0.00	4.40	0.00	6.69	0.00	0.00	0.00	18.88	16.18	0.00	9.39	0.00	0.00	4.79	3.30	7.68	0.00	0.00	0.00
37	E4a_E5a	KnownJunction	0	61.34	48.18	21.13	21.57	18.72	40.36	54.07	18.96	19.82	95.63	41.44	59.37	44.33	56.83	9.57	27.46	81.21	61.13	40.46	54.66	55.19	31.26	62.35	143.50	101.38	74.11	58.59	8.31	74.87
38	I4	Intron	0	3.65	1.78	0.57	1.83	0.83	2.05	0.94	0.08	0.33	1.97	0.86	2.99	0.41	4.43	0.39	1.63	1.34	2.89	2.72	1.96	1.64	0.39	0.31	8.62	3.35	4.49	0.16	0.28	1.93
39	I4_SR1	SilentIntronRegion	0	5.92	1.26	1.37	2.83	0.00	3.18	0.42	0.00	0.78	1.86	0.24	2.05	0.00	4.67	0.46	0.49	1.49	1.50	3.19	0.99	1.41	0.71	0.00	9.36	4.96	4.30	0.00	0.32	0.49
40	I4_AR1	ActiveIntronRegion	0	6.43	5.63	2.40	0.00	0.00	2.55	4.03	0.00	0.00	5.78	0.00	0.88	0.00	5.44	5.60	0.00	2.00	8.19	5.17	2.81	0.00	0.00	0.00	9.53	7.76	1.80	0.00	0.00	1.34
41	I4_SR2	SilentIntronRegion	0	2.67	2.94	0.72	1.68	0.00	1.62	1.82	0.00	0.46	1.68	0.69	3.26	0.15	6.17	0.72	2.54	1.54	3.77	3.65	2.28	1.34	0.42	0.00	8.18	3.31	3.69	0.22	0.57	1.95
42	I4_AR2	ActiveIntronRegion	0	1.42	0.52	0.00	1.16	3.16	2.89	0.33	0.14	0.00	1.87	1.71	2.46	0.47	2.13	0.00	1.22	0.73	2.65	2.05	2.08	2.40	0.01	0.29	7.77	2.55	3.42	0.30	0.00	1.74
43	I4_SR3	SilentIntronRegion	0	6.69	1.84	0.00	2.04	0.00	0.00	0.57	0.28	0.00	2.89	0.73	4.79	1.57	4.00	0.00	1.89	1.70	3.02	0.94	2.40	1.46	0.51	1.54	10.30	2.45	8.79	0.00	0.00	4.37
44	E5_Aa	NovelBoundary	0	2.71	0.00	0.00	0.00	0.00	1.50	0.00	2.34	0.00	12.98	0.00	6.20	1.53	4.08	0.00	3.44	2.68	9.25	0.00	3.64	3.89	3.89	1.92	16.69	0.00	13.30	4.37	4.49	10.76
45	ER5a	ExonRegion	0	32.10	86.41	13.55	62.39	30.62	81.07	37.16	11.58	39.86	120.27	68.41	73.18	55.39	64.22	37.86	67.20	69.68	80.17	89.60	61.07	93.14	25.41	53.21	284.08	99.19	66.94	55.04	9.63	106.15