Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC068587.3	Gene	0	18.14	12.97	15.28	15.35	29.29	16.51	14.55	7.36	19.26	16.90	11.99	8.26	5.97	24.94	15.78	19.80	24.53	16.77	8.34	11.44	18.76	19.08	23.60	37.68	22.56	6.99	15.72	13.36	13.14
2	357132	Transcript	0	15.37	11.21	10.83	5.79	30.18	14.84	18.61	4.42	9.23	11.79	8.24	4.76	3.86	19.84	8.23	12.41	15.37	18.51	6.97	7.95	14.52	13.80	14.23	27.59	16.60	4.06	9.92	13.01	11.19
3	IG49_SR1	SilentIntergenicRegion	0	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	12.50	4.35	9.71	1.23	24.19	6.94	7.53	3.96	4.21	8.41	4.22	3.65	4.25	10.65	3.45	7.72	8.80	14.09	1.60	5.96	11.48	8.22	9.74	24.19	14.61	2.78	4.58	9.19	7.26
5	E1_Da	NovelBoundary	0	2.71	9.31	14.03	9.71	0.00	9.40	0.00	0.00	4.05	3.83	4.21	5.15	9.81	2.04	0.00	0.00	5.81	0.00	0.00	3.80	9.15	0.00	0.00	0.00	5.30	0.00	2.24	4.31	0.00
6	E1a_E2a	KnownJunction	0	17.99	18.03	7.67	0.00	84.15	26.24	9.73	6.97	13.55	16.66	10.98	6.20	7.71	27.12	0.00	7.42	14.95	32.75	16.18	7.28	30.04	16.29	17.83	50.54	35.84	2.06	9.99	14.11	21.36
7	E1a_E4a	NovelJunction	0	0.00	0.00	1.54	0.00	6.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	3.82	1.37	0.00	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00
8	I1	Intron	0	3.41	7.98	2.92	2.28	2.33	13.33	0.64	1.76	6.24	9.18	7.00	4.52	3.39	2.52	2.48	6.87	8.54	4.03	0.51	0.88	4.31	1.43	0.86	3.76	1.59	0.25	1.45	7.51	2.44
9	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	5.50	0.00	0.00	1.12	5.78	0.00	1.24	0.00	0.00	0.00	5.91	1.67	0.00	0.00	0.00	2.85	0.00	0.00	0.00	0.00	0.00	0.00	3.80	0.00
10	I1_AR2	ActiveIntronRegion	0	3.45	8.08	2.96	2.31	2.36	13.45	0.65	1.78	6.30	9.24	7.08	4.57	3.43	2.55	2.51	6.91	8.63	4.08	0.51	0.89	4.33	1.45	0.87	3.81	1.61	0.25	1.47	7.57	2.47
11	E2_Aa	NovelBoundary	1	2.48	0.00	11.31	21.57	7.37	7.21	0.00	0.00	12.97	5.79	1.39	4.01	7.74	2.48	0.00	7.65	6.01	0.00	0.00	0.00	6.86	0.00	2.51	2.45	5.04	4.12	0.00	20.35	1.85
12	ER2a	ExonRegion	0	26.29	10.01	19.67	18.91	33.04	30.14	9.55	6.17	14.10	22.19	22.30	8.42	8.31	32.22	8.14	19.16	20.42	30.30	12.82	21.21	37.23	16.98	12.26	45.93	28.59	4.00	8.82	18.24	16.01
13	E2_Da	NovelBoundary	0	0.00	0.00	8.37	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	1.88	0.00	0.00	0.00	7.34	0.00	0.00	0.00	3.41	0.00	0.00	0.00	0.00	0.00	0.00	3.95	1.39
14	E2a_E3a	KnownJunction	0	8.67	3.97	4.48	0.00	5.60	14.39	5.84	0.00	0.00	2.04	5.98	1.54	1.62	4.83	0.00	6.81	9.36	9.25	8.09	0.00	5.74	2.48	0.00	7.66	12.31	0.00	0.00	0.00	13.57
15	E2a_E4a	NovelJunction	0	2.83	0.00	2.79	0.00	7.37	0.00	0.00	0.00	0.00	3.60	0.00	4.40	0.00	2.15	0.00	0.00	0.00	4.50	0.00	4.13	2.05	7.15	0.00	2.87	0.00	0.00	0.00	0.00	5.22
16	I2	Intron	0	2.35	2.09	2.58	1.46	2.18	2.01	0.57	0.15	4.90	3.58	0.48	3.33	1.92	1.58	2.51	0.98	4.19	1.98	2.86	0.67	2.84	0.66	0.15	2.88	1.80	0.51	0.67	4.11	1.50
17	I2_SR1	SilentIntronRegion	0	2.35	2.10	2.59	1.46	2.18	2.01	0.57	0.15	4.90	3.58	0.48	3.33	1.92	1.58	2.51	0.98	4.19	1.98	2.86	0.67	2.84	0.66	0.15	2.89	1.80	0.51	0.67	4.11	1.50
18	E3_Aa	NovelBoundary	1	15.81	0.00	40.19	10.78	47.90	19.61	5.84	4.88	16.26	8.67	18.82	13.73	6.34	31.79	9.97	3.06	27.87	9.25	8.09	26.55	13.52	26.40	20.68	21.17	16.10	0.00	6.86	31.77	37.24
19	ER3a	ExonRegion	1	19.84	5.67	13.74	0.00	34.55	26.16	6.86	6.09	5.26	23.36	13.95	4.63	3.88	32.05	7.50	17.72	15.49	21.92	2.04	9.57	24.41	14.54	7.35	26.26	14.06	2.48	6.03	19.40	13.66
20	E3_Da	NovelBoundary	0	10.79	13.38	8.97	0.00	0.00	3.53	0.00	0.00	7.55	10.79	1.58	4.19	4.46	1.06	16.94	0.00	13.57	0.00	8.09	0.00	3.85	1.90	0.00	0.00	5.42	5.41	5.07	4.40	1.29
21	E3a_E4a	KnownJunction	0	37.51	8.24	14.50	0.00	57.92	20.80	10.81	5.87	7.80	18.93	5.92	3.83	3.09	29.31	0.00	19.28	20.03	55.35	0.00	3.80	18.41	19.79	9.75	53.36	15.99	0.00	8.70	26.15	15.38
22	I3	Intron	0	1.22	0.56	1.53	1.56	1.49	0.90	0.53	0.32	3.13	1.64	1.30	0.73	0.62	1.42	1.04	0.94	2.54	1.02	0.56	0.24	2.05	0.87	0.71	1.50	1.37	0.48	0.00	1.78	1.05
23	I3_SR1	SilentIntronRegion	0	1.22	0.56	1.53	1.56	1.49	0.90	0.53	0.32	3.13	1.64	1.30	0.73	0.62	1.42	1.04	0.94	2.54	1.02	0.56	0.24	2.05	0.87	0.71	1.50	1.37	0.48	0.00	1.78	1.05
24	E4_Aa	NovelBoundary	0	0.00	0.00	3.84	0.00	0.00	0.00	0.00	0.00	0.00	3.71	0.00	0.00	0.00	0.93	0.00	0.00	3.76	0.00	0.00	8.10	1.93	0.00	0.00	0.00	0.00	2.15	0.00	2.20	0.00
25	ER4a	ExonRegion	0	13.32	5.47	10.32	9.28	15.15	8.88	7.56	2.75	4.05	5.58	3.06	1.93	2.66	19.79	9.80	8.50	10.18	16.13	3.00	9.00	11.32	6.35	4.76	15.93	8.72	2.38	4.12	8.40	8.19
26	E4_Da	NovelBoundary	0	5.78	0.00	0.00	8.20	0.00	0.00	0.00	5.08	0.00	13.02	0.00	2.95	0.00	4.65	0.00	0.00	18.23	0.00	0.00	0.00	3.61	2.48	9.85	15.07	0.00	0.00	2.09	8.99	6.67
27	E4a_E5a	KnownJunction	0	0.00	0.00	5.71	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E4a_E6a	NovelJunction	0	5.54	0.00	2.99	0.00	14.74	0.00	2.29	0.00	1.52	0.00	1.42	0.00	0.00	3.06	0.00	0.00	0.95	0.00	0.00	0.00	2.05	2.48	0.00	3.05	0.00	0.00	0.00	0.00	0.00
29	E4a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	17.74	0.00	0.00
30	I4_AR1	ActiveIntronRegion	0	2.49	0.00	1.20	0.00	0.00	0.49	0.60	0.28	0.30	0.97	0.52	0.83	0.26	0.84	1.24	1.14	1.44	4.17	1.29	0.00	2.61	0.97	0.00	0.87	0.38	0.63	0.00	2.74	1.35
31	I4_SR2	SilentIntronRegion	0	3.12	1.74	1.41	6.08	1.05	2.09	0.76	0.40	5.17	2.88	1.16	3.70	0.59	2.47	2.07	1.55	2.73	2.54	0.86	1.34	5.42	0.19	0.97	1.86	1.13	0.34	0.39	3.08	0.90
32	I4_AR2	ActiveIntronRegion	0	2.66	0.92	5.01	4.31	1.87	2.24	1.54	1.41	6.37	4.34	0.34	5.42	0.68	2.18	2.29	3.36	4.64	3.59	1.22	0.19	5.12	0.86	0.17	2.26	1.14	0.75	1.57	3.12	1.02
33	I4_SR3	SilentIntronRegion	0	3.89	2.44	7.06	1.79	0.00	2.23	1.44	2.27	6.53	2.28	1.92	6.87	0.41	1.03	5.85	2.41	1.64	3.18	2.44	0.24	2.64	1.04	0.75	1.29	0.96	1.21	0.47	2.81	0.23
34	I4_AR3	ActiveIntronRegion	0	3.61	0.21	6.08	2.38	0.00	1.59	1.54	0.91	5.73	1.71	0.87	3.62	1.08	1.67	4.47	0.91	2.47	1.98	1.68	1.26	1.79	1.33	0.85	1.55	1.60	0.41	0.00	3.36	1.00
35	I4_AR4	ActiveIntronRegion	0	0.94	0.47	0.97	0.00	0.71	1.40	0.00	0.80	2.86	0.84	0.00	0.36	0.00	0.40	0.80	0.72	1.96	0.56	0.00	0.80	1.25	0.00	0.00	0.31	0.21	0.00	0.00	0.95	0.00
36	I4_AR5	ActiveIntronRegion	0	2.60	0.00	0.61	1.74	1.77	0.50	0.00	0.00	2.28	1.88	0.00	0.22	0.23	0.88	2.90	1.42	3.80	0.23	0.39	1.34	0.86	0.00	0.22	2.87	0.87	0.00	2.44	2.76	1.05
37	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	9.27	6.48	1.50	0.00	0.00	4.81	0.00	0.00	0.00	1.27	4.08	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00
38	ER5a	ExonRegion	0	2.96	8.66	3.80	3.83	2.56	3.93	11.45	1.76	0.83	0.72	0.00	0.00	0.35	3.81	2.62	1.18	2.62	0.26	0.55	3.86	1.93	3.40	1.94	7.82	2.60	1.50	3.56	4.13	0.64
39	E5_Da	NovelBoundary	0	0.00	0.00	2.99	0.00	7.07	0.00	2.92	4.98	1.31	2.04	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E5a_E6a	KnownJunction	0	0.00	8.05	2.72	0.00	0.00	8.59	15.33	0.00	3.08	0.00	0.00	0.00	1.91	5.52	0.00	0.00	2.30	4.62	0.00	7.94	1.89	4.76	1.92	2.99	1.52	0.00	0.00	2.16	0.00
41	I5	Intron	0	1.15	1.65	1.00	1.68	0.62	0.82	0.31	0.27	3.48	2.35	0.35	1.30	0.55	0.84	1.69	1.34	4.72	1.85	10.75	0.46	5.07	1.18	0.38	8.47	1.23	0.68	0.34	4.12	6.47
42	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.49	0.44	1.67	0.94	0.69	0.00	1.07	1.46	0.38	0.42	0.00	0.00	0.00	1.51	5.11	1.26	3.43	0.00	2.58	0.76	1.24	9.47	0.98	0.00	0.00	0.16	5.05
43	I5_SR2	SilentIntronRegion	0	0.80	1.32	1.01	0.00	0.42	0.59	0.00	0.27	3.43	1.73	0.10	0.58	0.17	0.46	4.34	1.83	2.47	0.66	15.47	0.74	3.34	0.10	0.00	7.50	1.61	0.39	0.31	3.78	6.95
44	I5_AR2	ActiveIntronRegion	0	1.17	5.04	1.37	0.00	1.73	1.38	1.83	1.58	6.55	3.73	0.77	2.90	1.77	0.59	2.78	2.43	5.06	3.39	41.27	2.79	5.62	2.21	0.43	29.12	2.68	0.58	0.22	9.69	9.33
45	I5_AR3	ActiveIntronRegion	0	0.00	8.21	0.00	0.00	0.00	1.32	1.24	0.00	6.87	3.11	1.10	2.28	2.60	1.47	11.20	0.00	7.24	4.62	46.30	0.00	3.24	1.11	0.00	25.65	1.43	0.00	0.00	1.82	11.77
46	I5_AR4	ActiveIntronRegion	0	0.00	2.39	0.00	0.00	0.00	0.00	0.00	0.00	4.03	2.10	0.00	0.06	2.48	2.72	3.31	0.00	6.42	0.00	8.85	0.00	2.85	1.80	0.00	15.94	1.43	0.00	0.00	0.89	15.62
47	I5_AR5	ActiveIntronRegion	0	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	3.37	1.44	0.00	0.00	0.00	2.72	0.00	0.00	6.58	0.00	0.00	0.00	2.24	1.80	0.00	10.76	0.20	0.00	0.00	1.63	12.65
48	I5_SR3	SilentIntronRegion	0	0.41	1.07	0.64	2.75	0.00	2.27	0.96	0.00	3.13	1.70	0.46	1.44	0.83	1.02	3.01	1.16	5.74	2.59	53.29	0.53	4.58	1.06	0.00	33.13	1.92	0.47	0.70	12.61	8.75
49	I5_AR6	ActiveIntronRegion	0	0.34	2.18	0.27	0.00	0.78	0.31	0.16	0.00	3.37	1.15	0.38	2.15	1.17	0.79	5.27	0.40	5.68	0.61	1.02	0.00	1.86	1.15	0.58	8.86	1.59	0.36	0.00	2.93	7.11
50	I5_SR4	SilentIntronRegion	0	1.45	1.43	1.11	2.17	0.61	0.83	0.19	0.21	3.56	2.63	0.36	1.30	0.45	0.96	1.13	1.37	5.19	2.07	6.06	0.31	6.03	1.30	0.45	5.71	1.13	0.85	0.32	3.75	6.56
51	I5	Intron	0	1.46	2.50	1.14	6.33	1.66	1.49	0.82	0.25	8.60	4.51	0.97	2.93	0.53	2.43	2.24	2.86	10.85	5.52	0.65	1.12	11.04	1.47	0.49	8.33	2.52	0.85	0.12	2.44	9.34
52	I5_SR1	SilentIntronRegion	0	1.46	2.50	1.14	6.33	1.66	1.49	0.82	0.25	8.60	4.51	0.97	2.93	0.53	2.43	2.24	2.86	10.85	5.52	0.65	1.12	11.04	1.47	0.49	8.33	2.52	0.85	0.12	2.44	9.34
53	E6_Aa	NovelBoundary	0	0.00	0.00	3.81	0.00	6.04	0.00	0.00	0.00	12.58	0.00	0.00	1.87	0.00	4.19	0.00	3.52	9.09	0.00	0.00	0.00	3.89	2.38	1.97	2.63	4.93	0.00	6.41	0.00	8.45
54	ER6a	ExonRegion	1	19.99	21.19	10.17	16.02	43.21	16.09	124.12	4.72	18.51	10.84	10.67	14.04	3.27	26.58	20.83	17.26	22.51	27.02	8.80	10.58	14.65	26.13	30.17	38.21	19.42	7.29	27.10	33.04	16.33
55	E6_Da	NovelBoundary	0	5.72	8.24	12.01	0.00	0.00	5.79	2.80	4.68	20.65	7.59	1.52	19.40	6.56	7.89	0.00	14.23	30.55	0.00	0.00	0.00	7.98	0.00	2.51	0.00	3.71	0.00	0.00	6.87	4.89
56	E6a_E7a	KnownJunction	0	19.52	30.93	18.26	0.00	56.00	10.55	16.82	7.37	12.03	19.77	13.51	4.52	5.10	31.42	26.11	24.02	31.31	14.51	24.28	11.25	11.19	29.80	46.20	33.62	30.50	17.81	27.68	19.99	15.22
57	Ix	Intron	0	1.85	2.55	1.84	3.99	1.81	2.27	1.41	0.68	8.97	5.86	1.13	2.87	0.88	4.29	3.55	5.30	7.30	1.95	1.81	1.00	8.46	2.38	1.46	6.01	3.31	0.96	1.34	3.84	6.43
58	Ix_SR1	SilentIntronRegion	0	1.40	2.43	1.55	3.13	1.41	1.67	0.78	0.62	10.09	5.28	1.12	3.13	0.76	2.65	3.48	4.55	8.85	1.99	2.03	0.61	9.83	2.68	1.47	6.87	2.94	1.02	1.10	3.88	9.38
59	Ix_AR3	ActiveIntronRegion	0	4.21	5.52	4.93	9.78	3.20	4.65	3.85	1.91	13.54	11.50	1.88	4.81	1.98	10.76	4.71	12.24	10.83	3.36	3.31	2.66	13.85	5.41	2.76	9.85	7.72	2.06	3.20	5.60	6.31
60	E7_Aa	NovelBoundary	0	5.60	13.77	2.77	0.00	7.37	3.49	0.00	2.19	7.55	9.67	0.00	11.02	1.72	2.15	0.00	13.08	19.99	0.00	8.09	4.05	10.91	1.90	0.00	15.01	3.18	0.00	0.00	2.07	6.01
61	ER7a	ExonRegion	0	21.22	21.11	20.04	25.97	35.96	20.21	13.45	11.82	36.54	24.82	16.60	13.11	7.99	33.71	28.50	32.25	41.80	14.44	13.27	12.91	20.45	30.71	43.08	52.17	31.63	12.46	28.42	14.32	17.85