Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-356I2.1	Gene	0	5.08	18.11	25.65	74.75	26.58	24.05	23.29	16.72	33.21	17.66	23.39	25.41	11.76	9.34	16.12	9.73	13.88	21.41	16.48	3.79	17.29	11.98	15.21	16.50	13.84	12.17	6.41	4.78	21.18
2	448942	Transcript	0	3.05	9.35	19.49	58.63	23.06	17.75	22.47	14.84	22.81	12.20	18.46	22.30	7.70	7.31	12.76	7.58	8.31	15.07	8.42	1.61	12.24	6.88	13.33	11.77	11.07	6.60	8.46	3.77	9.85
3	431144	Transcript	0	1.90	2.82	3.79	13.54	1.57	5.19	2.73	0.63	7.41	1.85	4.95	4.04	0.35	1.27	2.17	3.30	3.59	5.19	3.37	0.73	2.94	1.66	1.17	4.29	0.32	0.23	0.01	0.61	3.48
4	ER1a	ExonRegion	0	0.00	0.05	1.21	12.54	0.00	0.00	0.19	1.49	0.91	1.24	0.04	1.30	0.00	0.04	0.00	0.00	0.00	5.16	0.00	0.00	0.63	0.00	0.06	0.14	1.34	1.25	0.03	0.10	0.00
5	E1_Da	NovelBoundary	0	18.64	0.00	6.70	8.63	7.37	7.33	2.92	6.42	1.55	9.15	0.00	2.56	0.00	5.03	9.37	3.29	6.24	23.12	8.09	3.56	3.89	2.33	0.00	3.05	0.00	0.00	0.00	0.00	14.06
6	E1a_E2a	KnownJunction	0	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	1.74	0.00	0.00	2.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E4a	NovelJunction	0	0.00	0.00	2.94	0.00	0.00	3.68	2.92	0.00	0.00	0.00	1.42	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.61	0.00	2.22	4.73	0.00	0.00	0.00	0.00	1.68
8	E1a_E4b	NovelJunction	0	0.00	0.00	0.00	19.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	1.30	4.18	8.01	16.24	7.83	10.23	5.26	4.71	5.95	6.14	5.23	8.52	2.21	2.61	2.29	3.45	4.89	12.92	5.21	1.58	7.07	3.16	4.62	2.20	2.61	2.91	2.40	1.01	4.25
10	I1_AR1	ActiveIntronRegion	0	3.91	7.45	24.30	53.91	18.42	19.92	19.59	11.15	13.78	14.49	12.57	12.37	5.50	5.38	6.15	7.64	5.22	22.49	6.55	4.32	20.50	11.25	14.07	5.60	4.76	13.98	3.59	2.34	13.61
11	I1_SR2	SilentIntronRegion	0	0.00	2.61	16.17	19.16	1.37	9.20	4.24	3.17	0.70	7.17	0.12	7.34	0.94	1.91	5.79	3.93	2.69	22.59	8.90	0.00	1.08	5.97	5.61	0.00	2.46	1.30	0.00	0.00	1.34
12	I1_AR2	ActiveIntronRegion	0	0.46	1.39	7.94	12.43	3.15	6.79	2.61	2.43	3.79	3.75	4.30	8.03	1.84	1.90	2.93	3.53	3.84	12.34	6.24	0.00	4.81	4.19	4.93	1.39	2.62	3.22	0.00	0.35	1.89
13	I1_SR3	SilentIntronRegion	0	0.92	2.59	6.09	9.45	3.89	6.61	2.14	4.57	4.92	4.68	4.31	6.69	1.53	1.44	0.32	2.35	4.59	11.69	3.63	1.06	7.42	2.48	3.31	1.39	1.48	1.58	3.93	0.71	2.10
14	I1_AR3	ActiveIntronRegion	0	5.70	7.00	18.13	35.84	30.47	15.15	15.37	19.24	10.47	14.15	19.21	26.59	10.87	8.62	4.84	5.47	7.60	28.76	6.59	3.63	8.21	11.12	18.62	5.80	7.08	5.81	5.25	5.79	12.00
15	I1_SR4	SilentIntronRegion	0	1.12	5.28	5.96	7.80	6.25	9.78	1.48	1.55	3.91	3.55	1.52	5.85	0.86	1.36	1.82	1.75	5.06	9.73	5.72	0.64	3.80	1.01	2.46	1.46	2.19	1.17	1.27	0.47	3.78
16	I1_AR4	ActiveIntronRegion	0	1.50	0.11	6.25	15.11	0.00	15.17	4.97	0.55	15.35	8.86	1.90	7.50	0.95	2.06	0.00	5.48	11.89	8.82	4.68	0.66	7.56	1.92	2.59	5.31	2.05	2.83	1.34	0.00	11.59
17	I1_AR5	ActiveIntronRegion	0	0.09	3.74	4.32	13.38	8.22	11.62	5.73	5.10	7.82	5.96	4.43	10.57	2.11	3.91	2.75	4.54	6.48	13.17	6.80	1.34	5.49	1.40	1.95	1.54	3.29	1.39	2.11	0.92	1.87
18	I1_SR5	SilentIntronRegion	0	0.65	5.16	4.28	17.10	6.59	12.12	5.29	2.81	3.59	7.98	7.60	8.89	1.37	2.77	2.92	4.33	3.69	11.31	4.96	3.10	6.44	1.05	2.46	3.25	2.38	0.71	1.94	0.74	3.71
19	E2_Aa	NovelBoundary	0	3.01	4.46	3.24	47.02	0.00	1.46	8.12	0.00	15.01	8.07	3.83	7.44	2.67	1.02	7.57	0.00	11.16	0.00	0.00	0.00	5.58	2.14	4.83	3.05	1.93	0.00	0.00	0.00	2.51
20	ER2a	ExonRegion	0	3.90	4.84	16.72	67.61	33.15	24.87	21.07	13.62	19.84	16.31	25.18	27.68	6.48	6.56	3.46	6.92	5.05	26.03	8.35	1.28	7.51	9.26	12.43	10.70	11.66	7.70	6.38	4.31	10.29
21	E2_Da	NovelBoundary	0	0.00	8.82	4.48	10.78	0.00	3.18	2.80	0.00	5.51	4.07	6.23	7.08	0.00	4.34	0.00	3.75	0.90	9.25	0.00	0.00	5.13	0.00	4.92	0.00	1.59	4.38	0.00	0.00	2.87
22	E2a_E3b	KnownJunction	0	0.00	4.27	22.22	50.26	7.37	19.68	25.06	12.19	16.84	15.26	14.05	27.41	7.58	5.72	9.97	2.98	2.68	0.00	8.09	0.00	9.79	4.13	15.71	13.70	12.24	3.65	18.39	6.52	10.17
23	E2a_E4a	NovelJunction	0	2.60	0.00	0.00	0.00	0.00	3.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E2a_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	3.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.20	0.00
25	I2	Intron	0	1.02	5.25	0.80	6.82	4.64	6.54	2.40	0.44	4.73	3.43	4.39	3.00	0.31	0.75	1.10	2.78	1.60	6.45	3.80	0.33	3.73	0.21	1.07	1.79	1.36	0.37	1.09	0.19	1.99
26	I2_SR1	SilentIntronRegion	0	1.02	5.27	0.80	6.83	4.66	6.55	2.40	0.44	4.74	3.44	4.40	3.01	0.31	0.75	1.10	2.79	1.60	6.47	3.81	0.33	3.74	0.21	1.08	1.79	1.36	0.37	1.09	0.19	1.99
27	E3_Aa	NovelBoundary	0	0.00	4.07	1.37	8.63	0.00	7.25	0.00	2.34	17.05	3.99	0.00	3.07	0.00	5.61	0.00	2.91	5.51	4.62	8.09	0.00	4.01	0.00	0.00	0.00	0.00	0.00	7.60	0.00	3.37
28	ER3a	ExonRegion	0	0.84	5.63	2.99	7.68	3.15	8.50	3.06	1.26	10.25	3.70	5.22	4.68	0.71	1.62	4.34	2.77	7.18	10.39	6.74	1.46	4.15	0.84	0.23	6.01	0.64	0.45	0.03	1.22	1.55
29	E3_Da	NovelBoundary	0	0.00	0.00	1.07	0.00	0.00	3.76	7.09	2.14	5.97	0.00	1.61	6.75	3.28	1.20	8.57	7.65	15.22	14.38	0.00	7.53	7.30	0.00	14.13	10.89	0.00	4.16	4.67	2.20	9.05
30	E3a_E4a	KnownJunction	1	2.60	13.28	17.66	74.20	52.02	19.99	44.86	14.03	36.63	11.86	24.30	27.35	6.31	10.50	26.51	10.25	13.30	23.89	0.00	0.00	10.67	0.00	23.30	18.78	16.93	5.62	4.52	2.20	1.68
31	E3a_E4b	KnownJunction	0	2.95	0.00	4.58	19.41	0.00	1.88	2.40	0.00	4.57	0.00	4.68	3.40	0.00	0.93	0.00	3.82	0.00	0.00	0.00	0.00	1.72	2.48	2.12	2.57	0.00	0.00	0.00	0.00	5.41
32	ER3b	ExonRegion	0	5.17	4.42	22.36	33.29	23.19	23.27	35.03	16.57	36.22	14.84	20.27	34.12	9.32	10.29	22.79	13.70	10.19	13.18	4.21	0.00	11.21	7.02	14.96	13.65	12.37	7.53	9.85	5.34	13.47
33	I3_SR1	SilentIntronRegion	0	0.49	0.74	0.77	3.86	3.57	2.54	0.85	0.64	3.02	1.72	1.01	1.00	0.75	1.30	0.63	1.50	1.78	3.25	1.84	0.42	3.24	0.00	0.35	1.74	0.82	0.06	0.35	0.06	1.26
34	E4_Aa	NovelBoundary	0	0.00	14.54	0.95	8.84	0.00	3.91	0.00	0.00	13.03	3.28	7.53	1.20	2.87	3.46	15.35	0.00	2.32	9.25	0.00	0.00	0.00	0.00	0.00	8.73	1.86	0.00	0.00	0.00	0.00
35	ER4a	ExonRegion	0	6.03	15.44	39.41	99.27	37.17	31.82	39.69	39.93	43.27	15.25	45.33	41.95	16.45	17.44	18.27	19.83	19.71	26.37	17.37	3.23	32.33	20.93	20.48	19.76	16.49	9.49	20.88	5.62	19.58
36	E4_Ab	KnownBoundary	0	8.91	16.48	57.78	168.89	14.30	53.98	43.48	44.19	31.98	24.21	45.55	45.78	13.76	19.32	16.74	10.56	15.58	28.51	24.28	12.32	46.69	18.67	30.34	30.80	21.25	12.70	7.50	8.72	23.41
37	ER4b	ExonRegion	0	8.28	38.06	53.19	161.37	61.76	49.28	55.21	33.40	73.26	36.22	59.52	58.16	27.26	21.69	21.75	17.10	26.02	38.65	28.98	5.92	36.74	31.06	35.97	36.65	33.19	29.28	10.66	7.74	58.13
38	E4_Da	KnownBoundary	0	4.78	57.69	71.66	160.26	47.45	48.77	43.08	40.16	74.79	42.74	46.72	50.54	20.86	16.29	16.74	21.34	17.31	23.37	56.65	6.12	31.77	40.84	34.62	53.06	39.02	14.20	22.51	6.38	68.73
39	ER4c	ExonRegion	0	8.83	27.55	37.93	106.56	31.69	27.89	26.42	22.64	40.48	25.46	20.35	27.71	17.11	10.90	31.13	13.08	17.44	24.02	25.14	6.73	22.72	13.84	21.32	19.34	18.82	18.46	9.03	7.66	27.21
40	IG33_AR6	ActiveIntergenicRegion	0	3.28	19.15	27.72	139.09	53.58	42.08	39.07	20.19	52.17	27.98	30.65	34.26	16.50	7.85	16.63	16.10	11.42	29.64	19.55	7.03	45.11	15.63	22.59	16.46	20.78	14.43	18.21	2.08	36.50
41	IG33_AR5	ActiveIntergenicRegion	0	1.63	22.06	13.36	87.32	48.33	15.70	31.45	15.42	32.46	23.63	22.65	23.95	10.12	12.56	21.65	14.58	5.68	24.68	9.73	4.20	23.34	15.78	11.70	26.20	19.58	10.77	12.55	3.72	21.64
42	IG33_AR1	ActiveIntergenicRegion	0	0.81	0.00	0.00	22.69	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	1.40	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00