Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	R3HCC1	Gene	0	114.16	61.05	123.72	117.08	143.71	68.34	93.75	266.89	67.44	73.45	46.27	82.78	54.03	98.55	72.45	96.40	120.86	100.78	90.49	188.33	69.93	187.79	114.88	128.02	69.35	73.59	57.23	131.20	101.21
2	411463	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.13	2.35	0.15	0.19	0.00	0.00	0.00	0.00	0.00	0.34	0.07	0.00	0.00	0.00	0.10	1.08	0.00	0.00	0.19	0.00	0.00	0.00	0.09
3	265806	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	E1_Da	NovelBoundary	0	0.00	0.00	1.49	0.00	0.00	3.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	24.91	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	I1	Intron	0	2.58	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	0.52	0.00	0.00	0.00	0.60	0.00	2.57	0.00	1.15	0.00	0.00	0.00	0.00	2.52	0.00	2.62	0.00
8	I1_AR1	ActiveIntronRegion	0	2.62	0.00	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.00	0.00	0.61	0.00	2.61	0.00	1.16	0.00	0.00	0.00	0.00	2.56	0.00	2.66	0.00
9	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	1.93	0.00	2.14	0.00	0.00
10	E2_Ab	NovelBoundary	0	0.00	4.56	0.00	9.27	0.00	0.00	0.00	4.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	1.99	0.00	0.00	0.00	2.06	0.00	2.29	0.00
11	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.40	7.00	0.45	0.58	0.00	0.00	0.00	0.00	0.00	1.01	0.20	0.00	0.00	0.00	0.29	3.24	0.00	0.00	0.57	0.00	0.00	0.00	0.27
12	ER2b	ExonRegion	0	55.51	18.41	58.37	240.18	186.21	30.41	42.50	174.84	26.69	35.60	23.08	40.86	24.88	38.27	21.92	94.86	47.70	51.57	28.64	88.78	42.62	235.23	79.38	43.43	29.84	44.55	39.57	72.90	52.99
13	E2_Da	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	3.97	0.00	0.00	0.00	0.00	0.00	1.76	0.00	6.07	0.00
14	E2a_E3a	KnownJunction	0	139.91	42.27	157.61	585.60	381.84	65.53	84.33	255.10	62.28	65.95	54.00	80.39	50.28	96.07	43.05	198.90	124.72	56.89	8.09	186.90	106.69	467.41	171.59	101.21	46.67	85.87	95.57	178.78	122.38
15	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.93	0.00	0.00	0.00	0.00	0.00
16	I2	Intron	0	3.46	0.00	0.49	1.05	0.00	0.60	0.00	0.00	0.33	0.00	0.00	0.00	0.38	0.66	0.68	0.36	0.22	1.69	3.75	1.21	0.42	0.53	0.00	0.32	0.42	1.84	0.54	6.93	0.88
17	I2_AR1	ActiveIntronRegion	0	1.89	0.00	0.00	3.97	0.00	0.07	0.00	0.00	0.40	0.00	0.00	0.00	0.64	0.23	0.00	0.00	0.00	2.31	1.97	1.53	0.08	1.00	0.00	0.00	0.71	2.36	0.00	9.02	2.22
18	I2_SR2	SilentIntronRegion	0	4.32	0.00	0.74	0.00	0.00	0.89	0.00	0.00	0.25	0.00	0.00	0.00	0.28	0.92	1.03	0.55	0.33	1.64	4.90	1.23	0.60	0.40	0.00	0.48	0.32	1.68	0.82	6.56	0.45
19	E3_Aa	NovelBoundary	1	5.96	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.99	0.00	3.29	0.00	0.00	0.00	4.13	0.00	0.00	0.00	3.05	0.00	3.69	0.00	12.67	1.32
20	ER3a	ExonRegion	0	56.90	27.61	59.15	135.86	67.37	47.51	43.37	149.76	28.97	35.07	13.94	41.78	22.35	49.80	35.05	39.54	59.77	29.89	36.84	89.74	45.92	179.60	48.74	70.60	26.79	33.54	43.13	71.91	52.84
21	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	3.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3a_E4a	KnownJunction	1	157.26	38.49	11.26	85.41	14.74	53.91	58.76	473.32	43.36	37.43	11.89	37.77	18.25	99.31	36.08	37.10	43.08	28.25	56.65	251.16	65.82	643.98	34.28	150.44	54.21	30.08	31.36	10.06	59.99
23	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.60	0.00	0.00
24	ER4a	ExonRegion	0	124.00	59.10	41.44	51.77	44.87	80.06	90.72	225.92	43.99	67.07	49.65	64.74	47.59	92.05	56.25	113.66	111.99	98.86	90.16	209.70	87.17	189.80	109.88	129.63	64.29	70.62	59.51	109.52	97.80
25	E4_Da	NovelBoundary	1	2.60	0.00	0.00	0.00	0.00	1.96	0.00	1.89	3.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.95	7.36	14.60	0.00
26	E4a_E5a	KnownJunction	0	99.15	29.18	100.83	79.59	131.75	51.14	107.45	198.22	26.40	50.93	37.33	85.48	30.67	64.63	31.69	40.93	137.98	74.87	48.55	162.09	48.65	170.40	94.51	96.60	37.89	55.19	42.89	125.04	69.30
27	I4	Intron	0	3.77	0.00	0.27	1.15	0.00	0.88	0.00	0.00	0.27	0.00	0.00	0.00	0.00	0.58	3.23	0.40	0.24	0.62	1.53	0.00	0.00	0.00	0.29	0.00	0.46	2.76	1.17	4.17	0.00
28	I4_SR1	SilentIntronRegion	0	3.79	0.00	0.27	1.15	0.00	0.88	0.00	0.00	0.27	0.00	0.00	0.00	0.00	0.58	3.25	0.40	0.24	0.62	1.54	0.00	0.00	0.00	0.29	0.00	0.46	2.78	1.18	4.20	0.00
29	E5_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	2.22	0.00	0.00	2.19	0.00	1.93	0.00
30	ER5a	ExonRegion	0	140.46	63.23	158.23	147.33	146.44	70.23	105.89	310.90	60.67	78.96	56.95	105.77	62.31	122.18	62.09	110.51	147.67	120.00	107.04	231.28	75.79	196.13	138.55	148.35	77.24	76.65	62.88	148.58	106.56
31	E5_Da	NovelBoundary	0	3.01	0.00	1.05	9.27	0.00	8.98	2.57	0.00	0.00	1.76	1.33	0.00	0.00	2.04	0.00	0.00	1.89	4.62	8.09	3.39	7.62	0.00	2.27	8.55	0.00	5.41	0.00	8.31	5.38
32	E5a_E6a	KnownJunction	0	190.41	119.25	204.90	160.04	305.50	114.83	131.14	461.73	110.85	146.48	98.00	170.00	116.23	170.56	134.74	135.63	200.08	160.54	121.39	321.20	87.08	333.42	195.18	257.27	117.75	126.55	87.57	229.64	181.51
33	I5	Intron	0	4.12	2.17	0.96	0.69	1.88	3.70	1.16	1.06	1.99	0.97	0.34	1.18	0.81	1.52	3.44	2.55	5.59	4.66	4.30	0.79	1.23	0.00	0.69	0.41	0.41	3.17	2.64	7.05	0.64
34	I5_SR1	SilentIntronRegion	0	4.14	2.18	0.97	0.69	1.89	3.72	1.17	1.07	2.00	0.98	0.34	1.19	0.82	1.53	3.46	2.56	5.63	4.68	4.32	0.80	1.24	0.00	0.70	0.42	0.41	3.19	2.65	7.09	0.65
35	E6_Aa	NovelBoundary	1	2.30	4.85	0.00	0.00	0.00	1.65	0.00	0.00	3.11	0.00	0.00	1.72	0.00	0.84	0.00	3.67	11.43	4.62	0.00	0.00	4.09	0.00	0.00	10.65	0.00	2.02	0.00	16.76	0.00
36	ER6a	ExonRegion	0	153.98	103.88	200.15	154.16	284.50	122.00	142.65	450.88	119.31	122.63	81.12	146.85	84.63	163.28	131.02	139.97	209.46	142.22	162.83	261.59	92.01	289.92	192.44	215.41	131.26	128.31	102.60	238.14	171.30
37	E6_Da	NovelBoundary	0	9.02	4.27	2.84	0.00	0.00	3.45	2.46	1.99	4.66	1.56	0.00	2.59	2.83	4.17	0.00	0.00	10.02	0.00	0.00	0.00	3.69	4.18	2.12	2.99	0.00	7.81	0.00	14.47	0.00
38	E6a_E7a	KnownJunction	0	124.11	107.03	242.55	105.90	274.85	130.07	150.19	379.96	136.67	149.24	71.30	144.03	102.38	158.40	157.66	146.57	209.63	89.39	145.44	239.33	91.77	242.02	169.81	287.35	132.71	85.31	98.45	194.51	172.23
39	E6a_E8a	NovelJunction	0	0.00	0.00	1.54	0.00	0.00	3.91	0.00	0.00	4.96	3.83	0.00	1.51	0.00	1.00	0.00	0.00	1.40	0.00	0.00	0.00	1.76	2.33	2.41	0.00	0.00	0.00	0.00	3.95	2.05
40	I6	Intron	0	5.99	1.95	1.51	0.59	1.81	2.43	0.50	2.19	1.75	1.31	0.68	1.55	0.11	2.53	1.28	1.70	5.40	4.09	5.78	2.06	1.47	0.96	0.82	3.62	1.00	3.94	1.96	5.63	0.99
41	I6_AR1	ActiveIntronRegion	0	7.59	3.66	2.00	1.52	4.66	3.88	1.28	3.29	2.57	1.37	1.01	2.26	0.28	2.45	1.32	2.47	5.97	4.22	7.01	3.42	1.50	2.29	1.15	3.09	1.46	5.50	2.87	8.13	0.85
42	I6_SR1	SilentIntronRegion	0	4.99	0.87	1.20	0.00	0.00	1.51	0.00	1.51	1.23	1.27	0.48	1.10	0.00	2.59	1.26	1.22	5.05	4.02	5.01	1.19	1.45	0.12	0.61	3.97	0.71	2.96	1.38	4.05	1.08
43	E7_Aa	NovelBoundary	0	2.36	0.00	4.81	0.00	0.00	0.00	0.00	0.00	2.38	0.00	2.78	4.49	0.00	3.12	0.00	7.34	4.25	0.00	0.00	0.00	1.72	0.00	1.97	7.78	1.63	4.29	4.27	4.00	1.98
44	ER7a	ExonRegion	0	138.87	84.53	203.90	81.98	233.43	114.93	143.60	396.30	118.03	125.51	82.12	125.13	98.05	130.27	145.46	147.35	195.96	160.87	145.97	209.45	94.28	250.99	159.05	193.03	105.77	116.43	76.67	243.04	161.50
45	E7_Da	NovelBoundary	0	2.48	0.00	1.54	10.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	3.29	6.51	4.62	0.00	0.00	0.00	0.00	0.00	0.00	1.93	2.19	0.00	1.98	0.00
46	E7a_E8a	KnownJunction	0	106.35	99.76	130.28	59.53	217.52	82.22	160.03	347.61	130.98	100.22	58.94	98.40	79.96	92.99	102.65	138.23	198.69	189.43	226.59	201.54	101.16	168.41	134.25	128.60	81.19	108.49	54.52	250.63	142.32
47	I7	Intron	0	4.82	0.99	1.23	0.99	0.45	2.33	0.37	0.93	1.93	0.93	0.16	0.91	0.30	1.89	2.54	2.21	4.11	3.49	2.93	1.99	0.79	0.00	0.42	2.07	0.52	3.82	2.35	7.26	0.77
48	I7_SR1	SilentIntronRegion	0	4.83	1.21	1.45	1.20	0.00	2.20	0.34	1.01	2.19	0.81	0.13	0.93	0.32	2.04	2.84	2.42	4.63	3.34	2.68	2.27	0.96	0.00	0.40	1.81	0.64	3.87	2.49	7.05	0.86
49	I7_AR1	ActiveIntronRegion	0	8.73	0.00	0.62	0.00	0.00	3.87	0.09	0.32	1.64	3.45	0.00	0.05	0.55	1.52	1.95	0.00	2.45	4.71	3.48	0.00	0.00	0.00	1.34	6.27	0.06	2.96	3.50	3.54	0.00
50	I7_AR2	ActiveIntronRegion	0	2.70	0.00	0.00	0.00	3.89	2.47	0.74	0.73	0.31	0.41	0.47	1.19	0.00	1.08	0.74	1.98	1.35	3.94	4.42	1.10	0.00	0.00	0.00	1.71	0.00	3.99	0.82	10.84	0.53
51	E8_Aa	NovelBoundary	0	19.64	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.55	0.00	0.00	0.00	1.59	4.90	0.00	0.00	6.39	0.00	0.00	0.00	0.00	0.00	0.00	2.69	0.00	1.72	0.00	8.09	7.66
52	ER8a	ExonRegion	0	131.22	102.21	124.80	81.58	150.43	95.97	152.38	354.24	118.12	111.19	53.41	95.02	72.73	114.34	153.84	112.80	143.34	131.65	113.52	235.39	92.54	193.33	161.27	154.37	104.85	121.16	78.81	190.53	165.21
53	E8_Da	NovelBoundary	0	9.02	0.00	0.00	38.82	0.00	1.42	5.55	0.00	0.00	1.76	0.00	6.20	1.85	3.74	0.00	3.52	28.79	18.49	16.18	0.00	6.02	0.00	2.46	8.49	3.22	2.02	0.00	9.03	0.00
54	E8a_E9a	KnownJunction	0	152.83	103.74	90.91	92.75	118.49	116.33	142.58	350.10	167.73	104.42	44.16	78.16	72.03	98.26	115.01	90.88	104.42	153.86	96.88	266.13	132.97	219.90	121.50	170.47	90.32	108.14	57.35	132.05	193.26
55	I8	Intron	0	11.11	3.11	3.49	3.64	2.48	4.26	2.61	5.91	4.96	3.66	1.41	2.88	0.80	6.68	7.97	7.25	15.06	5.72	7.74	4.06	3.13	2.44	1.94	6.67	2.42	3.90	2.89	8.36	2.00
56	I8_AR1	ActiveIntronRegion	0	11.14	3.12	3.49	3.64	2.48	4.27	2.62	5.93	4.97	3.67	1.41	2.89	0.81	6.70	7.99	7.27	15.09	5.73	7.76	4.07	3.14	2.44	1.94	6.68	2.42	3.91	2.90	8.38	2.01
57	E9_Aa	NovelBoundary	0	5.37	0.00	2.27	0.00	0.00	1.46	0.00	10.90	5.66	0.00	0.00	1.36	0.00	2.92	15.55	9.79	13.30	0.00	16.18	0.00	0.00	4.42	0.00	5.80	1.52	0.00	0.00	6.29	1.45
58	ER9a	ExonRegion	0	76.45	46.18	88.43	71.67	125.26	35.88	58.51	144.15	67.89	48.02	18.52	33.61	34.14	52.83	60.48	57.85	55.44	70.71	45.07	121.32	50.99	119.02	53.88	73.95	37.37	46.46	26.21	57.80	63.19
59	IG26	Intergenic	0	5.84	1.59	1.66	2.99	2.44	3.07	1.50	1.98	0.79	1.67	2.36	1.63	0.96	1.46	2.36	5.76	3.71	2.25	2.37	5.48	0.82	3.27	2.84	3.73	1.30	2.86	2.44	4.84	2.65
60	IG26_SR1	SilentIntergenicRegion	0	9.84	0.00	1.67	3.26	2.22	2.72	0.92	3.25	0.74	3.47	2.13	2.97	0.00	0.64	0.00	6.82	7.07	1.78	2.38	4.97	1.63	2.78	2.53	2.96	1.10	4.25	2.50	7.95	1.08
61	IG26_AR1	ActiveIntergenicRegion	0	6.81	2.80	2.38	3.12	2.83	4.11	1.46	1.90	0.97	1.83	3.44	1.74	1.69	2.22	4.14	6.46	3.37	2.55	2.46	7.22	0.72	4.34	3.65	5.59	1.72	3.43	2.92	5.74	3.43