Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GTF3C6	Gene	0	160.65	611.22	232.98	538.70	426.95	389.98	400.43	176.53	678.06	451.06	584.16	433.24	422.98	187.34	315.02	290.08	184.37	260.39	1046.45	162.70	420.11	237.31	318.76	317.41	436.15	134.77	331.53	300.75	320.87
2	329970	Transcript	0	70.01	182.38	665.80	776.80	366.25	151.79	251.35	170.23	204.97	155.93	263.53	292.13	293.66	97.18	155.94	110.85	123.58	107.09	295.79	70.46	182.54	135.67	224.51	96.28	196.90	176.69	303.02	326.20	369.68
3	480191	Transcript	0	0.00	2.21	3.44	6.25	63.74	3.09	1.63	1.69	2.90	2.15	1.14	0.73	2.31	0.93	0.00	0.61	1.30	0.08	14.89	0.04	4.46	0.48	3.24	0.97	4.23	1.41	1.56	5.35	4.27
4	IG31_AR1	ActiveIntergenicRegion	0	2.05	0.00	0.00	0.00	20.55	1.20	0.59	0.00	2.20	2.77	0.74	0.26	0.00	0.00	0.00	0.00	0.00	2.16	0.00	0.00	0.00	5.26	2.71	1.43	0.00	0.00	0.00	0.00	0.78
5	ER1a	ExonRegion	0	48.54	100.09	198.91	685.01	420.67	119.04	187.51	82.57	95.07	124.23	145.35	182.67	143.07	45.83	76.88	133.87	76.58	111.69	219.55	46.56	148.48	69.58	203.91	44.16	86.96	104.92	152.04	228.47	155.84
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
7	E1a_E3a	KnownJunction	0	91.49	264.67	1132.68	868.59	311.84	184.55	315.20	257.89	314.88	187.62	381.70	401.59	444.26	148.54	235.00	87.82	170.58	102.49	372.03	94.36	216.60	201.76	245.12	148.40	306.83	248.47	453.99	423.93	583.51
8	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	2.65	0.00	8.97	0.00	21.22	1.80	8.64	0.00	2.68	1.56	1.49	3.25	0.00	1.06	0.00	3.82	0.00	5.27	8.09	0.00	3.73	2.48	6.99	2.45	0.00	0.00	0.00	2.29	0.00
10	ER2a	ExonRegion	0	0.00	4.43	2.76	2.80	43.92	6.18	3.26	3.38	2.47	0.58	2.28	1.45	1.56	1.85	0.00	1.21	1.53	0.17	5.51	0.07	5.04	0.96	1.65	1.95	5.05	2.82	1.08	1.98	2.67
11	E2_Da	NovelBoundary	0	0.00	0.00	1.47	0.00	0.00	1.42	0.00	0.00	0.00	1.72	0.00	1.66	2.74	0.00	0.00	3.60	2.68	0.00	0.00	0.00	4.09	0.00	0.00	0.00	1.70	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	4.11	9.71	83.56	0.00	0.00	0.00	3.32	3.71	0.00	0.00	3.06	0.00	0.00	0.00	1.06	0.00	24.28	0.00	3.89	0.00	4.83	0.00	3.41	0.00	2.04	8.72	5.88
13	I2	Intron	0	5.08	1.27	7.27	5.67	32.86	13.04	5.58	3.64	2.88	5.71	3.29	0.49	0.00	1.79	13.81	5.89	2.95	17.90	15.16	2.18	11.28	4.99	4.29	0.85	5.09	1.24	16.65	1.93	14.55
14	I2_AR1	ActiveIntronRegion	0	5.16	1.29	7.39	5.76	33.38	13.25	5.67	3.70	2.93	5.80	3.35	0.50	0.00	1.81	14.02	5.98	3.00	18.16	15.39	2.21	11.46	5.07	4.36	0.86	5.17	1.26	16.92	1.96	14.75
15	E3_Aa	NovelBoundary	0	15.99	0.00	19.53	17.47	38.91	21.45	5.26	6.32	3.05	5.23	6.04	1.45	5.38	2.19	26.71	6.88	9.63	47.01	24.28	0.00	19.73	4.96	2.12	0.00	19.66	1.93	9.00	3.55	8.52
16	ER3a	ExonRegion	0	194.87	385.67	503.98	341.80	345.39	411.74	293.95	264.91	476.59	291.59	360.81	333.61	385.82	169.09	220.43	211.21	144.90	170.49	641.89	163.64	428.48	303.39	227.24	306.95	345.99	136.40	256.46	237.16	387.87
17	E3_Da	NovelBoundary	0	5.49	0.00	0.00	0.00	0.00	0.00	0.00	2.44	2.68	1.84	0.00	1.66	0.00	1.37	0.00	0.00	1.24	0.00	16.18	0.00	0.00	0.00	0.00	5.26	1.67	0.00	0.00	0.00	0.00
18	E3a_E4a	KnownJunction	0	293.45	531.09	109.35	176.87	176.26	506.03	327.15	327.36	555.85	446.35	423.97	450.08	397.39	186.76	347.41	477.66	165.58	352.28	995.37	255.79	526.33	386.56	404.34	402.26	413.59	151.01	265.33	240.97	276.72
19	E3a_E6a	NovelJunction	0	0.00	4.75	0.00	0.00	0.00	1.96	2.92	0.00	0.00	0.00	0.00	1.87	4.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.65	0.00
20	I3	Intron	0	2.03	2.62	0.43	0.62	0.84	1.54	1.22	0.48	2.37	1.00	1.34	2.29	0.11	0.55	1.19	1.38	2.19	1.66	8.27	0.41	1.85	0.31	0.16	0.93	1.85	0.68	0.47	2.67	0.52
21	I3_AR1	ActiveIntronRegion	0	3.27	0.00	0.40	0.00	0.00	2.51	1.49	0.37	4.13	1.17	0.69	2.56	0.26	0.51	1.87	1.76	2.85	2.11	7.79	0.96	1.16	0.00	0.00	1.43	0.87	0.00	0.00	3.18	0.81
22	I3_SR1	SilentIntronRegion	0	1.13	4.59	0.46	1.08	1.47	0.83	1.02	0.56	1.07	0.87	1.82	2.10	0.00	0.58	0.70	1.10	1.71	1.34	8.68	0.00	2.37	0.54	0.27	0.56	2.59	1.19	0.83	2.31	0.30
23	E4_Aa	NovelBoundary	0	2.77	4.56	1.35	21.57	0.00	0.00	0.00	2.19	2.44	1.88	4.75	1.54	0.00	1.09	0.00	0.00	4.61	0.00	8.09	0.00	3.21	0.00	0.00	5.14	4.74	0.00	0.00	0.00	0.00
24	ER4a	ExonRegion	0	239.90	705.13	136.00	150.59	218.95	605.78	861.01	421.00	834.46	892.30	991.27	846.38	733.17	278.19	533.20	635.89	368.76	515.00	1363.76	233.59	752.28	359.51	725.93	389.02	680.81	388.22	380.27	589.36	631.03
25	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.76	2.69	0.00	0.00	0.00	6.45	3.07	0.00	0.00	0.00	0.00	1.04	4.62	15.96	0.00	0.00	0.00	0.00	2.27	0.00	1.97	0.00	17.25	0.00
26	E4a_E5a	KnownJunction	0	217.89	877.89	120.24	260.99	411.61	693.30	1377.45	394.49	1125.19	1213.07	1494.45	1038.44	919.41	352.84	983.64	733.01	454.12	1018.58	2264.99	205.18	930.48	295.64	982.53	367.39	967.10	597.67	677.82	1071.80	949.90
27	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	0.00	0.00	0.00	1.87	3.98	1.09	18.34	0.00	0.00	4.62	8.09	0.00	1.52	0.00	2.51	0.00	0.00	0.00	0.00	0.00	0.00
28	I4	Intron	0	0.00	1.26	0.00	0.00	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00
29	I4_SR1	SilentIntronRegion	0	0.00	1.30	0.00	0.00	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	0.00
30	E5_Aa	NovelBoundary	0	5.25	0.00	0.00	0.00	0.00	0.00	2.12	3.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.21	0.00	16.18	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	5.62	0.00
31	ER5a	ExonRegion	0	270.94	1130.23	148.76	369.05	609.63	843.25	1016.48	366.66	1318.61	950.00	1487.42	1052.34	1046.60	364.94	669.96	542.19	468.96	579.49	1991.57	338.59	966.87	397.76	836.82	528.37	1021.12	515.53	1090.45	1112.05	1140.96
32	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	1.33	4.62	0.00	0.00	1.93	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
33	E5a_E6a	KnownJunction	0	285.19	1276.35	143.26	522.62	970.15	865.80	957.66	280.08	1310.13	816.01	1214.70	861.37	882.41	317.46	523.61	450.73	384.03	288.45	1990.07	384.30	984.23	470.52	683.59	747.63	918.15	341.68	1443.12	1148.31	1155.51
34	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.10	0.00	0.00	1.25	0.00	0.00	0.00	0.00	0.00	8.37	0.00	0.00	4.62	8.09	4.13	0.00	0.00	0.00	2.99	1.93	0.00	0.00	0.00	0.00
36	ER6a	ExonRegion	0	327.88	1258.67	653.66	798.17	805.92	815.80	660.95	329.05	1199.67	894.18	1245.52	812.89	792.38	366.07	576.52	502.70	351.14	452.35	1956.94	311.76	791.28	487.37	535.50	680.80	906.05	183.08	843.52	520.81	569.27
37	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.53	0.00	0.00	0.00	4.07	0.00	0.00	0.00	0.00	0.00	3.37	2.70	0.00	8.09	0.00	8.18	0.00	1.97	0.00	0.00	1.97	0.00	0.00	5.25
38	E6a_E7a	KnownJunction	0	317.28	1260.06	1274.25	1301.92	649.47	587.68	570.72	294.37	1359.61	985.42	1284.59	818.75	769.77	429.37	606.33	581.08	381.44	503.83	2216.44	290.19	622.03	315.72	541.06	614.31	779.41	136.42	500.26	303.47	458.62
39	I6	Intron	0	1.04	1.57	1.09	1.16	0.00	3.35	0.98	1.20	2.46	2.11	2.13	3.81	0.84	0.73	3.14	1.61	2.67	2.19	3.11	0.77	2.32	0.00	0.29	0.70	1.86	0.77	0.59	0.79	1.52
40	I6_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	4.00	0.79	1.32	1.83	3.73	0.85	4.38	0.71	0.49	2.44	1.65	5.90	0.00	5.51	2.81	0.93	0.00	0.00	1.73	0.00	2.66	3.03	1.10	1.20
41	I6_SR2	SilentIntronRegion	0	1.26	1.89	1.31	1.40	0.00	3.15	1.01	1.18	2.57	1.77	2.38	3.66	0.87	0.78	3.26	1.61	2.03	2.64	2.71	0.39	2.55	0.00	0.35	0.50	2.19	0.38	0.13	0.74	1.59
42	I6	Intron	0	0.48	4.12	0.25	3.50	0.37	2.38	0.23	0.28	4.31	1.79	0.67	1.32	0.22	0.48	2.38	1.60	2.41	1.98	6.60	0.80	2.04	0.20	0.27	1.70	1.24	0.53	0.83	0.92	0.63
43	I6_SR1	SilentIntronRegion	0	0.49	4.19	0.26	3.57	0.37	2.42	0.23	0.28	4.39	1.82	0.68	1.34	0.22	0.48	2.42	1.63	2.46	2.01	6.72	0.81	2.07	0.21	0.28	1.73	1.26	0.54	0.84	0.94	0.64
44	E7_Aa	NovelBoundary	0	0.00	13.86	1.40	0.00	0.00	0.00	5.44	0.00	1.46	3.56	1.39	1.45	0.00	0.00	0.00	3.06	3.33	9.25	8.09	0.00	3.57	0.00	0.00	5.26	5.80	0.00	0.00	1.84	1.55
45	ER7a	ExonRegion	0	204.05	929.72	169.09	647.39	464.28	473.87	464.08	166.70	1075.36	584.33	741.83	504.25	517.94	256.67	440.29	352.01	209.01	324.36	1588.77	215.69	502.54	297.84	319.98	460.66	579.36	93.17	321.99	244.96	295.04
46	IG32_AR1	ActiveIntergenicRegion	0	0.00	2.34	0.00	0.00	0.00	2.54	0.00	0.00	0.93	1.06	2.24	4.83	0.65	0.00	0.00	0.00	0.37	0.00	12.88	7.62	2.88	0.00	0.00	3.97	4.73	1.06	0.00	1.63	0.52
47	IG32_SR1	SilentIntergenicRegion	0	0.00	6.14	0.00	0.00	0.00	2.80	1.94	0.00	1.25	1.74	1.24	1.21	0.61	0.87	5.28	2.39	1.08	0.00	27.24	0.48	2.66	0.00	0.00	2.31	3.61	0.47	0.00	3.11	2.08
48	IG32_SR3	SilentIntergenicRegion	0	0.91	5.26	0.79	4.57	1.60	4.11	1.70	4.22	5.20	2.22	3.07	2.32	1.81	1.07	3.89	1.82	1.91	1.50	12.86	1.39	5.89	0.27	0.98	3.44	2.69	1.05	1.31	2.30	1.63
49	IG32_AR3	ActiveIntergenicRegion	0	0.63	2.06	1.29	2.78	0.52	3.03	1.44	0.23	6.21	0.55	0.33	1.31	1.24	0.85	2.76	1.29	2.87	1.23	3.42	1.46	1.75	0.00	0.35	1.47	0.74	0.78	0.00	0.97	0.21