Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BX276089.2	Gene	0	29.61	79.62	47.37	39.82	26.28	93.77	22.37	23.80	30.57	78.62	87.46	56.11	16.37	60.13	20.57	108.85	47.91	56.05	91.54	34.32	156.65	33.74	63.91	31.47	42.06	29.11	42.68	44.59	41.76
2	253339	Transcript	0	30.91	58.85	41.65	31.94	17.35	97.66	25.70	17.21	20.82	63.07	59.92	32.64	14.01	43.72	14.69	117.06	29.17	56.38	62.50	27.82	146.88	25.94	53.16	21.23	26.35	11.89	30.71	17.36	28.74
3	441107	Transcript	0	0.31	0.59	0.49	0.00	1.05	1.31	0.00	1.46	0.53	2.05	3.22	0.35	0.27	3.45	0.43	0.45	1.46	0.30	2.79	0.13	1.64	1.46	0.78	0.23	4.78	0.17	0.44	2.47	0.31
4	ER1a	ExonRegion	0	3.22	8.83	3.79	8.33	5.58	9.37	2.42	1.04	1.41	5.98	4.26	3.17	1.16	4.52	1.33	17.21	2.18	8.94	6.41	3.30	15.45	3.61	7.02	1.27	2.97	2.14	0.92	2.28	3.28
5	E1_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.89	0.00	4.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E3a	KnownJunction	0	4.42	77.46	16.62	9.92	12.82	84.75	32.27	6.67	12.27	83.61	50.36	23.61	9.71	35.36	0.00	143.89	17.11	100.05	32.37	10.34	136.54	21.73	54.27	5.98	15.50	17.72	2.24	23.99	27.07
7	I1	Intron	0	0.00	1.73	0.35	0.00	0.00	0.68	1.50	0.61	0.51	0.48	1.48	1.12	0.21	0.26	0.19	0.91	1.42	0.32	1.72	0.68	3.60	0.52	0.00	0.27	0.24	0.00	0.08	0.20	0.94
8	I1_SR1	SilentIntronRegion	0	0.00	1.73	0.35	0.00	0.00	0.68	1.50	0.61	0.51	0.48	1.48	1.13	0.22	0.26	0.19	0.91	1.42	0.32	1.72	0.68	3.60	0.52	0.00	0.27	0.24	0.00	0.08	0.20	0.94
9	E2_Aa	NovelBoundary	0	4.90	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	2.00	4.27	6.14	0.00	0.00	0.00	0.00	3.17	0.00	0.00	0.00	1.97	0.00	0.00	0.00	1.93	0.00	4.08	0.00	3.80
10	ER2a	ExonRegion	0	1.50	0.00	0.39	0.00	0.00	1.28	0.00	0.43	0.52	1.01	0.56	1.59	0.00	0.21	2.15	2.20	0.70	0.45	3.00	0.64	2.01	0.42	0.00	0.00	1.32	0.00	0.43	0.00	1.56
11	E2_Da	NovelBoundary	0	0.00	0.00	1.37	0.00	0.00	0.00	0.00	2.54	0.00	4.07	3.23	3.07	0.00	0.00	0.00	0.00	1.40	0.00	16.18	0.00	5.90	1.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E3_Aa	NovelBoundary	0	8.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	2.00	1.46	0.00	1.24	0.97	0.00	3.06	1.13	0.00	0.00	0.00	2.05	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	50.42	78.73	58.33	53.87	19.82	146.00	35.51	24.96	20.09	122.53	137.65	56.65	14.79	96.61	10.29	168.91	44.01	79.42	101.42	45.43	226.40	55.01	108.11	31.63	54.73	29.28	52.00	44.80	31.87
15	E3_Da	NovelBoundary	0	0.00	0.00	2.04	0.00	0.00	3.84	2.75	0.00	0.00	1.72	0.00	4.25	0.00	1.02	8.17	0.00	0.00	0.00	8.09	0.00	1.97	0.00	0.00	0.00	3.49	2.15	0.00	0.00	0.00
16	E3a_E4a	KnownJunction	0	0.00	0.00	1.49	0.00	0.00	1.65	0.00	5.08	0.00	0.00	12.24	0.00	0.00	4.59	0.00	0.00	2.25	0.00	8.09	0.00	1.85	4.96	0.00	0.00	5.46	0.00	0.00	6.52	0.00
17	E3a_E5a	KnownJunction	0	103.17	65.34	140.82	76.14	23.43	173.50	38.73	53.60	23.54	110.73	122.05	64.67	31.30	95.47	9.17	195.07	51.28	60.11	97.11	53.42	231.36	68.74	118.74	35.41	62.51	17.64	71.37	29.25	43.18
18	E3a_E6a	NovelJunction	0	3.01	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	5.95	1.33	0.00	0.00	2.02	0.00	3.75	0.00	0.00	0.00	0.00	4.09	0.00	4.92	0.00	7.12	0.00	0.00	0.00	0.00
19	I3	Intron	0	0.64	1.90	0.15	0.25	0.68	1.20	0.56	0.03	2.48	1.19	1.25	1.08	0.14	0.50	1.80	0.43	1.54	0.88	3.02	0.55	3.87	0.16	0.09	0.90	0.43	0.36	0.06	0.37	0.81
20	I3_SR1	SilentIntronRegion	0	0.72	4.44	0.00	4.94	0.94	0.95	0.98	0.00	0.35	1.66	0.00	0.43	0.00	0.00	6.36	0.41	2.02	0.00	3.49	3.27	4.49	0.00	0.00	0.38	2.96	0.00	0.00	0.88	0.00
21	I3_AR1	ActiveIntronRegion	0	0.80	3.44	0.28	0.59	1.49	2.04	1.04	0.00	1.99	1.82	3.43	1.77	0.32	1.11	2.28	1.38	2.22	1.11	5.10	0.39	5.68	0.00	0.00	1.37	0.59	0.52	0.00	0.57	1.21
22	I3_SR2	SilentIntronRegion	0	0.59	1.39	0.12	0.00	0.45	0.98	0.42	0.04	2.69	1.00	0.68	0.91	0.09	0.34	1.52	0.17	1.34	0.84	2.43	0.51	3.35	0.21	0.12	0.79	0.30	0.33	0.08	0.30	0.72
23	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	5.81	0.00	1.09	0.00	2.91	3.53	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER4a	ExonRegion	0	0.05	2.97	0.56	0.00	5.24	3.63	0.02	1.80	2.11	3.80	3.28	0.16	1.34	5.64	0.00	0.05	4.38	1.03	2.86	0.00	4.35	1.94	3.88	1.15	4.09	0.84	1.77	5.83	0.00
25	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	3.44	0.00	1.61	1.45	0.00	1.24	0.00	0.00	2.75	0.00	8.09	0.00	12.71	0.00	0.00	0.00	0.00	6.05	0.00	0.00	3.63
26	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.43	0.00	0.00	0.00	6.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.03	0.00	0.00	0.00	0.00
27	E5_Aa	NovelBoundary	0	0.00	4.17	0.00	0.00	0.00	0.00	2.92	0.00	2.31	0.00	2.66	1.87	0.00	0.00	0.00	0.00	0.00	0.00	16.18	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER5a	ExonRegion	0	84.59	101.01	117.83	55.83	22.85	143.37	35.81	47.31	25.21	143.82	134.13	74.86	25.96	126.96	15.29	192.18	73.40	96.96	102.14	37.49	223.72	96.63	156.35	31.64	62.94	40.45	77.44	90.85	55.63
29	E5a_E6a	KnownJunction	1	113.31	148.24	126.37	30.63	28.74	221.53	33.76	49.82	48.45	201.17	155.29	89.64	42.10	152.35	18.34	329.33	99.90	154.12	202.31	55.57	307.29	69.43	190.40	23.09	94.26	58.84	64.21	141.40	99.21
30	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	I5_AR1	ActiveIntronRegion	0	0.07	1.03	0.27	1.15	0.00	1.29	0.00	1.99	3.24	1.58	0.56	1.87	0.31	0.11	1.76	0.00	2.70	0.00	2.81	0.00	3.07	0.00	0.00	0.00	0.23	0.00	0.88	0.26	1.98
32	I5_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.02	0.00	2.38	0.00	0.00	1.81	0.00	0.00	3.01	0.00	4.53	0.00	2.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
33	E6_Aa	NovelBoundary	0	0.00	3.49	1.15	0.00	0.00	3.91	0.00	0.00	4.14	1.96	0.00	0.00	0.00	0.00	0.00	3.52	0.00	4.62	0.00	0.00	5.62	0.00	0.00	2.63	1.59	0.00	0.00	0.00	0.00
34	ER6a	ExonRegion	0	43.80	102.42	87.49	47.05	31.46	93.96	22.40	43.76	40.13	99.35	103.58	83.44	25.68	78.05	17.02	126.39	67.50	72.40	120.00	35.02	165.41	54.77	86.99	33.07	54.13	50.49	45.54	78.99	60.51
35	E6_Da	NovelBoundary	0	0.00	15.90	3.91	0.00	0.00	3.49	2.46	0.00	19.40	0.00	4.49	7.38	0.00	4.32	8.37	9.87	3.78	10.02	8.09	0.00	35.14	2.48	4.33	8.25	1.48	0.00	15.36	3.50	7.46
36	E6a_E7a	KnownJunction	1	10.26	111.49	36.55	10.57	18.42	93.89	5.26	14.28	16.47	53.29	117.46	36.02	1.91	45.47	8.37	118.27	35.11	64.73	97.11	15.05	187.56	18.13	52.99	32.06	25.65	20.08	26.74	40.71	25.19
37	I6	Intron	0	1.33	4.10	0.22	0.93	1.14	2.14	0.73	0.24	3.30	1.24	1.42	0.74	0.72	0.87	2.43	2.27	2.40	2.01	5.96	2.74	5.70	0.14	0.19	1.62	0.37	0.33	0.52	1.10	0.86
38	I6_AR1	ActiveIntronRegion	0	4.15	4.76	1.08	7.50	1.58	3.46	1.95	0.00	6.65	2.33	0.77	1.32	0.00	1.15	5.32	3.20	1.07	2.95	11.77	1.97	10.07	0.58	1.75	1.39	0.00	1.01	3.55	2.10	2.29
39	I6_SR1	SilentIntronRegion	0	0.95	4.02	0.17	0.43	1.17	2.03	0.48	0.31	3.08	0.94	1.46	0.70	0.71	0.71	2.38	2.53	2.57	1.96	5.06	3.29	4.71	0.12	0.06	1.44	0.44	0.32	0.25	1.00	0.90
40	I6_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.41	0.00	0.00	1.24	0.00	0.00	5.60	2.34	0.82	2.32	1.01	0.52	3.38	0.00	0.00	1.83	0.00	0.00	0.00	0.00	0.00
41	I6_AR3	ActiveIntronRegion	0	1.91	4.59	0.00	0.00	0.87	2.21	1.44	0.00	2.69	2.32	1.70	0.55	1.27	1.61	0.82	0.44	2.40	1.72	7.98	0.49	8.65	0.00	0.00	2.69	0.25	0.00	0.33	1.16	0.00
42	E7_Aa	NovelBoundary	0	2.42	9.70	0.00	0.00	0.00	5.22	5.84	0.00	1.55	1.64	1.39	2.44	0.00	0.00	0.00	3.14	2.70	0.00	16.18	3.72	10.79	0.00	0.00	2.99	0.00	0.00	0.00	1.98	0.00
43	ER7a	ExonRegion	0	19.45	78.14	30.71	43.78	30.40	105.13	24.73	14.10	23.17	80.99	116.47	51.41	10.65	59.39	16.22	107.92	43.47	40.31	88.16	33.31	177.00	17.97	54.21	34.34	42.24	20.11	53.58	32.59	34.44
44	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.82	5.71	1.23	4.13	0.00	0.00	18.34	3.82	2.25	0.00	0.00	4.13	0.00	1.94	0.00	0.00	0.00	0.00	0.00	0.00	1.88
45	E7a_E8a	KnownJunction	0	40.17	78.05	52.32	67.73	20.48	50.45	21.46	40.71	14.65	63.83	71.40	53.91	17.32	53.11	16.54	45.13	29.01	27.74	40.46	16.87	130.28	9.14	45.41	25.54	25.31	42.79	41.10	47.99	39.95
46	I7	Intron	0	1.28	4.26	0.46	0.00	0.45	4.66	1.02	0.59	6.21	3.30	2.07	1.64	1.24	0.62	4.08	3.75	4.10	1.34	2.63	1.91	5.09	0.50	0.41	1.38	1.64	0.94	0.50	1.94	1.35
47	I7_AR1	ActiveIntronRegion	0	1.08	3.64	0.00	0.00	0.00	4.37	1.52	1.32	6.07	3.42	3.05	0.88	1.90	0.46	1.16	2.78	2.63	1.45	7.13	1.86	7.55	2.06	0.89	2.07	0.65	1.46	1.64	2.99	1.86
48	I7_SR1	SilentIntronRegion	0	1.32	4.41	0.56	0.00	0.55	4.73	0.90	0.43	6.26	3.29	1.86	1.81	1.10	0.66	4.74	3.97	4.44	1.31	1.63	1.92	4.55	0.15	0.30	1.23	1.86	0.82	0.25	1.71	1.24
49	E8_Aa	NovelBoundary	0	2.36	3.78	0.00	0.00	0.00	10.74	0.00	4.63	18.00	1.96	11.48	1.57	0.00	2.86	0.00	10.17	10.26	0.00	0.00	0.00	7.90	2.43	0.00	0.00	3.18	2.19	0.00	6.07	1.45
50	ER8a	ExonRegion	1	34.21	74.67	58.83	41.12	38.57	67.30	15.83	35.45	24.39	81.61	91.90	71.77	23.14	61.79	16.71	94.26	53.27	50.05	62.74	29.23	126.33	33.78	67.56	35.92	51.59	53.17	37.19	65.72	46.39
51	E8_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	6.06	2.17	1.94	3.99	0.00	0.00	1.87	1.40	1.95	0.00	7.19	1.40	0.00	0.00	8.10	9.71	4.38	0.00	0.00	3.79	0.00	0.00	3.77	0.00
52	E8a_E9a	KnownJunction	1	53.09	68.83	34.96	92.32	30.95	66.61	7.72	32.20	36.30	107.49	118.53	85.72	22.51	66.03	8.17	98.99	45.94	36.99	64.74	43.00	145.48	36.32	78.80	24.11	67.85	43.99	62.87	56.25	38.10
53	E8a_E10a	NovelJunction	0	0.00	0.00	4.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	8.40	0.00
54	I8	Intron	0	1.16	0.87	0.00	0.00	0.00	2.24	0.00	0.50	1.52	1.57	2.58	0.00	0.00	0.98	0.00	2.50	0.81	0.52	0.00	1.29	2.71	0.00	0.49	0.00	0.00	0.00	0.00	0.88	0.00
55	I8_SR1	SilentIntronRegion	0	1.18	0.88	0.00	0.00	0.00	2.26	0.00	0.50	1.54	1.58	2.61	0.00	0.00	0.99	0.00	2.53	0.82	0.53	0.00	1.30	2.74	0.00	0.50	0.00	0.00	0.00	0.00	0.89	0.00
56	E9_Aa	NovelBoundary	0	0.00	4.56	0.00	0.00	0.00	1.61	0.00	0.00	1.46	2.04	5.41	0.00	0.00	1.26	0.00	0.00	4.05	0.00	8.09	2.98	1.93	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER9a	ExonRegion	0	29.75	63.36	56.69	64.79	30.96	100.84	21.66	31.66	29.30	88.25	98.63	80.21	24.94	65.82	15.39	106.76	63.45	50.02	62.30	43.58	129.37	49.90	71.40	34.28	62.17	47.35	43.63	56.35	44.42
58	E9_Da	NovelBoundary	0	2.65	0.00	1.17	10.14	5.60	8.75	0.00	4.98	8.80	0.00	0.00	3.46	0.00	4.03	0.00	0.00	1.40	0.00	7.87	3.39	12.23	2.48	0.00	3.05	1.93	0.00	0.00	3.86	3.63
59	E9a_E10a	KnownJunction	1	20.06	44.69	59.35	46.81	42.89	93.31	19.22	20.16	24.39	94.43	86.08	56.17	25.73	46.53	0.00	95.78	50.35	15.41	56.65	30.60	163.33	33.93	77.57	35.71	45.92	48.41	44.48	75.62	23.11
60	I9	Intron	0	1.39	7.35	1.24	2.21	2.41	5.63	1.55	2.10	8.70	4.80	1.28	2.49	0.92	1.60	5.46	2.95	5.51	2.56	6.10	2.58	7.90	0.78	0.72	2.78	2.82	2.37	0.39	4.47	2.18
61	I9_SR1	SilentIntronRegion	0	1.39	7.37	1.24	2.22	2.42	5.65	1.55	2.11	8.73	4.82	1.29	2.50	0.92	1.61	5.49	2.94	5.54	2.57	6.11	2.59	7.94	0.78	0.73	2.79	2.83	2.38	0.40	4.48	2.19
62	E10_Aa	NovelBoundary	0	4.95	6.98	0.00	0.00	0.00	5.22	7.95	0.00	16.05	8.99	7.37	10.78	0.00	6.60	42.85	27.62	13.51	4.62	0.00	0.00	19.09	2.48	0.00	3.05	8.64	1.97	4.37	0.00	7.79
63	ER10a	ExonRegion	0	26.18	110.29	39.01	49.02	37.12	102.52	24.45	19.48	41.83	95.50	97.33	65.43	15.63	63.48	33.73	115.86	53.36	65.36	102.25	51.21	171.69	28.88	66.50	46.86	61.87	28.63	54.25	40.07	53.30
64	E10_Da	KnownBoundary	0	18.58	148.63	9.22	17.26	20.19	217.24	44.63	18.21	39.65	92.43	84.31	45.57	24.11	56.41	46.04	125.15	42.29	56.25	185.90	67.48	327.38	22.22	48.71	77.46	58.15	29.18	54.37	22.38	33.44
65	ER10b	ExonRegion	0	12.84	83.78	5.38	33.37	27.57	123.02	29.37	7.53	46.04	51.95	63.02	39.10	13.89	39.52	48.26	112.04	46.12	56.41	114.09	44.22	204.19	9.65	32.59	42.25	24.42	10.06	48.33	13.91	41.43
66	IG22	Intergenic	0	8.60	70.62	3.51	16.43	16.79	64.06	20.41	3.17	45.52	37.23	44.56	48.08	11.61	29.09	26.89	72.81	39.06	44.03	77.50	24.09	134.05	6.20	19.69	42.32	25.39	7.20	31.14	8.10	27.41
67	IG22_AR1	ActiveIntergenicRegion	0	8.66	71.15	3.54	16.56	16.92	64.54	20.56	3.19	45.86	37.51	44.89	48.43	11.70	29.31	27.09	73.36	39.35	44.36	78.08	24.27	135.01	6.25	19.84	42.64	25.58	7.25	31.36	8.15	27.61