Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LSM1	Gene	0	419.79	295.90	259.28	545.46	756.45	365.31	859.01	525.62	342.18	212.78	316.20	230.43	224.29	208.36	766.57	371.55	181.70	177.96	455.39	716.88	266.33	376.65	228.37	256.76	385.47	225.77	514.10	226.89	368.56
2	311351	Transcript	0	461.33	293.22	230.25	586.12	924.60	456.83	1283.02	534.06	338.58	273.71	422.33	308.22	266.93	233.83	930.95	477.82	261.26	208.39	534.23	846.81	367.72	387.96	311.30	314.85	516.61	381.36	646.56	353.95	507.46
3	IG39	Intergenic	0	44.11	5.69	28.13	52.60	83.90	16.73	56.27	29.98	13.43	13.69	9.80	23.83	8.46	19.04	23.23	17.58	16.03	12.35	36.59	41.03	13.27	24.84	15.21	10.78	22.25	28.12	45.56	34.42	31.00
4	IG39_AR1	ActiveIntergenicRegion	0	44.41	5.73	28.33	52.97	84.49	16.85	56.67	30.19	13.53	13.79	9.87	23.99	8.52	19.17	23.39	17.71	16.14	12.44	36.85	41.32	13.37	25.02	15.32	10.85	22.41	28.32	45.88	34.66	31.22
5	ER1a	ExonRegion	0	237.00	121.30	165.31	484.60	684.69	160.45	514.34	271.34	142.54	98.08	118.94	143.72	128.20	83.74	394.82	287.53	143.49	118.14	194.80	381.34	160.90	250.19	161.31	94.50	174.35	219.35	228.81	208.24	298.97
6	E1_Da	NovelBoundary	0	3.01	4.07	1.00	0.00	6.63	3.41	2.69	0.00	3.11	1.96	0.00	2.65	0.00	0.00	7.37	3.82	5.83	13.87	0.00	11.00	2.05	4.08	0.00	0.00	1.70	2.19	4.97	1.66	3.27
7	E1a_E2a	KnownJunction	0	575.46	377.82	131.82	268.32	360.32	575.90	2107.74	775.80	519.03	383.12	476.70	322.49	351.78	228.57	1367.53	1000.91	271.48	354.60	679.09	1214.93	662.98	561.09	399.32	294.65	706.86	570.59	325.42	319.19	503.49
8	I1	Intron	0	5.54	2.07	1.20	2.45	1.58	5.08	1.16	0.89	3.22	1.89	1.65	2.88	0.95	4.27	2.54	4.89	6.62	4.82	5.05	3.02	2.84	0.52	0.78	1.97	2.72	1.18	1.64	1.17	2.67
9	I1_AR1	ActiveIntronRegion	0	4.19	0.98	2.30	1.65	0.00	1.58	0.46	0.85	2.03	1.00	0.27	0.49	0.00	2.08	1.16	2.76	2.49	4.04	2.94	4.03	0.66	1.04	0.83	0.14	1.31	0.25	0.63	0.37	1.23
10	I1_SR1	SilentIntronRegion	0	1.44	0.85	0.56	0.81	0.00	2.16	1.81	0.62	2.73	0.49	0.40	1.53	0.00	2.34	1.65	1.72	2.26	4.09	1.44	3.28	1.28	0.20	0.00	0.59	1.12	0.46	0.82	0.55	1.50
11	I1_AR2	ActiveIntronRegion	0	8.25	2.16	1.29	3.50	2.96	6.62	1.23	0.56	3.52	3.37	2.10	4.25	1.65	6.52	2.18	7.14	9.61	6.11	5.85	3.51	4.61	0.77	1.10	2.71	3.80	2.01	2.98	1.66	4.48
12	I1_SR2	SilentIntronRegion	0	5.73	2.93	0.95	2.65	1.82	6.55	1.12	1.28	3.68	1.72	2.37	3.37	1.20	4.26	3.73	5.38	7.83	4.48	6.79	2.15	3.03	0.25	0.84	2.72	3.13	1.23	1.38	1.38	2.38
13	E2_Aa	NovelBoundary	0	5.07	0.00	2.49	0.00	0.00	1.50	0.00	0.00	0.00	0.00	7.31	0.00	1.34	5.36	8.37	11.32	10.42	0.00	8.09	0.00	4.09	0.00	0.00	0.00	10.53	0.00	0.00	0.00	1.25
14	ER2a	ExonRegion	0	438.88	240.99	150.52	338.50	450.65	473.17	1497.38	491.03	341.76	321.46	468.20	385.98	301.58	238.36	1074.42	554.85	320.44	261.37	676.12	834.61	397.65	355.79	394.70	283.61	611.22	473.11	596.95	387.31	575.32
15	E2_Da	NovelBoundary	0	0.00	0.00	1.17	0.00	0.00	1.96	0.00	0.00	0.00	0.00	3.23	1.69	0.00	3.39	0.00	0.00	4.23	0.00	0.00	0.00	0.00	0.00	0.00	4.73	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	346.78	249.74	160.13	333.03	822.63	378.92	961.78	399.47	253.03	242.11	412.86	411.62	291.12	211.53	895.14	308.14	381.19	145.00	541.97	791.10	289.40	293.50	430.20	332.87	445.87	615.95	1105.12	691.09	910.08
17	E2a_E4a	NovelJunction	0	108.42	47.21	36.85	80.45	84.44	75.89	128.10	165.47	38.92	14.18	32.58	54.49	29.84	38.38	204.50	59.90	55.89	13.87	97.11	140.75	21.70	50.08	33.05	30.15	57.09	41.67	158.63	66.09	81.21
18	I2	Intron	0	2.26	2.73	0.39	1.12	1.34	2.47	1.97	0.36	2.69	1.30	1.21	1.76	0.38	1.94	3.38	3.00	4.14	3.30	5.11	2.35	2.90	0.21	0.28	2.02	0.73	0.25	0.29	0.45	1.62
19	I2_AR1	ActiveIntronRegion	0	2.76	0.00	0.00	1.67	0.64	0.57	0.23	0.00	4.03	1.63	0.00	2.16	0.78	2.44	0.00	6.44	2.58	5.50	6.53	5.86	6.03	0.00	0.00	1.32	0.71	0.00	0.00	0.00	1.11
20	I2_SR2	SilentIntronRegion	0	2.43	4.07	0.36	1.88	1.39	3.42	2.44	0.00	3.20	1.24	1.53	2.10	0.62	1.64	2.76	3.59	4.67	3.64	6.42	3.18	3.03	0.00	0.52	1.57	0.64	0.11	0.39	0.23	2.14
21	E3_Aa	NovelBoundary	0	0.00	0.00	2.57	10.78	0.00	1.96	2.17	0.00	3.93	1.52	5.50	0.00	0.00	3.88	9.97	2.98	2.93	0.00	8.09	0.00	0.00	0.00	0.00	9.15	1.93	0.00	0.00	0.00	0.00
22	ER3a	ExonRegion	0	516.19	310.51	383.60	739.59	1389.42	524.46	1217.34	536.37	257.07	288.47	528.10	348.99	268.57	282.90	755.17	344.20	276.62	185.98	494.99	944.89	368.66	340.07	273.89	396.66	535.51	352.90	1033.55	410.35	537.15
23	E3_Da	NovelBoundary	0	0.00	4.27	0.00	0.00	13.26	4.68	0.00	0.00	0.00	0.00	8.26	0.00	0.00	0.00	0.00	0.00	1.40	0.00	8.09	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E3a_E4a	KnownJunction	0	634.45	370.06	330.82	1381.29	2079.41	675.38	1833.51	617.00	400.72	348.76	613.05	322.74	278.86	346.31	1128.35	457.08	277.29	200.99	614.58	955.67	420.64	467.60	293.48	504.96	724.06	272.72	720.37	290.80	393.85
25	I3_SR2	SilentIntronRegion	0	2.87	2.23	0.77	1.65	0.00	1.59	0.00	1.70	0.65	1.00	0.00	0.71	0.00	1.87	3.40	2.13	2.41	1.78	2.21	3.82	1.32	0.00	0.00	3.97	1.65	1.81	0.85	0.38	2.00
26	E4_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.92	0.00	0.00	1.55	0.00	1.49	0.00	0.00	2.15	0.00	0.00	5.04	9.25	0.00	0.00	3.89	0.00	0.00	8.85	3.86	0.00	0.00	0.00	1.95
27	I3_AR2	ActiveIntronRegion	0	3.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	0	480.57	382.14	289.54	557.51	685.10	409.56	849.04	647.38	455.88	233.99	338.47	222.01	248.41	245.40	901.25	392.00	158.33	192.64	538.02	805.12	273.84	447.49	226.22	296.69	418.44	164.91	515.68	170.70	333.34
29	IG38_AR6	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	5.14	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	1.39	0.00	0.00	0.59	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00
30	IG38_SR4	SilentIntergenicRegion	0	2.28	1.71	0.44	5.71	6.93	0.73	1.07	3.42	0.60	0.77	1.90	1.31	0.00	1.21	2.45	0.47	1.09	1.02	0.85	0.73	0.54	1.92	0.48	1.71	1.14	0.83	4.06	1.73	1.95