Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SMPDL3A	Gene	0	67.37	341.31	25.61	54.01	72.66	238.50	120.20	38.52	219.93	155.27	165.93	70.95	213.00	122.47	206.41	135.09	54.67	66.69	144.06	76.58	128.97	83.24	52.45	188.09	88.99	67.85	67.16	18.32	70.73
2	368440	Transcript	0	87.62	442.43	28.68	61.16	80.46	289.93	132.30	50.84	276.38	205.80	213.77	91.51	260.44	168.22	192.19	176.86	66.56	90.39	167.73	97.10	164.65	97.23	65.11	251.93	130.99	66.09	82.97	20.40	72.99
3	487215	Transcript	0	0.39	3.40	0.00	2.91	0.00	9.01	4.38	0.50	4.57	2.67	2.78	2.17	2.11	3.70	2.61	13.55	1.03	5.91	8.85	2.05	7.06	0.66	0.59	3.69	0.80	0.01	0.50	0.43	1.44
4	IG40_AR1	ActiveIntergenicRegion	0	1.97	3.08	1.55	1.56	1.32	4.48	4.28	1.19	4.89	2.53	3.31	0.80	4.68	3.68	3.20	7.48	1.80	2.53	6.10	1.40	4.92	4.08	9.83	15.37	2.12	5.85	24.71	6.41	1.61
5	ER1a	ExonRegion	0	10.47	16.91	6.52	16.53	15.63	15.52	11.78	5.16	7.82	13.76	9.29	9.21	21.26	9.54	15.57	30.16	5.86	13.98	12.99	5.30	11.04	21.93	19.74	12.94	8.31	32.15	11.20	12.46	24.16
6	E1_Ab	KnownBoundary	0	83.29	157.16	25.89	98.79	115.24	102.63	47.55	30.61	69.46	73.58	79.28	62.08	98.62	28.45	79.93	173.73	35.47	71.54	97.11	28.04	68.91	135.55	110.42	81.95	63.50	212.77	57.80	50.59	152.75
7	ER1b	ExonRegion	0	60.51	83.29	40.71	61.89	117.28	81.64	52.07	36.54	57.08	75.07	61.81	63.61	140.56	60.68	34.01	80.88	33.11	46.53	33.10	36.54	43.50	152.64	52.03	47.31	49.11	147.62	26.04	24.00	109.61
8	E1_Da	NovelBoundary	0	0.00	4.85	1.20	0.00	0.00	1.73	0.00	0.00	1.55	0.00	0.00	0.00	1.97	2.26	9.37	20.35	1.22	0.00	0.00	0.00	0.00	0.00	7.24	2.57	0.00	5.79	12.42	2.29	0.00
9	E1a_E2a	KnownJunction	0	116.61	138.06	3.76	20.28	0.00	118.29	36.85	59.42	86.06	55.32	30.65	25.18	119.48	81.16	0.00	71.07	11.84	18.37	16.18	34.15	74.24	338.52	24.58	78.48	81.60	44.37	4.57	11.86	51.90
10	E1a_E3a	NovelJunction	0	60.81	56.52	6.10	10.57	23.58	34.68	17.91	25.88	31.91	28.04	13.25	0.00	33.18	21.67	32.29	59.82	9.07	18.49	16.18	74.43	28.04	111.09	10.83	73.03	33.49	47.38	9.39	4.58	22.35
11	I1_AR1	ActiveIntronRegion	0	0.94	0.56	0.51	0.63	0.86	1.42	0.83	0.24	0.98	0.38	1.30	0.73	0.82	1.04	0.00	4.77	1.05	1.35	1.82	0.69	4.30	1.11	2.69	1.83	0.42	4.15	4.57	3.64	0.50
12	I1_AR2	ActiveIntronRegion	0	1.10	0.00	0.27	0.00	0.00	0.45	0.00	0.00	0.68	1.30	0.00	0.03	0.86	0.86	0.00	3.38	0.38	1.80	0.41	0.35	3.16	0.00	0.00	1.65	0.18	2.41	0.00	0.00	0.00
13	E2_Aa	NovelBoundary	0	0.00	21.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.07	0.00	0.00	0.00	2.28	0.00	0.00	1.35	0.00	0.00	0.00	1.76	0.00	2.51	0.00	1.89	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	94.55	269.64	37.48	37.93	50.54	262.34	95.09	52.30	104.98	172.42	172.38	83.40	236.44	134.34	41.90	126.88	47.06	78.44	60.89	46.34	121.79	149.97	72.15	150.58	114.87	146.89	52.46	36.41	126.49
15	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	3.67	0.00	0.00	8.09	0.00	5.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	1	154.42	493.67	94.33	99.87	162.55	395.30	132.17	93.66	131.68	251.58	256.30	76.26	285.68	181.40	77.93	169.14	55.98	88.62	89.02	40.03	163.21	197.87	87.12	230.11	175.83	98.23	56.01	37.83	75.96
17	I2	Intron	0	0.32	1.14	0.00	0.00	0.00	0.52	0.15	0.28	1.59	0.65	0.18	0.09	0.00	0.47	0.00	2.93	0.67	0.29	0.24	0.21	3.21	0.14	0.00	0.96	0.11	0.00	0.69	0.73	0.10
18	I2_SR1	SilentIntronRegion	0	0.23	1.04	0.00	0.00	0.00	0.60	0.22	0.40	1.32	0.00	0.00	0.11	0.00	0.00	0.00	2.74	0.82	0.23	0.35	0.00	3.32	0.20	0.00	0.91	0.16	0.00	1.00	1.07	0.00
19	I2_AR1	ActiveIntronRegion	0	0.52	1.38	0.00	0.00	0.00	0.33	0.00	0.00	2.20	2.08	0.57	0.05	0.00	1.52	0.00	3.37	0.36	0.41	0.00	0.66	2.99	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.32
20	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	2.38	1.60	1.58	2.35	0.00	1.91	8.37	5.81	0.95	4.62	0.00	0.00	3.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	105.86	371.33	45.01	39.29	61.57	357.93	148.93	79.37	187.81	270.85	281.14	107.74	248.49	204.32	109.66	206.04	81.56	112.74	142.27	88.93	181.69	128.84	126.29	233.58	179.40	136.04	85.67	33.47	100.27
22	E3_Da	KnownBoundary	0	2.89	0.00	0.00	0.00	0.00	10.21	0.00	0.00	8.68	3.64	0.00	4.94	0.00	4.14	0.00	11.86	0.00	4.62	8.09	0.00	16.73	2.24	2.36	7.84	0.00	0.00	0.00	0.00	4.26
23	E3a_E4a	KnownJunction	0	161.44	364.92	41.66	27.61	54.67	425.73	177.37	94.85	272.79	233.60	151.24	106.75	321.66	206.01	76.74	123.85	66.33	98.51	64.74	141.66	237.33	126.60	91.90	202.83	205.60	108.49	60.88	20.22	86.13
24	E3a_E5a	NovelJunction	0	2.89	0.00	6.63	0.00	0.00	11.97	8.01	4.83	8.71	3.75	4.59	10.42	2.77	11.65	15.95	27.62	2.23	9.25	0.00	22.16	5.86	15.61	2.51	33.20	2.96	6.05	0.00	0.00	3.60
25	E3a_E6a	NovelJunction	0	0.00	0.00	1.20	0.00	0.00	12.12	0.00	7.61	3.29	1.72	7.91	0.00	0.00	5.34	8.37	10.40	2.23	4.62	0.00	20.67	0.00	0.00	0.00	16.63	3.67	0.00	4.57	2.20	5.22
26	ER3b	ExonRegion	0	0.39	3.40	0.00	2.91	0.00	9.01	4.38	0.50	4.57	2.67	2.78	2.17	2.11	3.70	2.61	13.55	1.03	5.91	8.85	2.05	7.06	0.66	0.59	3.69	0.80	0.01	0.50	0.43	1.44
27	E3_Db	NovelBoundary	0	2.54	16.38	0.00	0.00	0.00	23.40	7.67	0.00	3.90	3.71	3.13	1.39	0.00	1.95	0.00	17.29	1.31	0.00	16.18	7.11	28.20	0.00	0.00	3.05	0.00	2.06	0.00	0.00	9.57
28	I3	Intron	0	2.01	5.09	0.78	0.56	0.48	6.28	1.50	1.18	2.79	3.07	1.81	1.14	0.82	4.19	2.67	10.67	2.91	2.32	5.18	1.61	6.65	0.32	0.60	2.73	0.89	0.71	0.43	1.50	0.82
29	I3_AR1	ActiveIntronRegion	0	2.37	5.30	0.92	0.00	0.25	5.75	1.82	1.29	2.43	3.75	1.44	1.74	0.57	4.61	3.75	10.73	1.53	2.74	7.06	1.92	6.93	0.72	0.63	3.24	0.93	0.37	0.46	1.63	0.95
30	I3_SR1	SilentIntronRegion	0	0.00	3.41	0.17	0.00	0.00	1.09	0.00	0.00	0.46	1.74	0.00	0.16	0.96	1.02	0.00	1.78	0.83	0.00	4.53	0.00	1.72	0.00	0.00	0.04	0.00	0.49	0.00	0.21	0.55
31	I3_AR2	ActiveIntronRegion	0	1.06	3.17	0.71	0.00	2.08	12.24	2.36	1.08	3.85	2.62	2.83	0.40	2.67	5.05	0.00	14.38	3.89	1.27	10.72	1.62	10.32	0.26	0.56	3.08	1.78	1.45	0.01	0.72	1.17
32	I3_SR2	SilentIntronRegion	0	2.07	5.56	0.71	1.22	0.23	5.23	1.03	1.18	2.90	2.69	1.92	0.90	0.49	3.74	2.66	9.96	3.90	2.39	1.99	1.41	5.58	0.00	0.61	2.32	0.64	0.79	0.55	1.67	0.63
33	E4_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	7.06	4.81	1.99	19.40	5.55	0.00	1.54	0.00	6.18	0.00	10.48	8.26	0.00	16.18	0.00	16.08	2.04	0.00	0.00	0.00	4.94	0.00	0.00	3.86
34	ER4a	ExonRegion	0	121.80	372.82	37.07	21.79	85.76	275.46	85.31	71.06	249.79	197.51	213.14	84.61	224.47	196.29	78.58	124.48	54.41	78.08	94.90	78.90	151.12	148.35	75.65	248.03	162.58	74.63	55.44	16.15	48.01
35	E4_Da	NovelBoundary	0	8.67	7.85	0.00	0.00	0.00	3.26	0.00	0.00	4.96	3.20	0.00	1.39	0.00	7.60	0.00	23.71	6.10	4.62	8.09	0.00	13.32	0.00	0.00	0.00	0.00	1.63	0.00	0.00	0.00
36	E4a_E5a	KnownJunction	0	101.51	306.56	11.26	38.39	60.86	244.17	65.34	31.95	141.57	187.74	231.25	69.73	149.19	143.35	104.44	130.05	61.23	84.38	97.11	45.32	102.76	96.02	61.07	181.24	134.23	59.87	72.26	11.19	33.08
37	E4a_E6a	NovelJunction	0	0.00	4.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.27	1.48	0.00	0.00	0.00	3.45	1.72	0.00	0.00	0.00
38	I4	Intron	0	1.67	4.67	1.30	0.65	1.17	6.45	1.52	2.16	7.85	4.34	1.86	1.78	0.80	5.06	9.54	15.02	4.04	2.64	4.61	1.41	8.58	0.27	0.54	9.25	1.76	1.13	0.39	1.42	1.13
39	I4_SR1	SilentIntronRegion	0	0.00	3.60	0.57	2.09	0.00	4.36	2.78	3.62	3.62	2.25	0.96	1.67	0.00	4.10	3.56	7.39	1.32	10.96	1.36	0.00	5.77	0.00	0.00	3.59	0.57	0.15	0.00	0.78	0.00
40	I4_AR1	ActiveIntronRegion	0	1.27	2.15	0.51	0.55	0.58	7.19	0.31	1.44	5.20	6.02	2.55	0.86	0.61	4.83	5.93	6.42	2.29	1.90	2.46	1.64	8.14	0.00	0.00	4.59	2.29	0.91	1.52	1.44	1.03
41	I4_SR2	SilentIntronRegion	0	2.30	3.85	1.45	0.00	0.65	4.28	2.62	2.49	6.92	3.85	1.59	1.96	0.63	5.61	6.82	16.85	3.70	2.11	4.04	0.37	8.09	0.00	0.73	11.53	1.72	1.39	0.00	0.75	0.63
42	I4_AR2	ActiveIntronRegion	0	1.12	9.35	2.89	0.05	0.83	4.11	2.52	2.05	9.62	3.77	1.15	2.02	1.79	5.40	11.36	22.40	4.67	2.19	6.10	2.39	7.09	1.00	0.59	13.68	2.20	1.88	0.00	1.59	0.45
43	I4_SR3	SilentIntronRegion	0	0.41	5.42	1.01	1.26	2.38	8.30	0.96	3.04	9.73	2.83	1.53	3.07	0.32	5.00	17.45	20.48	7.93	2.63	6.10	2.37	9.20	0.19	0.80	9.94	0.99	0.86	0.00	2.71	2.13
44	I4_AR3	ActiveIntronRegion	0	4.15	3.74	0.96	1.59	2.49	10.20	0.89	1.63	10.87	5.22	2.64	1.37	0.86	4.47	10.45	13.57	3.07	3.24	6.67	0.61	12.34	0.40	1.04	8.91	1.52	0.70	0.00	0.89	2.15
45	E5_Aa	NovelBoundary	0	0.00	4.07	0.00	0.00	0.00	1.53	7.61	0.00	11.21	0.00	5.57	1.36	0.00	4.39	26.51	14.61	1.13	9.25	0.00	0.00	7.58	0.00	0.00	0.00	0.00	0.00	0.00	1.80	1.58
46	ER5a	ExonRegion	0	135.34	497.64	54.59	107.97	155.75	388.90	171.55	74.68	329.66	327.76	306.12	131.21	351.21	246.37	164.03	230.71	102.70	111.66	201.03	147.38	217.56	137.57	118.38	326.25	207.27	117.41	115.33	32.83	123.91
47	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	5.63	0.00	1.42	0.00	0.00	3.86	7.57	0.00	1.40	0.00	8.09	0.00	4.01	0.00	0.00	11.07	0.00	0.00	0.00	0.00	0.00
48	E5a_E6a	KnownJunction	0	87.53	422.99	42.78	42.71	47.16	283.50	124.79	42.55	222.00	216.94	255.16	105.42	248.00	203.82	176.20	242.96	56.63	108.40	186.13	117.68	182.58	85.03	51.71	292.80	119.15	55.87	110.03	22.20	66.42
49	I5	Intron	0	1.18	0.00	0.18	0.00	0.00	1.66	0.22	0.81	3.07	0.48	0.00	0.41	0.14	0.55	1.20	2.18	0.49	0.21	1.40	0.91	0.63	0.00	0.20	2.36	0.16	0.34	0.00	0.00	0.00
50	I5_SR1	SilentIntronRegion	0	1.40	0.00	0.27	0.00	0.00	2.02	0.00	1.20	3.94	0.47	0.00	0.20	0.00	0.67	1.80	1.62	0.49	0.31	1.04	1.35	0.47	0.00	0.30	3.16	0.23	0.00	0.00	0.00	0.00
51	E6_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.11	0.00	0.00	4.25	0.00	1.86	0.00	7.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	2.15	0.00	3.59	0.00
52	ER6a	ExonRegion	0	87.56	642.55	44.16	73.41	130.46	336.35	153.10	50.38	306.44	260.08	278.49	117.87	306.15	203.54	208.86	228.28	78.91	108.07	249.52	131.57	199.22	91.53	67.10	328.27	154.16	71.49	127.34	24.52	86.71
53	E6_Da	NovelBoundary	1	6.02	0.00	0.00	0.00	0.00	3.91	0.00	0.00	8.95	2.04	6.45	4.43	0.00	3.30	0.00	0.00	0.92	0.00	0.00	0.00	11.87	0.00	0.00	9.03	0.00	2.19	0.00	15.68	1.98
54	E6a_E7a	KnownJunction	0	40.88	456.05	20.48	96.85	63.66	264.89	137.26	42.10	346.12	222.38	225.11	85.60	340.83	150.00	222.64	217.33	83.08	103.90	178.03	89.81	144.96	93.15	72.74	254.87	127.86	53.69	81.75	24.26	83.29
55	E6a_E8a	NovelJunction	0	5.19	8.73	0.00	0.00	0.00	18.11	13.33	0.00	42.45	7.35	30.75	3.92	6.24	10.26	0.00	11.17	2.21	4.62	8.09	0.00	30.60	2.09	2.51	15.55	3.33	4.38	26.84	0.00	0.00
56	I6	Intron	0	0.17	1.40	0.13	0.00	0.00	1.76	0.97	0.88	4.31	0.58	0.29	0.15	0.00	1.70	4.78	3.72	0.60	0.64	4.86	0.00	5.25	0.00	0.00	3.96	0.69	0.00	0.00	1.17	0.64
57	I6_SR1	SilentIntronRegion	0	0.17	1.41	0.13	0.00	0.00	1.77	0.97	0.89	4.32	0.58	0.29	0.15	0.00	1.71	4.80	3.73	0.60	0.64	4.88	0.00	5.27	0.00	0.00	3.97	0.69	0.00	0.00	1.18	0.64
58	E7_Aa	NovelBoundary	0	0.00	9.70	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	8.17	0.00	3.78	0.00	0.00	0.00	5.70	0.00	0.00	5.44	0.00	0.00	0.00	0.00	0.00
59	ER7a	ExonRegion	0	83.29	683.52	26.93	88.75	105.49	313.96	155.84	51.74	365.71	214.29	238.35	93.11	331.38	180.89	260.32	224.63	78.58	99.36	232.59	100.31	164.74	105.02	68.16	323.00	125.96	57.97	111.66	20.34	97.97
60	E7_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	4.66	3.91	0.00	1.45	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	15.32	0.00	0.00	8.85	0.00	0.00	0.00	2.29	0.00
61	E7a_E8a	KnownJunction	0	67.42	611.95	12.98	82.18	87.54	305.02	167.47	61.31	406.72	221.66	242.32	125.96	280.42	181.26	297.78	232.63	70.68	116.10	275.14	97.01	216.60	102.53	52.20	342.56	126.61	57.12	74.50	26.91	88.74
62	I7	Intron	0	0.60	1.89	0.07	0.00	0.59	0.93	0.24	0.07	2.08	0.75	1.57	0.37	0.00	0.81	2.02	1.95	0.54	0.77	2.55	1.10	3.42	0.00	0.22	5.50	0.29	0.31	0.73	0.20	0.27
63	I7_SR1	SilentIntronRegion	0	0.65	1.77	0.07	0.00	0.63	1.01	0.26	0.08	2.09	0.56	1.70	0.35	0.00	0.76	2.19	2.12	0.58	0.83	2.63	1.19	3.64	0.00	0.23	5.68	0.31	0.07	0.79	0.21	0.29
64	I7_AR1	ActiveIntronRegion	0	0.00	3.39	0.00	0.00	0.00	0.00	0.00	0.00	2.06	3.04	0.00	0.65	0.00	1.43	0.00	0.00	0.00	0.00	1.68	0.00	0.75	0.00	0.00	3.39	0.00	3.31	0.00	0.00	0.00
65	E8_Aa	NovelBoundary	0	3.01	12.41	0.00	0.00	0.00	1.92	0.00	0.00	2.98	3.71	0.00	0.00	1.62	2.92	0.00	9.79	3.74	0.00	0.00	4.13	3.65	0.00	0.00	2.75	0.00	0.00	0.00	4.49	0.00
66	ER8a	ExonRegion	1	66.58	490.79	16.99	76.61	78.04	335.75	205.55	33.42	391.58	168.06	201.05	77.17	290.29	129.33	508.91	160.34	73.75	71.82	252.81	113.11	183.19	61.78	37.59	258.45	69.13	38.37	92.25	13.29	64.44