Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRIM35	Gene	0	27.03	51.37	60.28	35.23	61.47	57.18	15.76	18.85	47.30	50.01	58.18	59.29	33.89	82.90	33.59	73.57	76.46	62.20	40.44	46.11	61.87	55.94	58.72	60.99	61.15	101.25	73.26	42.53	43.95
2	305364	Transcript	0	24.33	26.83	45.44	18.55	34.00	43.17	11.95	13.29	18.21	34.62	28.62	44.19	23.96	76.53	13.03	58.41	63.45	53.72	46.02	32.18	39.28	55.12	56.29	35.75	35.31	78.89	32.50	34.11	22.51
3	380544	Transcript	0	0.88	2.80	1.60	0.82	0.56	0.16	0.24	0.00	0.81	1.45	1.26	1.21	0.46	1.42	0.53	2.67	2.20	0.88	0.36	0.31	0.34	0.01	4.08	0.00	1.99	0.00	0.02	0.37	0.00
4	ER1a	ExonRegion	0	0.04	1.04	1.71	7.70	19.40	0.24	0.42	0.03	0.95	1.42	0.27	0.87	0.71	1.58	0.00	6.30	1.18	5.99	0.79	0.00	2.33	1.83	4.79	0.00	2.51	12.85	1.22	3.49	5.86
5	E1_Ab	KnownBoundary	0	0.00	4.65	7.90	29.98	73.69	0.00	2.40	0.00	4.17	7.19	1.33	5.54	4.39	6.87	0.00	24.10	8.76	27.74	8.09	0.00	9.23	10.02	22.16	0.00	9.81	56.56	4.87	12.27	17.40
6	ER1b	ExonRegion	0	20.69	8.93	32.01	21.87	33.11	26.64	9.71	6.64	9.27	17.30	10.50	25.18	11.89	38.98	6.06	56.36	46.14	40.71	9.25	26.98	23.01	35.66	35.16	16.57	17.65	60.93	9.71	22.30	19.02
7	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	6.19	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.31	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	3.01	4.85	2.99	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	2.35	0.00	3.75	0.00	0.00	0.00	0.00	0.00	0.00	7.54	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E3a	KnownJunction	0	28.02	4.75	62.74	27.82	83.56	46.89	18.25	15.78	11.27	63.51	38.69	57.68	27.86	86.21	16.74	94.48	78.35	76.03	24.28	38.54	37.50	59.46	69.84	35.23	32.20	117.97	9.74	47.18	23.64
10	E1a_E4a	NovelJunction	0	0.00	0.00	2.47	0.00	0.00	0.00	2.92	2.54	0.00	2.04	0.00	5.15	4.36	2.26	0.00	0.00	1.15	0.00	0.00	0.00	0.00	1.94	4.24	0.00	0.00	0.00	2.34	0.00	0.00
11	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.50	1.70	1.86	3.26	2.22	0.63	0.95	0.00	1.35	2.18	3.46	3.53	0.44	1.30	2.10	3.12	3.54	3.51	1.45	1.25	1.36	0.03	4.34	0.00	2.58	0.01	0.07	1.50	0.01
13	E2_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	2.23	0.00	1.80	4.03	0.00	3.04	0.00	0.00	9.97	2.91	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3a	KnownJunction	0	0.00	4.65	1.54	0.00	0.00	0.00	0.00	0.00	0.00	3.64	1.58	1.30	1.40	2.04	0.00	3.82	5.27	0.00	0.00	0.00	0.00	0.00	4.43	0.00	5.38	0.00	0.00	0.00	0.00
15	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.37	3.29	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.03	0.00
16	ER3a	ExonRegion	0	29.92	25.96	62.60	25.44	64.97	56.65	18.11	14.47	13.89	67.47	33.09	60.05	27.74	104.74	14.83	74.92	94.71	78.34	33.72	47.19	39.82	69.70	74.78	37.96	48.84	93.63	29.07	38.91	30.28
17	E3_Da	NovelBoundary	0	27.02	47.80	54.76	9.92	51.43	46.00	18.71	15.58	15.99	49.45	30.65	40.45	25.63	101.77	17.74	59.21	89.88	60.49	48.55	48.46	47.21	59.36	69.10	53.30	28.75	62.87	28.73	34.91	18.59
18	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3b_E4a	KnownJunction	0	37.87	38.68	59.45	18.98	19.01	59.32	10.36	16.02	23.75	29.84	26.54	58.28	34.55	106.73	9.77	50.95	91.64	78.34	104.98	39.20	52.34	91.50	78.26	45.28	47.74	99.17	45.22	47.40	24.03
21	ER3b	ExonRegion	0	34.21	41.00	60.41	16.38	31.08	56.97	14.27	14.43	16.31	40.31	31.66	51.65	31.33	117.77	12.10	59.22	93.00	70.63	68.97	42.05	49.07	77.81	73.20	46.12	43.05	91.97	38.32	37.43	22.87
22	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.39	0.00	0.00	1.42	1.08	0.49	0.00	0.00	0.90	0.52	0.99	0.64	0.00	0.48	0.00	0.00	0.81	0.00	0.32	0.25	0.00	0.00	0.00	0.00
23	I3_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.00	0.00	2.38	0.00	0.00	1.34	11.20	1.81	1.19	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER4a	ExonRegion	0	39.29	24.08	79.48	28.25	37.02	61.53	19.45	30.00	16.37	52.73	47.58	68.41	34.00	119.15	14.57	104.28	98.58	72.26	45.62	54.49	66.91	90.85	94.73	62.53	66.53	138.59	56.92	56.70	43.07
25	E4_Ab	KnownBoundary	0	41.70	26.86	91.24	18.77	47.31	81.80	28.66	34.64	35.02	85.16	59.76	80.00	57.70	115.99	15.75	118.73	132.94	56.12	32.37	70.46	83.83	80.22	107.46	85.36	71.30	167.45	80.41	108.55	72.89
26	ER4b	ExonRegion	0	44.73	43.81	84.89	43.77	47.31	64.92	21.95	31.99	30.98	75.76	55.96	92.32	47.40	150.79	18.76	88.77	125.92	93.35	47.89	57.63	74.71	97.55	100.54	69.71	77.94	167.94	62.86	72.90	65.13
27	E4_Da	NovelBoundary	0	2.48	0.00	2.52	0.00	0.00	1.88	0.00	0.00	0.00	1.68	1.61	1.45	0.00	2.24	0.00	3.82	2.77	5.14	16.18	7.86	3.73	0.00	2.31	0.00	0.00	1.97	1.99	0.00	0.00
28	E4a_E5a	KnownJunction	0	31.97	29.47	43.23	40.98	38.17	49.30	12.53	20.65	24.70	35.15	45.11	69.43	24.42	120.78	16.34	74.20	56.66	90.16	32.15	57.81	39.31	114.79	66.73	56.29	66.75	108.27	19.38	40.48	54.31
29	E4a_E6a	NovelJunction	0	8.20	0.00	13.70	0.00	0.00	3.80	0.00	2.39	0.00	0.00	4.56	10.06	1.85	6.65	0.00	0.00	3.60	10.79	0.00	0.00	5.37	2.29	11.92	3.05	0.00	2.19	0.00	0.00	0.00
30	I4	Intron	0	2.96	0.89	1.02	0.00	1.08	3.95	0.22	0.61	0.50	2.56	1.25	1.81	0.50	2.48	2.70	2.16	3.63	3.68	5.83	0.46	2.92	0.50	0.70	1.31	1.50	1.56	1.22	0.81	1.03
31	I4_AR1	ActiveIntronRegion	0	0.61	0.00	0.00	0.00	0.00	1.60	0.00	1.71	0.80	0.89	2.58	3.06	0.00	3.11	1.73	0.90	0.48	2.86	6.68	0.87	2.11	0.00	0.00	1.64	0.51	0.56	1.40	0.82	0.00
32	I4_SR1	SilentIntronRegion	0	4.00	0.00	1.38	0.00	1.35	1.53	0.00	0.63	0.28	2.98	1.38	1.85	1.07	3.66	2.39	3.21	2.77	1.48	3.77	0.56	3.85	0.99	1.00	0.22	0.28	2.04	0.69	0.71	0.92
33	I4_AR2	ActiveIntronRegion	0	3.76	0.00	1.05	0.00	1.84	4.65	0.51	0.46	0.77	2.53	1.49	1.86	0.65	2.49	3.58	1.78	3.37	3.42	6.41	0.00	3.04	0.45	0.91	1.89	2.15	1.97	2.07	0.82	1.42
34	I4_SR2	SilentIntronRegion	0	1.55	2.90	0.90	0.00	0.00	4.95	0.00	0.66	0.21	2.60	0.64	1.56	0.00	1.63	1.82	2.24	5.11	5.67	6.33	0.99	2.31	0.32	0.33	1.16	1.55	0.85	0.33	0.88	0.72
35	E5a_E6a	KnownJunction	0	16.04	22.49	58.92	20.71	47.45	50.18	11.16	28.12	42.09	49.85	47.14	65.66	24.81	105.71	41.06	114.82	84.41	93.88	24.28	63.18	37.78	63.98	60.33	40.50	37.39	140.97	27.04	51.36	54.27
36	ER5a	ExonRegion	0	28.98	26.14	67.96	37.84	45.27	54.99	17.00	30.18	39.86	50.16	54.85	88.84	28.69	142.37	30.68	110.25	99.17	88.05	29.91	72.71	45.71	105.34	76.65	56.77	61.90	146.84	20.55	52.59	69.97
37	I5	Intron	0	4.23	1.89	2.57	0.00	1.07	2.41	1.03	1.62	2.09	2.32	2.26	2.84	0.81	5.17	2.56	3.63	9.39	6.06	4.21	2.60	3.65	0.66	1.59	1.89	1.78	3.45	0.67	1.07	1.66
38	I5_AR1	ActiveIntronRegion	0	1.61	1.78	3.62	0.00	0.72	1.22	0.51	1.25	1.41	1.30	3.12	2.77	0.33	4.61	2.84	4.38	9.01	6.54	5.63	3.19	2.30	1.02	1.33	2.28	1.73	4.16	1.35	0.96	2.45
39	I5_SR1	SilentIntronRegion	0	6.88	2.00	1.54	0.00	1.43	3.62	1.55	1.99	2.78	3.36	1.42	2.94	1.28	5.74	2.29	2.91	9.83	5.62	2.81	2.02	5.02	0.31	1.86	1.51	1.84	2.76	0.00	1.19	0.88
40	E6_Aa	NovelBoundary	0	10.62	0.00	1.54	0.00	0.00	1.96	0.00	7.61	1.46	3.56	3.04	5.57	5.38	7.84	0.00	0.00	9.34	0.00	0.00	0.00	5.66	0.00	5.02	2.87	0.00	1.85	0.00	0.00	3.20
41	ER6a	ExonRegion	0	44.99	33.76	92.36	26.92	57.31	59.46	15.48	28.64	35.74	64.96	60.51	91.98	42.53	148.57	21.70	82.56	134.68	105.47	31.30	51.96	61.73	102.06	86.42	65.29	74.33	158.68	59.07	59.68	62.32
42	E6a_E7a	KnownJunction	0	46.60	49.93	119.39	83.47	92.11	74.20	41.54	22.94	50.86	79.89	96.74	116.08	66.36	177.23	8.37	117.81	165.35	159.38	24.28	58.47	87.72	131.32	115.24	100.13	103.16	217.70	133.29	145.40	97.72
43	E7_Aa	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	0.00	1.02	0.00	0.00	2.36	0.00	0.00	3.39	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER7a	ExonRegion	0	35.03	66.58	84.69	48.99	90.41	74.83	19.91	26.53	64.49	67.89	84.20	77.04	46.31	106.99	47.35	93.05	101.22	80.95	52.36	61.43	86.17	73.57	76.32	87.00	87.46	139.75	105.68	57.12	60.31
45	E7_Da	KnownBoundary	0	10.74	45.66	14.75	8.63	38.61	39.17	10.07	9.46	61.94	25.61	21.32	26.93	10.03	35.56	17.54	48.88	21.63	41.61	32.37	7.44	27.52	15.17	16.55	34.75	30.16	7.60	56.66	14.24	33.38
46	ER7b	ExonRegion	0	6.53	51.41	8.85	12.18	13.94	34.08	8.93	3.47	40.61	19.93	26.99	28.25	15.30	27.71	24.98	35.23	17.96	19.04	31.47	18.81	27.53	9.27	16.92	25.32	19.86	12.81	43.58	12.48	15.57
47	IG6_AR12	ActiveIntergenicRegion	0	5.94	6.75	8.42	4.93	8.25	9.03	3.01	5.37	10.08	10.33	7.37	10.77	4.50	14.43	7.89	11.75	13.61	5.24	5.36	3.31	4.97	9.19	12.39	12.08	8.14	15.29	13.30	13.30	6.41
48	IG6_SR7	SilentIntergenicRegion	0	2.40	6.88	4.62	4.10	9.06	7.84	2.11	4.75	11.73	5.30	5.16	7.53	3.48	8.83	5.92	5.97	11.17	3.45	2.14	2.62	5.03	2.79	4.37	7.01	4.85	14.66	8.33	10.40	3.55
49	IG6_AR11	ActiveIntergenicRegion	0	3.67	12.82	2.59	1.74	9.31	12.01	4.51	2.81	11.86	9.99	9.06	10.07	3.71	9.46	9.61	12.86	14.25	3.39	12.51	10.16	7.49	2.65	3.09	12.86	7.21	5.07	11.83	6.40	4.68
50	IG6_AR10	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.47	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00	2.11	1.43	0.00	0.00	0.00	0.00