Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-398K22.1	Gene	0	4.46	5.31	3.62	7.30	3.44	7.01	4.98	3.03	6.69	10.17	3.33	8.16	2.43	4.73	11.75	7.76	10.38	7.63	13.77	4.52	9.80	2.88	3.85	7.97	4.73	5.02	4.40	6.85	4.78
2	442007	Transcript	0	6.00	4.16	7.36	17.47	9.27	7.89	14.69	7.08	3.49	8.71	5.58	14.21	3.13	3.05	8.46	5.78	7.93	10.28	23.17	10.32	11.82	3.00	6.34	5.43	4.96	9.50	5.02	10.60	5.25
3	441363	Transcript	0	1.28	1.75	1.85	1.79	1.17	3.50	0.85	0.80	2.81	4.19	1.68	5.87	1.53	2.43	3.69	4.63	6.22	1.81	4.76	7.24	7.61	1.92	2.32	4.37	2.53	2.58	3.07	3.21	3.74
4	421315	Transcript	0	2.73	4.64	3.90	7.06	4.16	7.32	11.89	4.46	2.73	10.89	7.13	8.07	2.26	4.09	14.51	8.01	7.77	7.27	15.98	5.91	9.86	2.43	3.07	6.49	5.75	4.97	1.60	9.30	4.07
5	ER1a	ExonRegion	0	7.42	5.66	10.36	37.22	8.59	9.78	12.25	2.77	1.38	11.53	4.19	13.44	4.79	3.06	11.78	10.93	9.92	8.92	29.22	11.63	9.79	4.50	7.23	0.76	6.16	11.42	5.80	14.33	4.12
6	E1_Ab	KnownBoundary	0	2.36	0.00	3.46	9.49	0.00	6.60	8.12	3.98	0.00	3.12	0.00	5.42	0.00	1.35	0.00	11.47	7.05	0.00	0.00	0.00	7.66	0.00	4.38	0.00	3.33	4.29	0.00	0.00	3.07
7	ER1b	ExonRegion	0	1.92	0.23	3.92	11.55	5.77	2.41	6.51	6.46	1.26	5.42	1.19	12.13	0.46	1.70	8.74	5.51	6.87	5.99	22.87	3.40	6.38	4.55	2.44	1.55	4.24	2.51	4.66	2.09	3.08
8	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	2.83	0.00	0.00	2.23	0.00	0.00	0.00	9.79	0.00	9.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E2b	KnownJunction	0	2.30	0.00	3.84	10.78	14.00	1.57	7.32	4.28	1.34	3.87	4.46	15.06	1.46	0.00	0.00	0.00	3.06	9.25	0.00	3.80	3.89	1.90	1.82	5.56	1.59	2.19	0.00	4.00	3.66
10	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E1a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.00	0.00	0.00	1.40	0.00	0.00	10.83	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52
12	Ix	Intron	0	3.48	3.96	2.22	7.11	2.75	5.36	3.45	0.91	4.01	8.01	2.84	5.15	0.99	2.60	8.51	8.82	13.09	12.87	11.52	1.30	11.25	0.57	1.43	3.15	3.87	1.70	3.30	5.66	3.22
13	Ix_AR1	ActiveIntronRegion	0	3.25	2.05	2.30	5.47	0.53	4.64	3.44	1.05	2.29	6.97	1.72	4.46	0.78	2.59	6.75	8.00	11.14	11.14	6.97	1.12	9.55	0.10	1.97	2.02	2.86	1.20	1.60	4.86	1.40
14	Ix_AR2	ActiveIntronRegion	0	6.30	6.57	1.19	7.31	0.00	2.43	2.02	3.68	0.00	4.50	4.76	6.91	0.00	2.51	9.22	5.36	22.80	12.20	5.06	0.00	9.98	0.00	1.06	5.06	1.26	0.00	3.88	8.34	7.26
15	Ix_SR1	SilentIntronRegion	0	8.21	5.31	3.47	7.29	2.61	5.67	2.57	1.39	7.70	13.38	3.85	7.41	0.23	3.12	15.23	13.14	20.17	16.79	13.97	1.67	12.26	2.55	1.36	3.63	6.47	0.75	5.97	6.40	6.83
16	Ix_AR3	ActiveIntronRegion	0	1.61	4.61	1.93	5.87	5.14	6.37	1.03	0.00	4.68	6.72	2.37	5.13	2.03	2.51	9.24	9.60	15.57	12.58	16.56	0.06	14.95	0.29	1.15	3.50	2.76	1.75	3.95	6.33	5.73
17	Ix_SR2	SilentIntronRegion	0	2.31	5.64	1.67	9.94	4.89	5.83	5.12	0.85	4.45	7.56	4.13	4.98	1.20	2.40	7.36	7.59	10.93	13.56	14.52	2.00	11.43	0.42	0.84	4.31	4.62	2.91	4.09	6.03	2.73
18	E2_Aa	NovelBoundary	0	5.66	0.00	3.84	10.78	7.37	1.61	5.15	4.88	3.81	3.52	4.84	0.00	1.78	0.93	7.77	3.44	26.76	9.38	24.28	3.47	2.05	0.00	0.00	5.68	0.00	6.05	0.00	15.10	5.28
19	ER2a	ExonRegion	0	5.54	7.20	2.87	7.95	2.97	6.55	2.91	2.43	9.08	11.30	2.09	4.44	1.34	5.72	13.95	6.60	12.21	11.18	12.63	1.89	9.18	1.91	2.76	9.60	3.79	3.11	2.27	6.67	4.04
20	E2_Ab	KnownBoundary	0	2.06	4.65	6.95	31.06	0.00	3.34	4.69	5.87	14.07	21.37	3.95	4.70	1.15	3.55	16.74	18.28	19.63	18.49	32.15	16.54	27.15	3.50	10.10	12.08	2.73	7.68	13.02	11.73	4.13
21	ER2b	ExonRegion	0	12.55	18.23	3.65	15.87	3.71	23.75	29.70	9.39	7.20	27.06	8.96	24.79	11.20	9.97	21.53	19.72	24.24	15.57	62.98	24.71	29.83	7.46	12.14	18.56	9.04	17.53	23.50	15.47	8.70
22	E2_Da	NovelBoundary	0	2.60	4.46	0.00	0.00	0.00	5.72	0.00	0.00	7.16	7.23	0.00	1.33	0.00	1.24	0.00	0.00	4.97	4.62	16.18	0.00	9.39	0.00	2.02	5.62	0.00	0.00	0.00	0.00	3.99
23	E2a_E3a	KnownJunction	0	5.78	4.75	8.60	8.84	6.63	10.40	27.06	13.24	1.55	5.59	8.16	17.08	2.99	5.14	0.00	3.21	11.61	9.25	40.46	15.80	19.69	2.48	11.52	8.37	5.00	15.92	9.74	14.33	8.35
24	E2a_E4a	KnownJunction	0	0.00	3.49	0.00	0.00	0.00	1.96	5.72	0.00	0.00	1.60	0.00	4.07	3.25	4.41	0.00	3.82	5.11	4.62	0.00	0.00	1.56	0.00	0.00	2.51	1.82	0.00	0.00	2.11	2.05
25	E2a_E5a	NovelJunction	0	0.00	4.46	1.54	0.00	0.00	10.74	11.90	4.03	0.00	7.99	13.19	11.42	2.64	5.10	18.34	3.82	6.08	0.00	16.18	4.13	3.65	2.04	0.00	5.68	1.55	0.00	2.24	5.84	0.00
26	E2a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.99	0.00	4.13	1.62	5.76	8.37	2.91	1.98	0.00	8.09	0.00	9.23	2.33	4.24	0.00	1.70	0.00	0.00	0.00	4.89
27	Ix	Intron	0	1.03	1.55	0.00	1.38	1.41	0.79	0.19	0.00	2.11	2.50	0.00	0.24	0.75	0.17	2.30	0.72	0.72	1.67	6.76	0.27	3.16	0.00	0.52	0.41	0.41	0.45	0.00	2.19	0.00
28	Ix_SR1	SilentIntronRegion	0	1.03	1.55	0.00	1.38	1.41	0.80	0.19	0.00	2.11	2.51	0.00	0.24	0.75	0.17	2.31	0.72	0.72	1.67	6.78	0.27	3.16	0.00	0.52	0.41	0.41	0.45	0.00	2.20	0.00
29	Ix	Intron	0	1.56	0.78	2.84	6.96	9.49	2.67	2.94	0.89	5.71	9.12	0.87	7.19	0.79	1.54	6.93	4.82	10.51	2.89	10.86	2.01	6.58	1.31	1.76	2.09	1.74	0.76	3.56	3.56	1.63
30	Ix_SR1	SilentIntronRegion	0	1.58	0.79	2.87	7.03	9.58	2.70	2.96	0.90	5.77	9.21	0.88	7.25	0.79	1.55	7.00	4.87	10.61	2.91	10.97	2.03	6.65	1.33	1.77	2.11	1.75	0.77	3.59	3.60	1.65
31	E3_Aa	NovelBoundary	0	6.02	0.00	0.00	0.00	0.00	0.00	2.35	0.00	10.20	16.98	0.00	2.62	0.00	1.13	0.00	0.00	6.53	0.00	16.18	8.27	5.25	0.00	0.00	0.00	0.00	0.00	0.00	4.58	0.00
32	ER3a	ExonRegion	0	8.49	6.22	6.63	13.05	7.85	9.80	12.13	8.02	9.68	13.84	5.49	11.24	3.27	4.01	22.05	9.00	7.13	13.69	23.00	10.05	13.92	3.13	4.78	7.01	7.07	8.46	4.53	9.75	4.85
33	E3_Da	NovelBoundary	0	5.25	4.07	5.08	18.55	11.94	3.07	7.95	0.00	10.29	5.15	6.11	12.11	0.00	2.70	27.31	3.75	9.77	5.39	24.05	0.00	9.02	0.00	0.00	2.93	4.85	0.00	4.97	0.00	5.35
34	Ix	Intron	0	1.75	3.97	0.61	2.17	2.37	5.79	2.44	1.39	3.73	5.12	2.23	2.76	0.49	1.14	9.85	2.86	3.80	3.14	11.61	2.14	6.95	0.22	0.93	2.35	1.69	1.09	2.05	1.38	1.76
35	Ix_AR1	ActiveIntronRegion	0	3.88	4.27	1.07	3.67	4.38	7.67	4.76	4.57	3.87	6.49	6.76	5.46	0.77	1.80	16.20	4.40	3.87	5.53	19.56	4.38	10.00	0.00	2.43	3.61	2.49	2.22	5.23	1.90	4.11
36	Ix_SR2	SilentIntronRegion	0	1.10	3.87	0.46	1.71	1.74	5.20	1.73	0.41	3.69	4.69	0.83	1.93	0.41	0.93	7.89	2.38	3.77	2.40	9.15	1.44	6.01	0.29	0.47	1.95	1.44	0.75	1.07	1.22	1.03
37	E4_Aa	NovelBoundary	0	0.00	0.00	2.09	0.00	7.22	3.22	15.79	0.00	4.02	11.18	8.92	9.46	4.49	2.50	9.37	7.65	15.17	0.00	16.18	0.00	13.16	1.80	9.16	5.44	5.19	5.11	0.00	3.68	8.68
38	ER4a	ExonRegion	0	3.56	6.36	5.32	3.80	1.16	10.80	15.05	9.25	2.85	12.75	8.25	10.67	3.86	4.51	17.97	12.39	7.70	9.57	17.57	11.61	15.80	2.11	3.36	10.09	8.33	10.70	3.54	12.13	4.95
39	E4_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	7.37	1.57	0.00	0.00	4.75	3.71	0.00	0.00	1.66	0.00	16.34	0.00	4.14	0.00	8.09	4.05	0.00	1.94	0.00	0.00	5.19	4.03	0.00	0.00	3.20
40	E4a_E5a	KnownJunction	0	3.01	3.78	9.92	19.41	13.71	14.73	28.21	8.11	0.00	23.01	21.80	15.21	1.62	3.92	34.08	14.38	9.32	9.25	40.46	11.58	17.49	6.51	7.14	8.55	11.78	7.60	0.00	22.51	6.34
41	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	3.82	1.33	0.00	0.00	3.31	3.81	2.09	0.00	8.97	5.57	0.00	9.54	0.00	1.35
42	Ix	Intron	0	1.49	1.40	0.65	0.93	2.55	2.63	1.23	0.88	3.82	5.64	0.41	2.52	0.42	0.45	5.03	1.99	3.89	1.00	8.47	0.36	4.96	0.86	0.47	2.06	1.55	1.09	2.07	2.76	2.36
43	Ix_SR1	SilentIntronRegion	0	1.53	1.06	0.63	1.02	2.32	2.67	1.05	0.96	4.12	6.03	0.45	2.75	0.46	0.49	4.53	2.17	4.18	1.01	8.49	0.39	5.14	0.86	0.51	2.25	1.56	1.19	2.17	2.40	2.45
44	Ix_AR1	ActiveIntronRegion	0	1.13	5.08	0.88	0.00	5.14	2.17	3.18	0.00	0.59	1.52	0.00	0.00	0.00	0.00	10.62	0.00	0.78	1.01	8.40	0.00	3.00	0.95	0.00	0.00	1.50	0.00	0.96	6.86	1.41
45	E5_Aa	NovelBoundary	0	0.00	8.53	1.37	0.00	0.00	1.92	5.32	9.80	4.29	3.75	3.04	6.33	2.99	1.37	7.77	3.21	6.24	4.62	16.18	0.00	5.29	0.00	9.01	8.79	0.00	0.00	2.44	10.65	4.42
46	ER5a	ExonRegion	0	1.55	2.36	1.39	4.16	2.97	2.57	7.58	2.49	1.74	5.82	3.50	5.94	1.22	1.89	6.52	2.85	4.49	1.74	9.23	4.49	5.26	1.62	2.08	1.73	3.04	3.44	2.20	3.08	3.00
47	E5_Da	NovelBoundary	0	8.26	0.00	2.99	39.47	0.00	10.97	6.92	7.46	17.05	11.38	0.00	19.10	2.93	7.40	7.77	15.61	11.93	10.02	32.37	11.00	14.52	11.38	9.70	14.18	7.73	5.92	6.41	8.40	1.65
48	Ix	Intron	0	4.35	5.75	2.35	12.30	1.52	10.72	10.06	2.58	6.03	8.78	6.31	5.78	4.04	2.68	17.50	5.20	10.01	4.86	30.89	7.74	14.24	2.81	2.54	7.05	5.13	3.43	6.00	8.64	2.92
49	Ix_SR1	SilentIntronRegion	0	5.11	6.76	2.76	14.47	1.79	12.61	11.83	3.04	7.09	10.33	7.42	6.80	4.75	3.15	20.59	6.11	11.78	5.36	35.75	9.10	16.75	3.31	2.65	8.29	6.03	4.04	7.06	10.17	3.44
50	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	3.47	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00
51	Ix_AR1	ActiveIntronRegion	0	1.04	5.44	0.27	1.16	1.58	11.35	2.61	0.00	6.99	5.38	3.28	5.18	1.57	1.39	18.24	4.31	4.11	2.18	26.90	6.89	13.86	1.17	1.76	5.22	1.16	0.00	1.48	1.06	3.67
52	Ix_AR5	ActiveIntronRegion	0	1.00	3.00	0.00	3.34	1.14	3.08	3.97	0.00	2.60	3.30	0.55	1.72	0.30	0.15	6.09	0.00	1.36	2.54	4.46	3.26	5.18	0.00	1.12	1.73	1.36	1.63	0.85	0.57	2.24
53	Ix_AR6	ActiveIntronRegion	0	0.58	1.76	0.46	0.00	0.00	2.74	1.54	0.00	2.45	2.66	0.32	2.35	1.95	0.68	6.77	0.68	0.84	1.21	4.36	2.16	4.35	0.00	0.49	3.11	1.00	0.86	0.50	1.55	3.04
54	Ix_AR8	ActiveIntronRegion	0	0.67	0.51	0.26	0.00	0.00	0.00	0.00	0.00	0.35	0.91	0.00	0.19	0.51	0.14	0.00	0.78	0.68	0.30	7.46	1.61	2.20	0.00	0.00	0.97	0.39	0.00	0.00	0.26	1.68
55	Ix_AR9	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.63	0.00	1.70	2.81	1.25	0.00	0.00	1.61	1.43	0.00	0.00	0.00	7.38
56	Ix_SR5	SilentIntronRegion	0	0.95	1.43	0.00	0.00	0.00	0.61	0.22	0.62	2.43	0.48	0.13	0.69	0.29	0.00	2.25	0.20	0.83	0.43	3.56	0.03	1.59	0.60	0.40	0.24	0.49	0.70	0.00	2.00	1.49
57	E6_Aa	NovelBoundary	0	2.95	0.00	1.54	0.00	0.00	3.64	0.00	9.85	1.74	0.00	0.00	0.00	1.18	0.00	8.37	0.00	0.00	0.00	8.09	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	6.74	1.68
58	ER6a	ExonRegion	0	2.56	3.49	3.71	3.59	2.34	6.99	1.70	1.60	5.61	8.38	3.36	10.23	3.06	4.85	7.38	9.27	11.05	3.62	9.52	3.64	9.45	3.84	4.64	8.75	5.07	5.16	6.13	6.42	5.97