Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF316	Gene	0	28.16	31.44	38.21	7.58	4.32	49.42	4.75	9.52	30.47	36.48	15.91	52.38	26.52	62.27	39.51	47.48	81.57	97.90	17.06	11.80	29.72	26.57	35.90	59.48	35.76	64.31	16.59	97.89	30.42
2	427912	Transcript	0	15.43	24.66	14.69	3.10	2.37	32.51	3.06	9.10	14.27	22.86	10.93	24.52	10.08	24.19	11.00	14.73	36.10	46.48	9.63	6.05	18.08	11.19	18.47	36.43	25.39	38.75	6.30	61.18	10.61
3	382252	Transcript	0	20.00	14.35	18.68	2.62	1.25	31.12	3.56	3.81	17.75	17.95	3.37	35.01	17.73	41.04	32.64	33.63	54.96	77.60	9.69	8.16	18.49	19.45	22.43	30.76	18.18	45.16	4.88	72.06	20.35
4	IG29_SR1	SilentIntergenicRegion	0	0.00	1.77	1.90	0.00	0.00	5.39	0.00	3.40	1.47	8.44	0.00	14.75	0.40	3.70	6.89	0.00	4.62	3.57	1.74	0.00	1.21	2.08	2.09	15.72	3.08	13.42	0.00	0.25	2.37
5	IG29_AR1	ActiveIntergenicRegion	0	3.22	9.27	7.16	1.24	0.85	20.84	3.15	2.05	10.60	35.27	6.20	44.89	3.95	12.42	3.20	8.68	10.63	10.91	6.73	1.88	4.98	14.33	6.89	40.39	9.20	12.63	4.40	2.73	18.70
6	ER1a	ExonRegion	0	1.74	3.91	3.21	0.00	3.95	13.42	0.00	0.75	2.27	2.02	0.48	2.37	1.14	1.28	2.13	4.94	2.47	3.18	1.29	0.00	9.81	3.08	2.35	1.64	0.00	14.38	0.00	23.76	1.63
7	E1a_E2a	KnownJunction	0	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.39	0.00	0.00	0.00	3.06	0.97	0.00	0.00	0.00	0.00	0.00	0.00	2.39	0.00	2.10	0.00	4.45	0.00
8	I1_AR1	ActiveIntronRegion	0	0.00	0.00	0.23	0.00	0.00	1.78	0.00	0.00	0.00	0.18	0.00	0.00	1.03	0.70	2.80	3.90	1.31	3.24	3.96	0.00	1.66	0.00	0.68	0.00	0.00	0.69	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	0.00	4.46	3.44	0.00	0.00	3.80	0.00	0.00	4.66	0.00	2.66	2.32	0.00	4.14	9.97	3.60	4.14	0.00	0.00	0.00	1.60	0.00	0.00	0.00	1.86	4.16	0.00	3.59	0.00
10	ER2a	ExonRegion	0	5.02	21.09	5.73	0.00	0.00	36.93	1.49	4.59	13.89	14.25	5.10	15.38	4.59	14.81	8.44	18.70	20.83	31.42	9.63	8.26	27.14	8.91	13.53	23.28	11.65	18.19	7.61	30.12	9.32
11	E2_Da	NovelBoundary	0	2.77	4.85	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	3.44	0.00	4.62	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	0	7.96	9.21	9.29	0.00	0.00	17.38	5.61	13.44	18.79	14.10	7.88	29.01	13.57	25.92	8.17	0.00	44.66	23.12	8.09	0.00	15.00	8.80	15.51	11.54	15.84	33.77	2.44	62.90	2.01
13	E2a_E4a	NovelJunction	0	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	1.09	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I2	Intron	0	2.76	1.89	1.57	0.00	0.00	3.79	0.47	0.54	1.05	1.52	0.98	1.41	0.42	3.53	0.54	3.18	4.99	5.23	1.87	1.45	2.34	0.00	0.21	1.13	1.09	1.29	0.00	2.96	0.55
15	I2_AR1	ActiveIntronRegion	0	2.03	1.31	1.36	0.00	0.00	1.30	0.55	0.00	1.01	0.84	0.72	0.33	0.18	1.95	1.25	2.26	2.50	4.98	0.86	1.49	1.74	0.00	0.00	0.00	1.33	0.89	0.00	2.40	0.36
16	I2_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	1.44	3.57	0.00	0.00	3.02	0.00	0.00	6.85	5.46	0.00	0.00	0.00	0.00	0.00	0.00	0.95	1.57	0.00	5.43	0.00
17	I2_SR1	SilentIntronRegion	0	3.39	2.38	1.76	0.00	0.00	5.79	0.42	0.97	1.09	2.06	1.14	2.27	0.61	4.78	0.00	3.96	6.93	5.45	2.69	1.45	2.85	0.00	0.38	2.04	0.90	1.60	0.00	3.38	0.70
18	E3_Aa	NovelBoundary	0	5.31	0.00	4.63	0.00	0.00	5.37	0.00	0.00	6.85	0.00	0.00	4.82	0.00	8.00	17.74	3.82	9.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.12	0.00	2.29	12.05
19	ER3a	ExonRegion	0	22.61	27.40	16.71	14.77	3.54	48.35	6.83	13.72	20.92	33.08	14.96	38.23	15.96	37.23	26.15	22.52	54.94	66.21	15.43	13.41	23.02	17.16	23.47	66.99	36.62	47.53	7.95	64.76	12.76
20	E3_Da	NovelBoundary	0	2.83	0.00	1.12	0.00	0.00	7.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.42	0.00	3.75	6.28	4.62	0.00	0.00	3.93	0.00	0.00	0.00	0.00	0.00	0.00	2.11	1.39
21	E3a_E4a	KnownJunction	0	29.61	13.28	26.53	0.00	7.37	72.94	0.00	22.25	21.86	40.15	11.61	42.56	10.51	42.50	9.97	23.33	73.29	107.62	24.28	14.89	33.97	11.18	31.86	74.47	34.59	42.10	11.18	51.94	12.84
22	I3	Intron	0	4.67	2.05	1.98	1.56	0.30	3.08	0.31	0.57	2.09	2.47	0.56	1.74	0.58	2.94	2.97	2.75	5.29	5.03	1.89	1.09	2.08	0.50	0.73	1.95	1.64	1.37	0.11	3.75	0.63
23	I3_SR1	SilentIntronRegion	0	4.67	2.05	1.98	1.56	0.30	3.08	0.31	0.57	2.09	2.47	0.56	1.75	0.58	2.94	2.97	2.75	5.30	5.04	1.89	1.09	2.09	0.51	0.73	1.95	1.65	1.37	0.11	3.76	0.63
24	E4_Aa	NovelBoundary	0	5.25	0.00	1.42	0.00	0.00	1.96	0.00	0.00	2.59	0.00	0.00	3.07	0.00	2.66	0.00	0.00	8.94	4.62	0.00	0.00	3.69	0.00	0.00	0.00	7.50	1.76	0.00	2.16	0.00
25	ER4a	ExonRegion	0	30.74	50.27	27.28	13.14	6.46	51.01	6.68	17.81	27.71	40.97	23.09	40.05	23.14	46.65	18.34	23.22	65.18	84.60	21.05	16.72	29.09	23.10	24.96	77.88	53.32	62.94	16.24	88.92	20.69
26	E4_Da	NovelBoundary	0	18.58	8.63	13.83	10.78	0.00	17.76	5.09	6.67	10.41	11.54	4.71	15.99	8.69	13.74	34.68	32.05	60.44	18.37	0.00	7.11	11.39	4.42	2.31	25.24	29.55	11.54	0.00	0.00	1.68
27	E4a_E5a	KnownJunction	0	19.17	46.73	19.18	0.00	0.00	28.74	2.29	6.12	10.66	28.96	19.74	20.84	10.70	24.84	15.55	16.52	30.23	46.23	0.00	0.00	11.19	15.65	22.21	32.06	42.36	71.02	6.91	112.96	19.38
28	I4	Intron	0	9.65	14.02	18.11	6.98	0.59	28.45	3.68	7.40	9.01	14.76	6.08	11.48	1.89	12.56	15.45	20.46	44.15	34.31	7.78	5.51	16.67	2.41	1.76	34.56	22.09	8.61	1.11	4.36	5.86
29	I4_AR1	ActiveIntronRegion	0	9.70	14.08	18.20	7.01	0.60	28.58	3.70	7.42	9.06	14.83	6.11	11.54	1.90	12.62	15.53	20.56	44.36	34.48	7.81	5.54	16.75	2.43	1.77	34.72	22.19	8.65	1.12	4.38	5.89
30	E5_Aa	NovelBoundary	0	10.74	8.34	12.43	10.35	7.37	12.74	5.84	3.98	9.01	22.89	2.91	7.56	4.65	5.30	8.37	5.51	40.76	32.36	0.00	7.28	15.28	2.48	2.46	20.10	18.30	7.98	0.00	8.36	2.97
31	E5_Ab	NovelBoundary	0	21.65	42.37	31.32	0.00	0.00	29.12	5.49	2.09	14.86	38.59	12.91	44.55	13.18	30.27	22.52	37.56	59.00	74.62	8.09	3.80	20.38	12.54	41.12	46.00	23.72	45.19	6.76	109.32	17.03
32	ER5a	ExonRegion	0	22.03	50.07	22.98	0.00	0.00	23.84	4.66	3.24	12.28	30.17	15.47	30.88	11.11	24.43	10.24	20.25	32.37	55.90	6.87	1.16	13.53	12.81	32.30	37.61	34.16	56.74	4.36	110.84	16.85
33	ER5b	ExonRegion	0	23.35	44.19	42.28	16.38	7.37	55.44	4.90	12.95	33.15	51.15	26.21	54.81	32.64	47.27	30.52	43.27	81.16	91.72	25.38	10.36	29.88	27.12	42.57	64.92	47.37	77.65	26.80	117.17	30.71
34	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	4.05	1.76	1.61	2.68	1.62	1.13	0.00	0.00	4.82	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.73	0.00
35	E5a_E6a	KnownJunction	0	37.75	44.02	57.68	40.77	7.37	76.97	2.35	21.15	44.28	48.69	44.04	43.34	29.74	74.49	15.75	83.46	101.58	94.27	32.37	6.29	30.84	54.74	51.52	90.86	49.67	56.52	45.57	78.76	30.31
36	I5	Intron	0	1.65	0.00	0.43	1.84	2.50	1.76	0.52	0.94	2.02	0.74	1.22	0.95	0.67	2.32	1.18	1.27	2.30	4.94	0.00	0.00	0.37	0.46	0.00	1.65	0.37	1.61	1.41	7.52	2.58
37	I5_SR1	SilentIntronRegion	0	1.66	0.00	0.43	1.86	2.53	1.78	0.52	0.95	2.04	0.75	1.23	0.96	0.67	2.34	1.19	1.28	2.32	4.99	0.00	0.00	0.37	0.47	0.00	1.67	0.37	1.63	1.42	7.60	2.60
38	E6_Aa	NovelBoundary	0	4.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	1.11	0.00	3.82	3.83	4.62	0.00	0.00	2.05	0.00	0.00	3.05	0.00	0.00	0.00	7.37	0.00
39	ER6a	ExonRegion	0	37.82	57.90	49.79	21.07	1.18	82.73	6.71	24.20	50.34	53.83	41.11	80.38	36.04	96.97	33.86	90.30	109.25	134.70	37.44	14.77	46.47	39.84	58.49	103.92	54.68	88.81	59.52	134.92	38.78
40	E6a_E7a	KnownJunction	0	79.39	69.22	90.44	20.92	0.00	168.43	10.87	27.47	122.81	100.34	102.50	118.46	40.79	194.14	53.22	250.38	195.97	268.03	40.46	7.36	98.43	69.72	83.68	143.68	78.65	131.66	56.21	246.31	85.47
41	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
42	ER7a	ExonRegion	0	51.83	95.68	75.67	8.06	10.94	137.77	13.19	30.86	92.87	96.33	70.56	143.41	57.48	161.62	60.99	138.79	204.85	168.46	43.73	22.24	82.98	57.53	79.63	166.47	103.40	130.04	62.45	194.49	77.76
43	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
44	E7a_E8a	KnownJunction	0	90.96	123.71	116.38	0.00	26.82	138.85	10.99	50.96	110.42	85.84	76.78	152.92	42.00	196.15	105.44	103.27	177.60	117.39	40.46	33.41	97.07	93.30	67.82	270.67	145.10	130.97	69.53	211.72	57.97
45	I7_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.44	0.00	0.00	0.44	1.30	0.00	0.00	0.00	0.06	0.00	0.00	0.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER8a	ExonRegion	0	82.41	99.09	106.51	22.71	18.27	145.37	12.66	35.45	94.51	124.08	79.69	140.69	58.34	177.81	82.54	141.61	199.63	177.47	36.84	29.34	97.53	71.08	78.58	191.36	121.12	157.99	72.83	197.64	78.00
47	E8_Da	NovelBoundary	0	0.00	4.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.03	0.00	0.00	0.00	3.74	0.00	3.60	4.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E8a_E9a	KnownJunction	0	53.91	127.39	96.69	53.49	21.66	152.70	10.30	30.06	113.80	127.51	87.50	139.24	64.07	187.78	59.40	103.81	192.79	210.63	32.15	29.28	86.72	69.72	106.58	186.56	117.71	169.94	80.26	274.49	121.65
49	I8_AR1	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	1.12	1.44	0.00	1.24	2.04	0.65	0.00	0.00	6.15	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	I8_AR2	ActiveIntronRegion	0	0.00	0.00	0.96	0.00	0.00	1.01	0.00	0.00	1.12	0.38	0.00	1.89	2.90	2.40	0.00	0.00	6.04	3.05	1.33	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.00	0.00
51	I8_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	4.30	0.00	1.13	0.00	0.76	1.65	0.00	0.00	2.36	0.99	2.05	0.00	0.00	2.68	2.57	3.73	0.00	0.80	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
52	I8_AR4	ActiveIntronRegion	0	0.84	0.00	0.99	6.38	1.93	1.61	0.00	0.62	1.94	0.29	1.41	1.32	0.90	1.52	0.00	0.00	3.92	0.00	0.75	0.00	1.02	0.00	0.71	1.70	0.30	0.62	0.00	0.32	0.00
53	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	8.37	10.86	8.19	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
54	ER9a	ExonRegion	0	46.90	42.46	84.65	11.69	8.21	63.61	5.33	11.68	46.69	57.18	20.23	81.31	45.35	110.45	73.37	68.57	139.11	162.23	23.77	18.46	39.17	39.77	62.59	93.35	51.55	96.07	21.93	147.21	52.64
55	E9_Da	KnownBoundary	0	41.82	9.11	36.60	0.00	5.89	24.56	2.92	7.07	24.12	14.82	3.04	49.58	23.50	62.42	42.26	41.31	98.34	99.15	8.09	3.23	18.37	35.88	31.18	33.80	13.56	77.85	0.00	124.24	32.32
56	ER9b	ExonRegion	0	20.00	14.35	18.68	2.62	1.25	31.12	3.56	3.81	17.75	17.95	3.37	35.01	17.73	41.04	32.64	33.63	54.96	77.60	9.69	8.16	18.49	19.45	22.43	30.76	18.18	45.16	4.88	72.06	20.35
57	IG30	Intergenic	0	13.82	34.38	30.17	4.97	2.76	34.43	2.56	7.96	36.38	33.51	13.39	28.92	21.39	30.67	34.13	27.54	51.44	53.02	11.60	6.98	23.97	19.83	20.83	55.23	32.18	45.04	20.14	63.57	29.42
58	IG30_AR1	ActiveIntergenicRegion	0	35.32	88.35	77.52	12.84	7.25	86.59	6.51	20.32	92.88	86.23	34.14	74.67	54.92	76.94	85.01	69.13	129.59	137.78	28.65	17.41	61.78	50.11	53.39	137.90	81.19	111.95	49.52	164.75	73.30
59	IG30_SR1	SilentIntergenicRegion	0	1.55	4.12	2.41	0.52	0.00	5.64	0.26	0.54	2.52	2.55	0.93	1.88	1.63	5.18	6.67	3.61	7.24	2.39	1.85	1.54	1.93	1.96	2.27	10.65	4.16	9.77	5.13	3.45	5.93