Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NDUFAF4	Gene	0	55.43	71.38	30.52	143.38	207.12	106.69	174.00	86.79	104.61	61.72	73.48	87.97	65.34	33.11	92.50	53.55	31.86	35.62	112.00	72.46	212.77	46.48	62.74	84.91	32.23	21.21	48.69	65.10	76.79
2	316149	Transcript	0	24.95	14.35	11.62	92.78	111.79	21.82	50.34	25.29	14.43	16.01	18.04	23.03	12.36	7.33	27.53	25.03	8.98	9.72	37.37	19.94	43.10	31.31	27.63	22.43	6.56	3.99	9.81	14.58	14.74
3	489477	Transcript	0	5.02	1.53	0.51	8.72	4.31	5.60	7.74	7.03	3.19	0.36	0.34	1.35	2.73	3.25	3.58	4.19	0.37	4.06	0.80	0.00	3.38	1.89	1.43	3.50	0.91	0.00	5.49	0.00	0.70
4	478382	Transcript	0	5.81	4.01	0.20	12.49	1.25	10.65	9.18	12.38	6.15	5.37	4.50	9.23	4.04	3.73	6.85	11.85	4.84	10.31	11.06	7.81	21.44	2.90	4.72	12.79	2.84	1.72	1.70	5.32	4.32
5	ER1a	ExonRegion	0	41.53	8.62	19.92	161.79	95.27	16.32	36.79	27.85	7.02	13.35	11.90	9.90	11.85	5.10	23.10	35.43	4.38	14.33	39.04	11.59	39.23	55.21	48.37	18.28	5.00	4.91	7.78	11.00	13.76
6	ER1b	ExonRegion	0	208.64	86.42	132.05	520.78	524.26	164.14	270.02	324.39	107.18	114.26	151.58	190.66	158.64	80.27	173.54	133.08	56.19	86.05	176.27	132.37	327.90	213.58	197.27	157.11	78.81	75.08	112.16	179.19	217.10
7	E1_Da	NovelBoundary	0	5.01	7.37	0.00	0.00	5.60	7.79	2.17	18.81	1.34	3.91	3.61	3.67	3.85	5.49	7.57	20.20	0.86	13.61	0.00	3.72	24.55	0.00	0.00	5.44	0.00	0.00	0.00	4.49	4.03
8	E1a_E2b	KnownJunction	0	285.43	266.71	14.40	115.61	88.42	334.41	502.86	545.98	267.40	251.14	238.11	250.81	273.19	134.29	380.10	277.46	79.66	214.35	606.49	338.82	748.98	212.60	261.61	323.48	164.00	99.22	102.53	155.01	271.37
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1	Intron	0	2.31	1.16	2.61	6.88	4.69	2.47	2.42	3.75	1.88	3.29	2.14	2.96	0.70	1.47	1.11	3.49	1.79	3.97	2.30	6.75	6.33	1.51	1.30	3.36	0.51	1.13	3.52	2.15	3.21
11	I1_AR1	ActiveIntronRegion	0	2.36	1.18	2.66	7.01	4.78	2.52	2.47	3.82	1.92	3.35	2.18	3.01	0.71	1.49	1.13	3.55	1.83	4.04	2.34	6.88	6.45	1.54	1.33	3.42	0.52	1.15	3.58	2.19	3.27
12	E2_Aa	NovelBoundary	0	11.80	0.00	1.47	0.00	7.22	3.57	5.15	0.00	6.55	3.48	0.00	3.07	0.00	4.30	8.17	3.44	1.19	18.49	16.18	3.14	3.89	0.00	0.00	16.33	1.93	4.25	0.00	4.99	3.37
13	ER2a	ExonRegion	0	5.81	4.01	0.20	12.49	1.25	10.65	9.18	12.38	6.15	5.37	4.50	9.23	4.04	3.73	6.85	11.85	4.84	10.31	11.06	7.81	21.44	2.90	4.72	12.79	2.84	1.72	1.70	5.32	4.32
14	E2_Ab	KnownBoundary	0	8.43	3.49	0.00	28.90	0.00	5.87	2.92	2.54	4.69	1.88	3.23	12.11	0.00	4.81	9.97	3.82	5.90	13.87	8.09	12.40	7.38	0.00	2.51	5.38	0.00	0.00	0.00	9.08	0.00
15	ER2b	ExonRegion	0	211.33	242.86	70.21	271.28	209.03	335.55	560.40	348.84	300.72	263.06	380.05	363.02	299.54	134.74	373.28	228.11	122.74	153.97	412.99	230.31	588.35	171.17	404.19	274.47	152.27	124.80	266.50	364.40	403.08
16	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	8.52	0.00	0.00	1.28	1.60	8.07	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	5.05	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00
17	E2a_E3a	KnownJunction	0	8.32	0.00	1.54	21.35	0.00	3.57	14.25	0.00	5.27	0.00	0.00	2.92	0.00	0.91	0.00	7.65	0.00	4.62	0.00	0.00	0.00	2.14	0.00	2.93	0.00	0.00	10.14	0.00	1.29
18	E2a_E4a	KnownJunction	0	277.00	272.24	266.14	452.74	598.18	349.45	462.58	372.45	277.54	232.44	278.70	261.11	243.20	108.72	301.97	195.45	127.79	97.86	339.88	223.29	824.63	151.78	252.01	305.54	140.74	111.58	249.48	337.21	350.08
19	I2	Intron	0	0.20	3.56	0.47	0.00	0.46	4.41	0.00	0.00	0.74	1.09	0.90	2.38	0.37	1.11	0.00	2.38	0.28	3.18	0.00	0.64	3.50	0.00	0.00	0.61	0.27	0.45	0.00	1.69	1.07
20	I2_SR1	SilentIntronRegion	0	0.20	3.60	0.48	0.00	0.47	4.46	0.00	0.00	0.75	1.10	0.91	2.41	0.37	1.12	0.00	2.39	0.28	3.21	0.00	0.64	3.54	0.00	0.00	0.62	0.27	0.45	0.00	1.71	1.08
21	E3_Aa	NovelBoundary	0	0.00	9.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.70	0.00	1.13	0.00	3.29	0.97	4.62	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68
22	ER3a	ExonRegion	0	4.56	4.60	0.00	4.81	5.55	9.31	6.05	6.52	2.79	1.09	1.02	1.13	2.34	3.56	1.36	4.92	1.10	7.56	2.39	0.00	6.05	1.06	1.83	4.52	1.23	0.00	4.34	0.00	0.82
23	E3_Da	NovelBoundary	0	0.00	23.37	0.00	0.00	0.00	0.00	0.00	0.00	3.11	2.04	0.00	6.78	1.50	0.93	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51
24	E3a_E4a	KnownJunction	0	2.18	0.00	0.00	0.00	7.37	3.91	2.92	14.58	1.52	0.00	0.00	0.00	5.86	5.27	9.37	0.00	0.00	0.00	0.00	0.00	4.09	2.48	2.46	3.05	1.52	0.00	1.99	0.00	0.00
25	I3	Intron	0	0.19	1.36	0.25	0.00	0.15	2.65	0.18	0.00	0.81	0.35	0.68	0.65	0.08	0.76	0.28	2.03	1.12	1.57	1.44	0.49	3.35	0.05	0.00	1.49	0.34	0.14	0.00	0.64	0.70
26	I3_SR1	SilentIntronRegion	0	0.20	1.43	0.27	0.00	0.15	2.79	0.19	0.00	0.85	0.37	0.72	0.68	0.08	0.80	0.29	2.14	1.14	1.54	1.42	0.51	3.44	0.06	0.00	1.43	0.32	0.15	0.00	0.67	0.74
27	I3_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	2.28	1.89	0.00	1.69	0.00	0.00	2.55	0.85	0.00	0.00	0.00	0.00
28	E4_Aa	NovelBoundary	0	2.24	4.75	0.00	0.00	0.00	1.80	0.00	0.00	4.11	5.75	2.47	0.00	0.00	0.00	0.00	0.00	0.97	0.00	0.00	0.00	2.05	0.00	1.97	2.99	0.00	0.00	0.00	0.00	0.00
29	ER4a	ExonRegion	0	212.51	337.84	131.39	600.31	570.77	507.66	690.75	270.80	520.40	247.22	252.50	262.00	262.84	125.57	329.00	198.69	101.29	150.84	470.63	276.15	1036.70	148.77	213.74	360.06	121.56	65.94	163.30	194.19	265.38
30	E4_Da	KnownBoundary	0	145.10	341.17	25.06	227.77	291.80	613.50	895.35	135.01	490.01	181.67	156.62	198.01	166.13	74.91	139.92	160.11	79.62	125.73	355.84	234.37	951.90	94.61	137.95	328.33	84.37	58.11	86.52	170.83	175.60
31	ER4b	ExonRegion	0	65.80	159.05	38.42	290.30	278.54	230.10	371.77	83.44	354.09	101.20	97.40	150.85	117.77	46.57	187.28	76.43	62.21	74.14	215.09	126.16	573.43	49.02	90.76	154.06	45.80	29.59	93.08	89.28	123.99
32	E4_Db	KnownBoundary	1	10.97	9.31	2.49	51.98	144.28	30.08	105.39	17.42	27.10	26.28	8.54	60.69	18.09	7.25	16.74	10.79	30.09	9.25	72.83	34.73	66.34	4.47	0.00	25.00	7.61	6.18	0.00	4.40	12.45
33	ER4c	ExonRegion	0	8.36	20.07	3.32	23.76	128.31	27.31	63.89	22.73	21.84	18.66	24.19	36.17	12.86	9.55	31.97	14.62	13.58	5.10	35.71	28.28	46.97	7.42	6.90	26.57	8.12	3.07	11.84	18.16	15.72