Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LRP11	Gene	0	3.35	17.88	11.64	4.66	20.10	9.10	1.39	20.79	9.98	12.21	6.07	7.68	4.36	13.00	6.40	7.33	9.68	7.86	8.52	21.23	74.48	5.28	9.90	30.71	18.25	4.39	17.74	36.49	75.85
2	367368	Transcript	0	0.89	0.03	0.00	0.00	0.00	1.53	0.00	0.76	0.00	0.02	1.72	2.04	0.00	0.65	0.00	0.51	0.31	0.80	0.00	1.70	3.26	0.37	3.22	0.00	1.95	0.00	0.00	2.86	0.56
3	239367	Transcript	0	5.52	17.57	26.66	5.15	16.30	6.92	1.16	36.32	6.92	13.12	7.65	14.52	4.32	22.04	4.57	7.58	19.47	11.75	7.05	25.83	75.80	11.24	11.43	26.32	24.14	9.21	22.17	61.33	109.38
4	472053	Transcript	0	1.06	0.05	0.07	0.00	0.04	0.25	0.00	39.64	1.07	0.08	0.01	0.06	0.03	0.08	3.02	0.10	0.05	0.06	0.07	12.55	16.79	12.64	1.96	0.36	0.03	0.02	0.03	18.31	7.49
5	463728	Transcript	0	2.14	3.99	0.89	0.00	0.98	2.74	0.67	0.61	0.75	9.54	1.89	2.45	0.17	4.26	0.00	1.42	3.76	3.51	0.98	0.00	3.91	1.18	5.42	5.38	6.83	1.30	2.11	1.68	2.90
6	ER1a	ExonRegion	0	0.56	0.63	2.43	0.00	0.89	0.65	0.17	1.95	0.19	1.16	0.24	0.53	0.21	1.01	0.00	1.32	1.47	0.84	0.66	1.08	2.32	0.03	1.15	0.73	0.89	0.76	0.07	5.41	5.02
7	E1a_E2b	KnownJunction	0	5.07	4.46	9.97	0.00	6.19	8.25	0.00	13.79	0.00	14.90	1.61	5.21	3.38	8.55	0.00	16.98	11.82	9.25	16.18	7.19	2.01	4.18	6.55	13.16	3.60	4.38	4.17	45.74	30.37
8	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.29	0.00	0.00	0.00	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.49	0.00
10	I1	Intron	0	0.20	0.19	0.63	0.59	0.25	0.49	0.10	0.56	0.20	0.19	0.04	0.43	0.04	0.49	0.06	0.33	0.18	0.12	1.14	0.59	3.00	0.17	0.24	0.42	0.19	0.11	0.54	3.19	1.11
11	I1_AR1	ActiveIntronRegion	0	0.44	0.22	2.85	2.44	0.67	1.12	0.41	0.13	0.38	0.69	0.24	1.30	0.27	2.00	0.37	1.01	0.71	0.26	2.61	0.75	4.56	0.98	1.23	1.46	0.58	0.00	0.75	6.10	2.82
12	I1_AR2	ActiveIntronRegion	0	0.00	0.75	1.35	0.00	0.57	1.17	0.00	0.85	0.13	0.00	0.00	0.43	0.00	0.83	0.00	0.58	0.34	0.00	3.33	0.00	3.69	0.00	0.00	0.75	0.00	0.28	0.00	3.21	0.99
13	I1_SR5	SilentIntronRegion	0	0.08	0.04	0.06	0.41	0.00	0.21	0.04	0.87	0.04	0.16	0.00	0.12	0.00	0.10	0.00	0.23	0.06	0.11	0.30	0.83	2.69	0.00	0.10	0.16	0.00	0.00	0.48	2.93	0.61
14	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00	2.14	0.00	0.00	0.00	0.00	0.00	3.91	0.00
15	ER2a	ExonRegion	0	2.08	0.20	0.27	0.00	0.15	0.33	0.00	6.47	0.00	0.31	0.04	0.22	0.12	0.30	0.00	0.38	0.21	0.25	0.27	8.77	3.16	0.11	0.27	0.39	0.13	0.10	0.11	29.79	6.26
16	E2_Ab	KnownBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	11.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	25.97	9.35	0.00	0.00	0.00	0.00	0.00	0.00	64.75	12.91
17	ER2b	ExonRegion	0	4.68	8.93	16.05	6.33	10.60	6.59	1.71	72.61	2.13	9.56	2.47	7.28	3.71	14.29	6.31	8.41	16.42	11.58	4.61	31.20	84.82	15.85	26.74	12.51	13.70	11.20	6.37	152.15	142.86
18	E2_Da	NovelBoundary	0	5.78	0.00	0.00	0.00	0.00	0.00	0.00	66.19	0.00	0.00	0.00	0.00	0.00	0.00	18.34	0.00	0.00	0.00	0.00	31.01	17.53	44.29	2.12	0.00	0.00	0.00	0.00	10.69	8.78
19	E2a_E4a	KnownJunction	0	22.53	10.66	23.05	16.39	14.44	6.79	2.92	34.79	7.77	10.99	2.63	6.36	9.46	19.48	0.00	15.15	13.96	5.39	0.00	31.92	29.80	14.05	21.28	11.42	27.50	12.06	1.94	78.85	81.48
20	E2_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	58.23	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.16	29.12	16.09	2.02	0.00	0.00	0.00	0.00	14.92	8.35
22	ER2c	ExonRegion	0	2.14	0.00	0.00	0.00	0.00	0.00	0.00	72.00	1.12	0.00	0.00	0.00	0.00	0.00	12.09	0.00	0.00	0.00	0.00	25.30	25.75	30.36	1.81	0.00	0.00	0.00	0.00	15.70	9.68
23	I2	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.43	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	1.01	3.31	0.00	0.00	0.00	0.00	0.00	0.00	1.98	0.49
24	I2_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.44	0.00	0.00	0.00	0.00	0.61	0.00	0.00	0.00	1.01	3.32	0.00	0.00	0.00	0.00	0.00	0.00	1.99	0.49
25	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.68	0.00	21.86	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.97	9.14	4.01	3.76	1.07	0.00	0.00	0.00	12.83	5.67
26	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	54.39	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	33.74	83.63	29.46	35.07	0.00	0.00	2.10	0.00	140.37	113.10
27	ER4a	ExonRegion	0	6.48	8.14	37.79	0.72	18.35	5.83	0.28	41.77	5.58	11.51	4.03	17.98	3.94	27.00	3.12	9.29	19.44	12.38	5.77	23.40	49.80	15.53	11.69	13.32	22.27	10.36	11.21	62.04	88.36
28	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	1.08	0.00	0.00	0.00	3.73	0.00	0.00	0.00	0.00	1.93	0.00	4.58	0.00
29	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	2.66	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.09	0.00	4.68	0.00	1.89	0.00	0.00	3.68	0.00
30	E4a_E6a	KnownJunction	0	11.09	9.21	26.96	0.00	19.75	5.83	0.00	22.64	2.83	8.87	9.08	26.02	1.50	34.14	0.00	11.40	35.65	9.25	0.00	11.16	57.12	18.28	11.23	13.64	29.59	10.26	43.93	71.71	166.62
31	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	2.29	1.42
32	ER5a	ExonRegion	0	1.78	0.05	0.00	0.00	0.00	1.25	0.00	1.53	0.00	0.05	0.77	2.54	0.00	1.31	0.00	1.03	0.62	1.60	0.00	3.40	2.42	0.75	1.76	0.00	2.00	0.00	0.00	2.03	1.11
33	E5_Da	NovelBoundary	0	0.00	3.68	0.00	0.00	0.00	1.96	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.23	0.00	0.00	0.00	5.37	2.48	4.48	0.00	0.00	0.00	0.00	0.00	5.51
34	I5	Intron	0	0.10	0.77	0.55	0.22	1.29	0.56	0.13	0.52	0.58	0.36	0.33	0.57	0.27	0.75	0.22	0.43	0.33	0.24	0.70	1.14	3.22	0.08	0.17	1.34	0.62	0.24	0.14	0.94	0.97
35	I5_AR1	ActiveIntronRegion	0	0.00	0.49	0.77	0.00	0.74	1.46	0.00	0.00	2.39	1.10	0.54	0.00	0.20	0.41	0.00	1.13	0.68	0.29	1.46	3.24	6.30	0.00	0.55	0.98	0.87	0.00	0.28	0.00	0.61
36	I5_SR1	SilentIntronRegion	0	0.59	0.64	0.00	0.00	1.35	0.00	0.00	0.00	0.62	0.80	0.99	1.20	1.61	1.63	1.28	1.38	0.83	0.00	0.89	1.53	4.35	0.00	0.50	1.79	1.58	0.87	0.00	0.45	2.04
37	I5_AR2	ActiveIntronRegion	0	0.23	2.36	1.07	0.77	2.61	0.37	0.22	0.89	0.90	0.54	0.51	0.76	0.55	1.33	0.25	0.27	0.64	0.51	1.02	1.31	4.16	0.29	0.19	2.91	0.99	0.59	0.39	1.41	1.21
38	I5_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	1.71	0.48	0.00	0.00	0.00	0.00	0.14	0.58	0.00	0.58	0.00	0.29	0.00	0.00	0.37	0.32	2.42	0.00	0.00	0.93	0.00	0.18	0.00	0.91	1.41
39	I5_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.64	0.36	0.00	0.00	0.00	0.00	0.00	0.33	0.00	1.07	0.00	0.00	0.20	0.00	0.84	0.72	2.25	0.00	0.00	0.00	0.38	0.00	0.00	0.64	0.79
40	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	4.13	1.64	0.00	2.46	0.00	0.00	0.00	0.00	4.31	2.97
41	ER6a	ExonRegion	0	9.90	13.82	32.39	2.21	11.47	6.59	2.30	54.66	7.03	10.60	5.94	14.51	4.64	23.25	3.42	4.92	26.00	14.01	8.58	20.43	76.35	15.39	12.66	25.28	29.18	13.03	10.38	91.90	122.57
42	E6a_E7a	KnownJunction	0	2.71	13.96	40.24	9.27	14.59	1.96	2.29	49.77	5.66	24.65	13.03	17.17	1.53	27.63	9.97	3.82	13.80	10.02	8.09	35.64	74.28	17.55	14.97	34.63	24.17	6.22	11.88	60.57	105.97
43	ER7a	ExonRegion	0	3.51	23.29	35.55	0.89	14.19	7.90	0.18	47.14	3.99	13.93	8.86	14.44	3.44	19.10	3.39	4.27	21.48	17.86	3.84	35.69	71.45	8.80	12.95	21.95	26.88	8.89	14.80	67.06	99.81
44	E7_Ab	KnownBoundary	0	5.90	44.40	46.19	0.00	21.66	15.96	0.00	64.84	4.14	17.54	9.46	20.78	4.74	16.29	8.37	13.62	41.24	22.99	0.00	28.70	121.41	16.63	10.83	22.97	41.33	20.38	17.89	116.33	178.34
45	ER7b	ExonRegion	0	4.06	27.03	31.32	3.46	43.04	9.80	1.80	40.55	4.85	16.01	6.88	11.57	3.63	20.04	2.95	7.79	17.85	11.95	4.29	28.87	71.77	7.20	13.67	33.02	23.32	11.54	11.15	66.33	110.99
46	E7_Da	NovelBoundary	0	0.00	4.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.58	0.00
47	E7a_E8a	KnownJunction	0	8.14	36.74	20.23	21.57	70.15	8.59	0.00	16.37	13.16	21.57	12.97	4.04	2.93	20.21	0.00	3.21	4.19	19.26	0.00	39.12	64.90	2.48	17.24	42.83	24.51	4.25	10.98	50.95	82.57
48	E7a_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	11.49	0.00	0.00	4.63	0.00	0.00	0.00	0.00	1.50	0.00	0.00	3.06	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	1.86	0.00	0.00	2.29	2.51
49	ER8a	ExonRegion	0	5.43	21.97	24.71	5.79	35.75	9.08	0.00	31.38	6.33	18.27	13.70	6.62	5.25	21.58	5.83	1.37	10.96	14.87	12.87	21.17	81.97	4.71	9.91	27.85	22.17	8.20	26.56	48.82	70.70
50	E8_Da	KnownBoundary	0	0.00	0.00	2.32	0.00	7.37	3.91	0.00	0.00	0.00	8.35	11.10	0.00	1.62	4.61	0.00	0.00	3.87	14.64	0.00	0.00	7.70	0.00	0.00	3.05	1.74	3.43	12.08	1.66	0.00
51	E8a_E9a	KnownJunction	0	2.18	17.26	14.40	10.78	7.37	5.06	0.00	25.43	4.75	3.16	0.00	5.30	8.02	11.72	0.00	9.94	9.21	10.02	8.09	22.49	61.33	2.48	4.63	11.90	9.28	12.83	22.66	42.64	58.76
52	ER8b	ExonRegion	0	2.14	3.99	0.89	0.00	0.98	2.74	0.67	0.61	0.75	9.54	1.89	2.45	0.17	4.26	0.00	1.42	3.76	3.51	0.98	0.00	3.91	1.18	5.42	5.38	6.83	1.30	2.11	1.68	2.90
53	E8_Db	NovelBoundary	0	0.00	3.97	2.47	0.00	0.00	3.64	0.00	0.00	0.00	3.36	1.33	0.00	1.27	8.06	0.00	0.00	8.55	0.00	0.00	0.00	3.37	4.38	2.31	5.62	7.24	9.44	0.00	4.13	2.74
54	I8	Intron	0	1.46	6.06	3.51	0.98	1.50	2.86	0.48	1.07	1.86	8.47	2.23	2.73	0.68	6.43	1.49	2.22	4.05	4.75	2.29	1.52	11.33	0.74	6.29	7.66	9.38	2.76	9.12	2.89	3.97
55	I8_SR1	SilentIntronRegion	0	0.00	2.88	0.00	0.00	0.00	1.43	1.05	0.00	0.58	0.75	2.48	1.60	0.68	1.42	0.00	1.29	0.78	1.17	0.00	0.00	2.97	0.00	2.82	2.24	5.21	3.27	1.91	0.85	2.08
56	I8_AR2	ActiveIntronRegion	0	0.54	4.20	0.42	0.61	0.82	4.41	0.68	0.00	1.66	7.07	1.41	2.19	0.66	3.86	0.46	1.05	1.64	2.98	5.40	1.73	8.79	0.46	3.97	4.00	3.74	1.19	2.32	1.51	1.52
57	I8_SR2	SilentIntronRegion	0	0.47	8.13	3.89	3.17	2.16	2.39	0.45	0.00	0.47	11.05	1.58	2.93	0.69	7.01	1.02	3.83	2.50	4.10	0.00	2.31	12.96	0.73	8.67	6.86	6.81	2.70	9.29	3.46	2.46
58	I8_AR3	ActiveIntronRegion	0	0.91	3.57	7.38	0.00	1.68	4.47	0.00	0.45	0.30	7.45	2.79	3.12	0.71	9.41	0.70	2.61	3.41	6.76	1.46	3.89	14.54	2.51	8.46	5.85	10.82	3.09	12.79	1.65	4.50
59	I8_SR3	SilentIntronRegion	0	3.07	2.68	4.31	2.15	2.98	2.21	0.33	2.92	1.59	9.61	2.71	3.01	0.00	9.40	0.00	4.20	7.69	4.92	1.95	1.21	15.55	0.00	7.70	7.90	11.44	1.04	5.41	1.45	2.82
60	I8_AR4	ActiveIntronRegion	0	4.05	9.64	7.80	2.53	0.75	2.84	0.97	1.33	1.70	12.65	2.21	4.40	0.45	11.33	2.43	4.15	7.56	7.78	1.12	1.82	14.95	0.32	10.59	8.45	16.77	4.02	12.64	4.42	8.55
61	I8_SR4	SilentIntronRegion	0	0.04	6.44	1.19	0.00	1.65	0.88	0.18	0.50	1.58	6.16	4.08	2.11	0.56	2.57	0.66	1.33	3.61	4.82	3.19	0.24	11.22	0.25	3.29	5.07	7.75	1.37	8.00	2.58	4.11
62	I8_AR5	ActiveIntronRegion	0	1.37	6.80	2.17	0.00	2.56	2.49	0.26	2.93	4.43	8.47	1.99	2.12	1.32	5.34	3.24	0.98	4.31	3.70	1.48	0.61	8.74	1.18	4.58	15.89	9.83	4.65	14.54	4.68	3.23
63	I8_AR6	ActiveIntronRegion	0	0.00	2.45	0.00	0.00	0.00	0.00	0.00	0.00	0.86	2.20	0.00	0.00	0.00	0.00	4.18	0.00	0.00	0.00	2.43	0.00	5.43	0.00	2.75	0.00	4.35	0.00	2.79	0.00	0.00
64	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.71	1.64	1.46	0.00	0.00	4.23	0.00	0.00	4.50	9.89	0.00	3.72	8.58	0.00	11.52	11.36	7.46	0.00	10.04	4.36	4.62
65	ER9a	ExonRegion	0	3.73	27.89	10.43	7.75	30.43	14.19	2.16	18.30	17.24	17.55	9.01	9.65	6.80	16.41	10.65	11.11	10.66	9.37	13.72	29.54	114.29	4.95	12.11	50.51	25.74	4.02	29.34	34.12	102.55
66	IG24_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.73	0.00	0.00	0.00	0.00
67	IG24_AR1	ActiveIntergenicRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	3.68	0.00	0.00	0.00	0.00	1.30	0.91	8.00	0.00	1.00	0.00	0.00	8.43	0.00	1.03	0.00	1.54	0.00	1.57	0.00	0.00	0.00
68	IG24_SR1	SilentIntergenicRegion	0	0.00	0.05	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.31	0.25	3.48	3.83	0.94	0.00	2.47	1.28	0.00	1.28	0.00	1.50	0.00	0.07	0.00	1.26	0.00