Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC004079.4	Gene	0	81.14	47.34	26.87	65.61	20.56	28.23	95.36	19.85	33.73	29.34	13.70	57.89	14.88	87.43	148.20	197.70	136.43	26.76	61.22	26.93	17.83	11.16	6.37	67.56	56.25	27.15	21.72	30.54	25.21
2	434063	Transcript	0	49.35	33.63	5.06	19.30	10.40	23.32	24.76	21.93	24.01	21.78	16.60	46.04	11.95	29.58	131.52	103.35	63.93	26.79	25.17	22.21	14.99	14.34	9.88	48.06	31.68	32.22	25.64	37.21	36.40
3	429611	Transcript	0	2.65	0.00	0.00	0.00	0.00	0.00	5.84	0.00	0.00	0.00	0.00	0.00	1.43	5.16	0.00	2.98	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
4	425358	Transcript	1	25.25	0.00	1.54	40.12	7.37	0.00	127.42	2.54	3.11	6.11	0.00	9.28	10.60	52.44	36.48	77.42	8.17	0.00	64.74	0.00	0.00	2.48	2.51	0.00	0.00	6.14	0.00	4.00	0.00
5	428939	Transcript	0	58.42	37.65	32.12	41.12	15.05	27.03	26.30	18.27	24.20	25.01	6.22	48.26	7.55	62.68	92.88	141.94	152.02	26.30	17.53	17.60	19.29	3.12	2.74	58.35	67.69	19.26	9.97	21.02	11.74
6	ER1a	ExonRegion	0	8.35	0.17	1.42	5.39	18.88	3.69	5.73	0.68	1.12	4.86	2.19	3.25	3.35	2.10	3.83	14.39	7.80	8.47	0.00	10.06	0.98	5.12	1.71	4.64	1.43	2.15	1.35	6.86	4.31
7	ER1b	ExonRegion	0	50.20	8.65	33.52	79.84	23.86	11.85	39.95	9.12	6.41	17.40	6.67	24.20	7.77	19.43	77.07	108.80	44.58	28.74	14.66	22.46	4.36	15.03	7.48	11.43	7.53	25.28	8.00	29.15	30.61
8	E1_Ac	KnownBoundary	0	42.06	3.68	37.60	49.61	5.60	7.17	29.64	6.82	6.58	1.80	5.63	35.69	8.66	15.29	50.23	62.27	18.07	9.25	8.09	11.58	1.72	5.74	8.37	8.25	4.89	23.09	5.76	20.71	17.30
9	ER1c	ExonRegion	0	70.32	14.90	16.29	25.29	10.48	16.10	54.85	15.99	10.11	20.73	9.57	34.14	12.54	27.77	81.84	114.86	42.47	23.65	19.36	32.22	9.70	19.10	8.01	22.09	16.78	27.34	13.55	23.43	23.94
10	E1_Da	NovelBoundary	0	26.54	12.51	3.69	0.00	0.00	5.83	5.84	2.34	1.43	12.86	0.00	9.70	0.00	20.43	62.19	34.04	53.86	23.12	0.00	15.38	7.74	4.86	2.51	8.25	25.65	3.95	0.00	8.18	1.65
11	E1a_E2b	KnownJunction	1	25.25	0.00	1.54	40.12	7.37	0.00	127.42	2.54	3.11	6.11	0.00	9.28	10.60	52.44	36.48	77.42	8.17	0.00	64.74	0.00	0.00	2.48	2.51	0.00	0.00	6.14	0.00	4.00	0.00
12	E1a_E2c	KnownJunction	0	2.65	0.00	0.00	0.00	0.00	0.00	5.84	0.00	0.00	0.00	0.00	0.00	1.43	5.16	0.00	2.98	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
13	E1a_E3a	KnownJunction	1	66.12	27.53	5.41	29.55	0.00	33.34	10.93	45.59	22.29	25.25	26.86	78.13	15.73	8.73	172.61	89.04	68.79	46.23	0.00	30.27	23.87	24.41	20.04	40.79	32.39	81.88	43.39	74.14	80.88
14	I1	Intron	0	52.55	18.56	22.70	20.24	6.74	20.42	16.91	12.36	17.50	18.76	5.15	35.24	2.93	46.70	64.30	108.68	118.69	20.12	10.96	11.54	10.71	3.13	0.95	32.08	41.20	13.05	4.21	16.84	5.95
15	I1_AR1	ActiveIntronRegion	0	52.59	18.58	22.72	20.25	6.75	20.43	16.92	12.37	17.51	18.77	5.16	35.27	2.93	46.74	64.36	108.77	118.79	20.14	10.97	11.55	10.72	3.13	0.95	32.11	41.24	13.06	4.22	16.86	5.95
16	E2_Aa	NovelBoundary	0	67.54	51.09	30.65	48.10	0.00	46.08	55.61	29.96	49.76	38.43	11.01	58.16	5.00	70.37	176.40	195.22	150.32	23.89	56.65	15.30	19.81	4.81	4.88	81.29	68.91	15.11	0.00	7.91	11.98
17	ER2a	ExonRegion	0	58.42	37.65	32.12	41.12	15.05	27.03	26.30	18.27	24.20	25.01	6.22	48.26	7.55	62.68	92.88	141.94	152.02	26.30	17.53	17.60	19.29	3.12	2.74	58.35	67.69	19.26	9.97	21.02	11.74
18	E2_Ab	KnownBoundary	0	53.26	46.54	16.27	51.12	14.74	20.03	21.23	7.27	29.87	40.11	4.52	50.66	5.99	55.13	59.00	170.90	125.65	27.74	8.09	18.44	11.19	0.00	0.00	77.16	81.57	22.83	17.20	19.68	13.21
19	E2_Ac	KnownBoundary	1	58.99	31.70	32.12	82.39	14.74	12.09	202.71	0.00	32.95	32.36	3.23	50.60	15.03	92.02	146.70	174.03	159.37	19.26	80.70	12.16	3.73	6.90	4.28	42.77	51.26	26.82	9.54	23.72	9.18
20	ER2b	ExonRegion	1	79.22	48.73	35.39	95.37	22.83	19.42	197.80	6.75	39.88	46.20	5.06	69.32	16.67	125.55	111.31	243.27	197.38	21.61	77.50	19.21	8.62	4.58	2.71	70.90	82.13	31.83	15.11	27.17	12.86
21	ER2c	ExonRegion	0	80.66	32.39	29.63	68.76	15.16	19.75	146.57	19.21	36.67	22.96	4.26	51.63	18.61	118.86	108.07	203.67	188.05	22.85	64.56	13.89	8.37	8.54	3.37	45.57	51.40	22.88	2.27	21.67	12.78
22	E2_Da	KnownBoundary	0	112.19	46.83	36.00	89.51	26.23	36.33	172.39	31.10	73.79	43.62	15.91	70.12	18.15	128.24	223.04	291.00	268.51	18.49	89.02	18.86	6.82	7.44	0.00	59.70	99.45	31.84	9.99	38.64	19.35
23	ER2d	ExonRegion	1	115.10	38.67	27.49	101.17	21.25	21.70	240.56	19.95	53.31	30.23	12.03	61.15	21.89	165.36	143.20	245.34	194.56	21.06	90.68	14.23	8.89	9.56	3.92	63.73	79.09	37.37	17.16	28.04	19.52
24	E2_Db	NovelBoundary	0	46.72	46.92	30.47	37.31	0.00	10.51	11.61	13.69	50.34	17.58	10.82	35.42	1.91	67.80	105.04	118.27	119.84	13.87	24.28	17.20	9.06	0.00	0.00	83.26	56.79	16.31	6.16	21.52	6.40
25	E2b_E3a	KnownJunction	1	67.18	9.60	6.33	71.39	20.78	1.88	191.04	8.46	11.39	1.92	0.00	8.92	18.12	100.88	33.69	93.40	21.83	0.00	88.34	4.13	0.00	12.15	2.46	2.39	15.19	4.29	0.00	8.58	1.72
26	I2	Intron	0	32.56	48.29	12.02	31.12	6.62	21.26	12.85	4.99	37.02	17.62	9.85	51.61	3.33	44.45	113.16	147.44	108.73	13.98	14.30	13.62	13.74	3.18	0.49	56.61	38.19	9.81	6.71	13.49	8.26
27	I2_AR1	ActiveIntronRegion	0	32.74	48.54	12.08	31.28	6.66	21.37	12.91	5.02	37.22	17.72	9.90	51.89	3.35	44.69	113.76	148.22	109.30	14.05	14.38	13.69	13.81	3.20	0.49	56.90	38.40	9.86	6.74	13.56	8.30
28	E3_Aa	NovelBoundary	0	24.48	42.56	14.48	0.00	12.08	52.64	20.65	0.00	45.68	20.49	4.52	54.49	8.28	47.73	157.86	164.01	163.94	22.99	16.18	29.85	34.33	2.19	0.00	109.22	57.93	6.44	21.17	13.75	18.16
29	ER3a	ExonRegion	0	131.01	104.89	42.36	141.59	45.87	58.54	152.36	35.89	55.23	47.01	33.58	116.18	22.03	148.10	301.27	353.53	194.78	38.79	146.58	57.90	43.33	14.84	12.19	143.63	89.61	52.29	61.90	61.19	58.14
30	E3_Da	KnownBoundary	0	59.87	48.57	7.13	28.47	19.31	27.51	67.80	9.56	31.03	37.59	22.21	58.76	14.84	56.70	142.31	215.57	88.48	14.64	48.55	10.42	29.72	9.38	9.46	59.82	56.11	7.77	46.96	17.75	27.63
31	E3_Db	KnownBoundary	0	50.96	64.18	5.33	42.28	7.37	27.36	38.39	7.61	21.01	38.59	27.05	34.34	1.34	47.99	94.08	164.24	74.17	14.64	32.37	37.13	17.57	4.42	4.04	92.41	43.76	5.54	13.72	14.65	14.23
32	ER3b	ExonRegion	0	96.65	76.75	10.10	47.20	17.66	42.49	82.28	16.07	41.16	54.08	40.90	82.65	15.94	86.33	193.48	294.02	147.07	29.03	90.93	37.31	36.83	10.82	10.03	117.73	81.86	9.29	45.62	24.15	34.16
33	ER3c	ExonRegion	0	73.59	73.18	8.35	22.97	12.33	32.94	57.61	19.52	48.61	35.24	20.75	56.72	16.77	77.92	218.11	206.63	115.19	25.67	75.51	26.31	20.13	13.50	7.89	98.75	61.23	12.63	32.18	30.63	24.01
34	IG45	Intergenic	0	11.91	7.90	0.84	23.53	11.10	6.25	9.16	0.93	9.49	6.93	3.91	8.88	2.78	12.23	53.93	44.33	19.60	9.24	14.52	8.85	4.68	4.55	1.83	23.35	12.63	3.57	12.49	11.12	5.24
35	IG45_AR1	ActiveIntergenicRegion	0	12.02	7.98	0.85	23.77	11.21	6.31	9.25	0.94	9.58	7.00	3.95	8.96	2.81	12.34	54.47	44.77	19.79	9.32	14.60	8.94	4.73	4.60	1.84	23.59	12.75	3.61	12.61	11.22	5.29