Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CCDC28A	Gene	0	122.52	189.80	125.91	194.53	117.05	174.87	325.78	150.23	193.13	135.46	179.58	187.72	128.09	147.03	414.19	118.30	124.59	76.56	220.97	469.10	163.28	225.52	92.03	190.66	222.96	100.37	132.66	114.37	169.58
2	26464	Transcript	0	0.00	0.10	0.49	0.21	1.33	0.06	0.44	0.03	0.08	0.13	0.09	0.09	0.02	0.04	0.57	0.07	0.15	0.24	0.52	0.41	0.12	0.24	0.05	0.41	0.00	0.00	0.16	0.02	0.12
3	332797	Transcript	0	115.14	250.34	138.24	220.90	99.09	258.13	381.32	118.75	238.73	159.63	228.10	207.58	134.24	144.32	463.45	155.31	135.88	74.11	326.27	583.25	198.77	265.38	77.52	237.98	276.86	65.02	104.08	95.75	159.95
4	ER1a	ExonRegion	0	0.00	0.00	1.03	0.00	2.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1b	ExonRegion	0	14.97	16.49	8.05	109.33	71.08	39.83	78.40	23.74	27.31	16.66	17.17	21.45	23.78	10.60	61.21	25.25	5.56	20.49	30.13	53.84	40.17	39.52	19.67	13.18	20.93	30.68	19.78	28.60	38.51
6	E1a_E2a	KnownJunction	0	27.25	26.66	46.74	52.20	41.12	94.84	115.52	69.57	61.64	39.87	32.46	34.73	84.80	47.48	117.80	25.93	31.56	18.49	40.46	104.70	89.09	83.57	9.31	58.56	79.07	50.51	34.19	56.12	197.59
7	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	167.17	142.83	131.37	131.48	107.63	209.58	411.13	209.82	181.24	143.40	208.33	195.03	162.68	175.97	374.40	142.77	136.44	87.22	189.43	608.74	224.41	308.90	122.00	207.25	284.51	174.40	157.85	191.22	297.38
9	E2_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2a_E3a	KnownJunction	0	229.98	233.36	481.73	535.56	362.39	194.37	341.17	194.63	130.21	131.82	252.57	216.89	148.52	227.61	422.36	169.37	144.67	93.63	372.03	786.72	196.82	297.73	73.83	288.19	338.01	125.40	191.09	138.03	197.42
11	ER3a	ExonRegion	0	211.03	248.99	281.42	428.82	271.25	213.99	422.58	214.47	169.72	177.06	256.22	245.63	149.69	218.05	460.55	158.29	146.11	96.89	280.57	744.95	208.37	349.97	128.15	267.16	383.41	118.25	145.43	130.49	187.67
12	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	1.55	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	1.64	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
13	E3a_E4a	KnownJunction	0	208.87	339.33	188.58	356.54	141.33	322.82	450.45	223.95	236.34	291.00	359.75	287.74	193.14	220.90	610.32	268.89	178.23	135.62	412.49	830.13	263.73	431.92	185.87	328.63	438.10	130.54	207.79	196.62	251.36
14	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.22	0.00	0.00	0.00	1.27	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
15	I3_SR1	SilentIntronRegion	0	2.38	0.00	0.20	0.00	4.33	1.33	0.00	0.00	0.46	1.59	0.00	0.20	0.00	0.00	0.00	0.00	1.47	1.07	1.08	0.00	7.32	0.00	1.00	0.00	1.21	0.00	0.00	1.81	0.00
16	I3_SR2	SilentIntronRegion	0	1.81	2.72	0.28	0.00	1.65	2.16	0.42	0.00	2.65	1.64	0.70	1.64	0.22	1.87	2.24	1.98	4.73	0.98	2.16	1.96	4.36	0.00	0.31	2.18	1.33	0.53	0.93	1.10	2.31
17	I3_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.71	1.50	0.00	0.00	1.07	0.00	0.39	0.00	0.00	0.00	0.00	3.29	0.00	0.00	0.00	3.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.91
18	E4_Aa	NovelBoundary	0	0.00	4.85	1.12	0.00	0.00	1.76	5.03	2.14	5.54	1.80	12.24	0.00	0.00	0.00	0.00	0.00	3.83	0.00	0.00	0.00	0.00	2.19	0.00	5.38	1.48	5.92	0.00	0.00	0.00
19	ER4a	ExonRegion	0	188.25	300.18	176.95	267.78	130.84	267.52	489.02	183.72	262.19	223.95	290.80	311.14	209.92	224.41	548.35	178.05	199.01	147.02	372.34	717.48	243.76	336.19	148.34	310.46	408.47	118.20	220.78	150.37	260.31
20	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00	0.00	0.00	1.48	0.00	3.25	1.62	1.37	0.00	0.00	0.97	0.00	8.09	0.00	0.00	0.00	1.87	2.99	1.67	0.00	10.14	2.11	1.49
21	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E4a_E6a	KnownJunction	0	173.30	355.13	216.68	324.40	145.46	379.30	570.20	185.18	388.30	237.12	319.70	302.77	207.98	216.40	737.88	234.47	205.33	112.50	541.97	888.27	298.98	438.77	102.69	364.28	421.85	93.60	141.04	139.51	258.43
23	ER5a	ExonRegion	0	0.00	0.29	0.44	0.64	1.08	0.18	1.31	0.08	0.24	0.38	0.26	0.27	0.06	0.12	1.70	0.22	0.44	0.71	1.57	1.22	0.37	0.71	0.16	1.22	0.00	0.00	0.48	0.07	0.35
24	ER6a	ExonRegion	0	169.99	389.33	189.04	330.98	151.83	393.04	562.66	163.70	322.84	241.05	364.59	318.74	193.44	210.67	627.27	230.19	200.30	108.45	432.32	843.20	290.92	356.47	129.88	344.28	403.01	101.47	162.05	140.40	216.73
25	I6	Intron	0	1.33	16.97	7.25	6.33	8.13	8.57	12.53	2.33	17.51	7.82	7.59	10.90	5.27	3.89	14.62	2.96	9.10	5.17	17.17	25.23	38.91	3.04	8.02	11.26	8.05	3.31	7.20	4.67	9.82
26	I6_SR1	SilentIntronRegion	0	0.63	17.04	3.21	7.06	4.81	5.95	11.61	1.90	8.25	5.05	5.98	8.38	3.28	1.69	10.00	1.92	6.10	4.73	17.30	17.84	28.93	0.89	5.07	5.82	4.08	2.55	4.06	2.49	6.51
27	I6_AR1	ActiveIntronRegion	0	1.95	12.42	13.13	8.16	15.01	8.60	15.14	2.52	16.07	8.55	11.52	12.00	7.81	5.20	14.55	3.95	11.55	6.65	12.37	32.82	46.10	6.98	12.56	14.94	11.72	3.40	14.14	7.24	11.70
28	I6_SR2	SilentIntronRegion	0	1.51	20.20	9.27	4.66	7.09	11.38	12.00	2.63	25.74	10.90	5.91	12.26	6.05	5.64	19.04	3.01	11.66	5.97	19.25	30.98	47.19	3.34	8.99	15.34	11.37	4.65	7.67	6.25	11.91
29	I6_AR2	ActiveIntronRegion	0	0.29	11.95	4.96	0.00	21.44	4.04	8.55	5.69	12.90	5.49	4.35	7.81	2.60	1.22	29.45	0.61	4.63	1.49	8.30	22.36	23.73	3.50	6.41	7.30	2.99	4.29	1.11	1.28	5.14
30	I6_AR3	ActiveIntronRegion	0	0.00	3.98	2.95	0.00	4.72	1.23	3.08	0.00	6.50	3.19	1.75	2.60	6.77	1.58	0.29	2.93	1.90	1.44	5.24	12.28	16.07	2.75	2.76	6.57	4.81	0.00	15.91	0.00	2.75
31	I6_AR4	ActiveIntronRegion	0	3.51	17.27	8.36	7.82	10.15	13.72	16.17	2.01	40.75	9.91	16.06	18.54	7.77	6.85	18.27	6.93	11.60	2.47	23.79	26.56	50.41	4.13	10.56	17.49	9.62	1.71	7.29	5.78	17.37
32	E7_Aa	NovelBoundary	0	6.02	40.04	17.59	0.00	7.07	15.42	28.32	5.08	43.64	19.21	24.96	33.13	9.49	11.57	52.22	17.59	12.92	0.00	72.83	7.03	31.29	2.09	9.11	25.90	5.57	0.00	2.09	7.86	10.10
33	ER7a	ExonRegion	0	141.66	279.77	149.95	193.48	109.11	219.35	401.01	195.76	303.86	180.86	230.31	253.37	163.13	193.85	633.39	147.53	178.88	89.05	307.50	566.92	194.94	264.42	108.77	255.40	247.38	117.62	179.29	136.84	191.82
34	ER7b	ExonRegion	0	2.14	6.57	8.98	7.31	0.00	2.06	11.09	7.36	5.06	0.72	0.00	1.24	1.30	5.90	25.20	1.27	2.00	1.36	4.53	18.27	6.42	0.90	0.00	5.38	5.72	0.00	9.16	7.34	4.70
35	IG42_AR1	ActiveIntergenicRegion	0	0.00	0.00	1.12	7.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00